Wall clock time and date at job start Wed Apr 1 2020 03:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46874 * 2 1 4 4 C 1.34778 * 119.99893 * 149.79180 * 3 2 1 5 5 O 1.21633 * 119.99900 * 187.30190 * 4 3 2 6 6 C 1.47217 * 120.00249 * 7.30473 * 4 3 2 7 7 C 1.36560 * 120.53976 * 122.71922 * 6 4 3 8 8 N 1.36606 * 120.12116 * 179.97438 * 7 6 4 9 9 N 1.40271 * 131.40434 * 179.97438 * 8 7 6 10 10 C 1.30876 * 108.45670 * 179.74513 * 9 8 7 11 11 C 1.50703 * 125.68196 * 180.27880 * 10 9 8 12 12 C 1.39650 * 108.62929 * 0.40497 * 10 9 8 13 13 C 1.36331 * 107.89554 * 359.59226 * 12 10 9 14 14 N 1.38398 * 131.53776 * 180.24185 * 13 12 10 15 15 H 0.96996 * 119.96828 * 359.97438 * 14 13 12 16 16 C 1.34925 * 120.06355 * 180.02562 * 14 13 12 17 17 O 1.21733 * 120.57618 * 179.97438 * 16 14 13 18 18 C 1.46497 * 120.00248 * 329.79188 * 3 2 1 19 19 C 1.53946 * 113.74233 * 222.66957 * 18 3 2 20 20 N 1.47813 * 86.03678 * 222.08211 * 19 18 3 21 21 C 1.36942 * 134.45913 * 204.64475 * 20 19 18 22 22 H 1.08001 * 120.00086 * 179.86055 * 21 20 19 23 23 C 1.38808 * 119.99682 * 359.86558 * 21 20 19 24 24 N 1.31617 * 120.00244 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46808 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47122 * 119.99727 * 25 23 21 28 28 H 1.48501 * 109.47017 * 239.99781 * 25 23 21 29 29 C 1.47582 * 91.05141 * 24.54631 * 20 19 18 30 30 H 1.09007 * 109.46902 * 60.00155 * 1 2 3 31 31 H 1.08996 * 109.46977 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47390 * 300.00408 * 1 2 3 33 33 H 1.09000 * 109.47514 * 240.00133 * 2 1 3 34 34 H 1.09000 * 109.47162 * 119.99554 * 2 1 3 35 35 H 1.08007 * 119.93699 * 359.95573 * 7 6 4 36 36 H 1.08993 * 109.47063 * 270.14324 * 11 10 9 37 37 H 1.09000 * 109.46980 * 30.15436 * 11 10 9 38 38 H 1.09000 * 109.46546 * 150.14829 * 11 10 9 39 39 H 1.08002 * 126.05023 * 179.85292 * 12 10 9 40 40 H 1.08999 * 112.94249 * 354.25578 * 18 3 2 41 41 H 1.09004 * 113.77091 * 336.34362 * 19 18 3 42 42 H 1.08996 * 113.77241 * 107.74559 * 19 18 3 43 43 H 0.97006 * 119.99954 * 180.02562 * 24 23 21 44 44 H 1.09001 * 113.77405 * 221.15260 * 29 20 19 45 45 H 1.08998 * 113.76715 * 89.75244 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.1939 1.6804 0.5873 5 8 3.5368 2.8414 0.7051 6 6 4.0631 0.6020 1.0861 7 6 5.3470 0.4817 0.6368 8 7 6.1463 -0.5219 1.1058 9 7 7.4754 -0.8624 0.8143 10 6 7.8009 -1.9100 1.5280 11 6 9.1426 -2.5963 1.5208 12 6 6.6968 -2.2876 2.2953 13 6 5.6823 -1.4177 2.0259 14 7 4.3890 -1.3373 2.5120 15 1 4.0759 -1.9824 3.1652 16 6 3.5629 -0.3631 2.0774 17 8 2.4234 -0.2839 2.4983 18 6 1.2287 2.4373 -0.6383 19 6 2.0689 3.4207 -1.4731 20 7 1.2276 4.4822 -0.8811 21 6 0.8690 5.7472 -1.2639 22 1 0.2203 6.3383 -0.6346 23 6 1.3394 6.2695 -2.4609 24 7 2.1304 5.5493 -3.2276 25 14 0.8509 7.9954 -2.9827 26 1 -0.0382 8.5908 -1.9531 27 1 2.0692 8.8318 -3.1289 28 1 0.1329 7.9353 -4.2812 29 6 0.9272 3.6307 0.2863 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.7312 1.1813 -0.0909 36 1 9.1478 -3.3758 0.7590 37 1 9.9224 -1.8673 1.3003 38 1 9.3279 -3.0421 2.4980 39 1 6.6555 -3.1188 2.9837 40 1 0.3522 2.0552 -1.1615 41 1 3.1153 3.4703 -1.1718 42 1 1.9399 3.3053 -2.5492 43 1 2.4594 5.9145 -4.0639 44 1 -0.1116 3.6825 0.6123 45 1 1.6375 3.7420 1.1055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000956958949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:07 Heat of formation + Delta-G solvation = 127.922858 kcal Electronic energy + Delta-G solvation = -30723.891062 eV Core-core repulsion = 26554.362568 eV Total energy + Delta-G solvation = -4169.528494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.88646 -40.66619 -39.46680 -37.07214 -36.57595 -35.26481 -34.90155 -32.13754 -31.80718 -30.10389 -29.77043 -28.71626 -27.28583 -24.83484 -24.59239 -23.96941 -23.35325 -22.67113 -21.45299 -20.30555 -19.60193 -18.72784 -17.72174 -17.43952 -17.00204 -16.66051 -16.41624 -16.07124 -15.66633 -15.36763 -15.01269 -14.61475 -14.38741 -14.13561 -13.71554 -13.69764 -13.54316 -13.47197 -13.36160 -12.91281 -12.70865 -12.30365 -12.21015 -11.92777 -11.52242 -11.34690 -11.29502 -11.25511 -11.14557 -10.96244 -10.80708 -10.56401 -10.32798 -9.99430 -9.89019 -9.49508 -9.36827 -9.03585 -8.75614 -8.58004 -7.98058 -6.69144 -5.64370 -2.94295 0.12482 1.09287 1.41955 2.02304 2.08445 2.62622 3.05370 3.26648 3.46823 3.51874 3.54502 3.67465 3.80698 4.23788 4.52821 4.59680 4.70832 4.86373 5.04891 5.08031 5.11390 5.17454 5.27312 5.29984 5.39164 5.45146 5.56144 5.64202 5.67189 5.74739 5.80622 5.90076 6.00529 6.05492 6.17513 6.32659 6.46548 6.47725 6.69142 6.73272 6.92553 7.03575 7.35800 7.38355 7.65151 7.67723 7.80294 8.10072 8.47853 9.17419 9.83356 10.75090 11.53293 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.002840 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.357872 B = 9855.577851 C =11017.491536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.075 3.925 3 N -0.580 5.580 4 C 0.582 3.418 5 O -0.501 6.501 6 C -0.257 4.257 7 C 0.233 3.767 8 N -0.334 5.334 9 N -0.275 5.275 10 C 0.128 3.872 11 C -0.077 4.077 12 C -0.287 4.287 13 C 0.316 3.684 14 N -0.624 5.624 15 H 0.431 0.569 16 C 0.558 3.442 17 O -0.486 6.486 18 C 0.086 3.914 19 C 0.157 3.843 20 N -0.604 5.604 21 C -0.212 4.212 22 H 0.080 0.920 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.112 3.888 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.192 0.808 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.165 0.835 40 H 0.111 0.889 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.251 0.749 44 H 0.037 0.963 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.056 -24.500 10.941 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.048 4.048 3 N -0.312 5.312 4 C 0.366 3.634 5 O -0.376 6.376 6 C -0.269 4.269 7 C 0.110 3.890 8 N -0.109 5.109 9 N -0.095 5.095 10 C -0.039 4.039 11 C -0.136 4.136 12 C -0.319 4.319 13 C 0.099 3.901 14 N -0.271 5.271 15 H 0.272 0.728 16 C 0.351 3.649 17 O -0.360 6.360 18 C -0.017 4.017 19 C 0.031 3.969 20 N -0.330 5.330 21 C -0.340 4.340 22 H 0.098 0.902 23 C -0.207 4.207 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.015 4.015 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.208 0.792 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.183 0.817 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.910 -22.496 10.028 26.549 hybrid contribution -0.620 0.039 0.571 0.844 sum 9.291 -22.457 10.600 26.514 Atomic orbital electron populations 1.21989 0.94723 1.01886 1.02990 1.22233 0.96088 0.83434 1.03021 1.47915 1.19617 1.09095 1.54588 1.16904 0.81202 0.86591 0.78716 1.90941 1.73116 1.18614 1.54894 1.21624 0.95438 1.03320 1.06491 1.21884 0.87169 0.86581 0.93343 1.45876 1.10894 1.22235 1.31887 1.77930 0.87922 1.18616 1.25074 1.22459 0.97013 0.92293 0.92163 1.20341 0.89338 0.99941 1.03973 1.20617 0.91540 1.06818 1.12935 1.18753 0.86460 0.92863 0.92062 1.43062 1.08861 1.31907 1.43245 0.72787 1.17983 0.84927 0.80028 0.81967 1.90889 1.16413 1.72269 1.56471 1.24188 0.95977 0.84985 0.96581 1.22689 0.94425 0.82714 0.97089 1.45685 1.54977 1.13495 1.18837 1.19049 1.23692 0.88924 1.02375 0.90245 1.24770 0.99949 0.98496 0.97525 1.69840 1.37378 1.36304 1.13354 0.86046 0.77531 0.84084 0.78123 1.20529 1.21848 1.21842 1.22951 0.97775 0.88169 0.92598 0.91838 0.91937 0.91723 0.93085 0.88147 0.79152 0.89446 0.89990 0.89529 0.81697 0.87161 0.93265 0.91378 0.93882 0.94501 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.30 37.16 0.35 -1.66 16 2 C 0.07 1.04 6.11 -4.04 -0.02 1.01 16 3 N -0.58 -10.17 3.08 -169.24 -0.52 -10.69 16 4 C 0.58 10.62 6.31 -12.61 -0.08 10.54 16 5 O -0.50 -11.23 12.83 5.25 0.07 -11.16 16 6 C -0.26 -3.62 5.15 -103.26 -0.53 -4.16 16 7 C 0.23 2.88 10.94 -16.03 -0.18 2.70 16 8 N -0.33 -3.75 3.85 -11.66 -0.04 -3.79 16 9 N -0.28 -2.99 12.65 33.63 0.43 -2.56 16 10 C 0.13 0.99 7.19 -82.47 -0.59 0.40 16 11 C -0.08 -0.29 10.44 36.01 0.38 0.08 16 12 C -0.29 -1.98 10.76 -39.74 -0.43 -2.40 16 13 C 0.32 2.91 7.90 -152.96 -1.21 1.70 16 14 N -0.62 -5.45 5.39 -12.39 -0.07 -5.52 16 15 H 0.43 2.41 8.93 -40.82 -0.36 2.04 16 16 C 0.56 6.98 6.76 -12.59 -0.09 6.90 16 17 O -0.49 -7.11 14.79 5.16 0.08 -7.04 16 18 C 0.09 1.76 4.02 -70.15 -0.28 1.48 16 19 C 0.16 4.01 6.79 -2.84 -0.02 3.99 16 20 N -0.60 -16.84 3.70 -177.88 -0.66 -17.50 16 21 C -0.21 -6.35 10.70 -15.06 -0.16 -6.51 16 22 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.92 -28.54 11.39 55.49 0.63 -27.91 16 25 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 C 0.11 2.63 8.27 -2.97 -0.02 2.60 16 30 H 0.06 0.83 6.24 -51.92 -0.32 0.50 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.38 3.03 -53.76 -0.16 1.21 16 35 H 0.19 2.20 8.06 -52.48 -0.42 1.78 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 39 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.11 2.10 5.87 -51.93 -0.30 1.80 16 41 H 0.05 1.35 5.78 -51.93 -0.30 1.05 16 42 H 0.07 1.87 7.17 -51.93 -0.37 1.50 16 43 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.05 1.30 6.24 -51.93 -0.32 0.97 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -37.88 367.20 -8.07 -45.95 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.50 Total: 0.28 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: -2.99 Total: 16.25 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.23 Total: -67.98 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.14 Total: -18.19 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.88 -8.07 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956958949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.876 kcal (2) G-P(sol) polarization free energy of solvation -37.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds