Wall clock time and date at job start Wed Apr 1 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46874 * 2 1 4 4 C 1.34778 * 119.99893 * 149.79180 * 3 2 1 5 5 O 1.21633 * 119.99900 * 187.30190 * 4 3 2 6 6 C 1.47217 * 120.00249 * 7.30473 * 4 3 2 7 7 C 1.36560 * 120.53976 * 122.71922 * 6 4 3 8 8 N 1.36606 * 120.12116 * 179.97438 * 7 6 4 9 9 N 1.40271 * 131.40434 * 179.97438 * 8 7 6 10 10 C 1.30876 * 108.45670 * 179.74513 * 9 8 7 11 11 C 1.50703 * 125.68196 * 180.27880 * 10 9 8 12 12 C 1.39650 * 108.62929 * 0.40497 * 10 9 8 13 13 C 1.36331 * 107.89554 * 359.59226 * 12 10 9 14 14 N 1.38398 * 131.53776 * 180.24185 * 13 12 10 15 15 H 0.96996 * 119.96828 * 359.97438 * 14 13 12 16 16 C 1.34925 * 120.06355 * 180.02562 * 14 13 12 17 17 O 1.21733 * 120.57618 * 179.97438 * 16 14 13 18 18 C 1.46497 * 120.00248 * 329.79188 * 3 2 1 19 19 C 1.53946 * 113.74233 * 222.66957 * 18 3 2 20 20 N 1.47813 * 86.03678 * 222.08211 * 19 18 3 21 21 C 1.36942 * 134.45913 * 204.64475 * 20 19 18 22 22 H 1.08001 * 120.00086 * 179.86055 * 21 20 19 23 23 C 1.38808 * 119.99682 * 359.86558 * 21 20 19 24 24 N 1.31617 * 120.00244 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46808 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47122 * 119.99727 * 25 23 21 28 28 H 1.48501 * 109.47017 * 239.99781 * 25 23 21 29 29 C 1.47582 * 91.05141 * 24.54631 * 20 19 18 30 30 H 1.09007 * 109.46902 * 60.00155 * 1 2 3 31 31 H 1.08996 * 109.46977 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47390 * 300.00408 * 1 2 3 33 33 H 1.09000 * 109.47514 * 240.00133 * 2 1 3 34 34 H 1.09000 * 109.47162 * 119.99554 * 2 1 3 35 35 H 1.08007 * 119.93699 * 359.95573 * 7 6 4 36 36 H 1.08993 * 109.47063 * 270.14324 * 11 10 9 37 37 H 1.09000 * 109.46980 * 30.15436 * 11 10 9 38 38 H 1.09000 * 109.46546 * 150.14829 * 11 10 9 39 39 H 1.08002 * 126.05023 * 179.85292 * 12 10 9 40 40 H 1.08999 * 112.94249 * 354.25578 * 18 3 2 41 41 H 1.09004 * 113.77091 * 336.34362 * 19 18 3 42 42 H 1.08996 * 113.77241 * 107.74559 * 19 18 3 43 43 H 0.97006 * 119.99954 * 180.02562 * 24 23 21 44 44 H 1.09001 * 113.77405 * 221.15260 * 29 20 19 45 45 H 1.08998 * 113.76715 * 89.75244 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.1939 1.6804 0.5873 5 8 3.5368 2.8414 0.7051 6 6 4.0631 0.6020 1.0861 7 6 5.3470 0.4817 0.6368 8 7 6.1463 -0.5219 1.1058 9 7 7.4754 -0.8624 0.8143 10 6 7.8009 -1.9100 1.5280 11 6 9.1426 -2.5963 1.5208 12 6 6.6968 -2.2876 2.2953 13 6 5.6823 -1.4177 2.0259 14 7 4.3890 -1.3373 2.5120 15 1 4.0759 -1.9824 3.1652 16 6 3.5629 -0.3631 2.0774 17 8 2.4234 -0.2839 2.4983 18 6 1.2287 2.4373 -0.6383 19 6 2.0689 3.4207 -1.4731 20 7 1.2276 4.4822 -0.8811 21 6 0.8690 5.7472 -1.2639 22 1 0.2203 6.3383 -0.6346 23 6 1.3394 6.2695 -2.4609 24 7 2.1304 5.5493 -3.2276 25 14 0.8509 7.9954 -2.9827 26 1 -0.0382 8.5908 -1.9531 27 1 2.0692 8.8318 -3.1289 28 1 0.1329 7.9353 -4.2812 29 6 0.9272 3.6307 0.2863 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.7312 1.1813 -0.0909 36 1 9.1478 -3.3758 0.7590 37 1 9.9224 -1.8673 1.3003 38 1 9.3279 -3.0421 2.4980 39 1 6.6555 -3.1188 2.9837 40 1 0.3522 2.0552 -1.1615 41 1 3.1153 3.4703 -1.1718 42 1 1.9399 3.3053 -2.5492 43 1 2.4594 5.9145 -4.0639 44 1 -0.1116 3.6825 0.6123 45 1 1.6375 3.7420 1.1055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000956958949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:06 Heat of formation + Delta-G solvation = 100.564324 kcal Electronic energy + Delta-G solvation = -30725.077417 eV Core-core repulsion = 26554.362568 eV Total energy + Delta-G solvation = -4170.714849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.68309 -41.87631 -40.71253 -38.71270 -37.54153 -36.62350 -35.87257 -34.12682 -32.76810 -31.31828 -30.54465 -29.82538 -28.89040 -26.60349 -25.94676 -25.39405 -24.44525 -23.72443 -22.67848 -21.72988 -20.62701 -19.75917 -18.82549 -18.76427 -18.34445 -18.01331 -17.62678 -17.08851 -16.92689 -16.84209 -16.47452 -16.04830 -15.79366 -15.33048 -15.22723 -14.83446 -14.39849 -14.31048 -14.15685 -14.09219 -14.06118 -13.52138 -13.36116 -13.26450 -13.06404 -12.87856 -12.83585 -12.57295 -12.47057 -12.26779 -12.00588 -11.94005 -11.86581 -11.78949 -11.54688 -11.31752 -11.14396 -10.67176 -9.95507 -9.57277 -9.40338 -8.89976 -7.90956 -5.24585 -0.79651 0.25712 0.59886 1.12761 1.41115 1.42832 1.45818 1.56032 1.62744 1.87314 2.03115 2.48280 2.82072 2.94854 3.26922 3.40567 3.48885 3.60131 3.80733 4.03011 4.06113 4.14011 4.14378 4.21281 4.34403 4.55400 4.57658 4.61334 4.77888 4.84049 4.86962 4.88750 4.93124 4.97509 5.04660 5.11351 5.20519 5.22845 5.31042 5.38106 5.46892 5.50836 5.65623 5.81747 5.90221 6.19721 6.37789 6.54513 6.90431 7.06077 7.58310 8.56057 9.26654 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.002840 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.357872 B = 9855.577851 C =11017.491536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.071 3.929 3 N -0.580 5.580 4 C 0.580 3.420 5 O -0.555 6.555 6 C -0.284 4.284 7 C 0.258 3.742 8 N -0.349 5.349 9 N -0.313 5.313 10 C 0.134 3.866 11 C -0.077 4.077 12 C -0.259 4.259 13 C 0.296 3.704 14 N -0.604 5.604 15 H 0.448 0.552 16 C 0.567 3.433 17 O -0.513 6.513 18 C 0.120 3.880 19 C 0.158 3.842 20 N -0.631 5.631 21 C -0.234 4.234 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.985 3.015 26 H -0.266 1.266 27 H -0.294 1.294 28 H -0.285 1.285 29 C 0.112 3.888 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.188 0.812 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.208 0.792 40 H 0.132 0.868 41 H 0.025 0.975 42 H 0.042 0.958 43 H 0.249 0.751 44 H 0.055 0.945 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.650 -27.555 12.157 31.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.050 4.050 3 N -0.311 5.311 4 C 0.367 3.633 5 O -0.434 6.434 6 C -0.297 4.297 7 C 0.132 3.868 8 N -0.123 5.123 9 N -0.134 5.134 10 C -0.033 4.033 11 C -0.136 4.136 12 C -0.290 4.290 13 C 0.081 3.919 14 N -0.251 5.251 15 H 0.293 0.707 16 C 0.359 3.641 17 O -0.391 6.391 18 C 0.016 3.984 19 C 0.032 3.968 20 N -0.358 5.358 21 C -0.363 4.363 22 H 0.100 0.900 23 C -0.262 4.262 24 N -0.602 5.602 25 Si 0.812 3.188 26 H -0.190 1.190 27 H -0.221 1.221 28 H -0.212 1.212 29 C -0.014 4.014 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.205 0.795 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.225 0.775 40 H 0.150 0.850 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.517 -25.667 11.303 29.953 hybrid contribution -0.541 0.821 0.252 1.015 sum 9.976 -24.846 11.555 29.161 Atomic orbital electron populations 1.21983 0.93504 1.03675 1.02088 1.22510 0.97092 0.81095 1.04307 1.47918 1.19407 1.09949 1.53849 1.17435 0.81374 0.86883 0.77647 1.90901 1.74257 1.21211 1.57031 1.21036 0.95563 1.04006 1.09081 1.21749 0.86653 0.86269 0.92094 1.45971 1.11299 1.22418 1.32651 1.77983 0.87764 1.20636 1.26987 1.23278 0.98592 0.90917 0.90521 1.20580 0.86835 0.99946 1.06200 1.21192 0.89772 1.06320 1.11717 1.19150 0.86964 0.93367 0.92446 1.42685 1.08327 1.31131 1.43001 0.70691 1.17615 0.84790 0.80241 0.81428 1.90868 1.17486 1.73206 1.57527 1.23547 0.95385 0.84993 0.94443 1.22494 0.93771 0.84501 0.96071 1.46082 1.55417 1.13672 1.20586 1.19460 1.23856 0.90202 1.02748 0.89967 1.25707 1.00160 1.02771 0.97569 1.70045 1.38518 1.38048 1.13556 0.84920 0.77113 0.78780 0.77937 1.18983 1.22083 1.21169 1.22980 0.98087 0.88774 0.91546 0.92267 0.88879 0.92931 0.91351 0.87319 0.79538 0.87813 0.90268 0.86657 0.77538 0.85016 0.95705 0.93966 0.94240 0.92735 0.94770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.30 71.98 0.67 -3.01 16 2 C 0.07 1.90 6.11 86.38 0.53 2.43 16 3 N -0.58 -20.85 3.08 -807.60 -2.49 -23.34 16 4 C 0.58 22.26 6.31 86.60 0.55 22.81 16 5 O -0.56 -26.73 12.83 -4.14 -0.05 -26.78 16 6 C -0.28 -8.24 5.15 -18.98 -0.10 -8.34 16 7 C 0.26 6.55 10.94 83.56 0.91 7.47 16 8 N -0.35 -7.52 3.85 -190.81 -0.74 -8.26 16 9 N -0.31 -6.37 12.65 -47.50 -0.60 -6.97 16 10 C 0.13 1.64 7.19 43.04 0.31 1.95 16 11 C -0.08 -0.29 10.44 71.24 0.74 0.46 16 12 C -0.26 -2.50 10.76 22.17 0.24 -2.26 16 13 C 0.30 4.73 7.90 131.33 1.04 5.77 16 14 N -0.60 -9.31 5.39 -311.23 -1.68 -10.99 16 15 H 0.45 3.73 8.93 -92.71 -0.83 2.90 16 16 C 0.57 13.83 6.76 86.55 0.59 14.41 16 17 O -0.51 -14.77 14.79 -4.45 -0.07 -14.84 16 18 C 0.12 5.10 4.02 46.75 0.19 5.29 16 19 C 0.16 8.53 6.79 86.44 0.59 9.12 16 20 N -0.63 -36.65 3.70 -716.68 -2.65 -39.31 16 21 C -0.23 -14.41 10.70 84.03 0.90 -13.51 16 22 H 0.08 4.85 7.83 -2.91 -0.02 4.82 16 23 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 24 N -0.95 -61.21 11.39 21.65 0.25 -60.96 16 25 Si 0.98 48.65 29.55 68.60 2.03 50.68 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 28 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 29 C 0.11 5.46 8.27 86.49 0.72 6.17 16 30 H 0.06 1.45 6.24 -2.38 -0.01 1.43 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 2.87 3.03 -31.45 -0.10 2.78 16 35 H 0.19 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.21 0.21 8.06 -2.91 -0.02 0.19 16 40 H 0.13 5.02 5.87 -2.39 -0.01 5.01 16 41 H 0.03 1.48 5.78 -2.39 -0.01 1.46 16 42 H 0.04 2.46 7.17 -2.39 -0.02 2.44 16 43 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 44 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.03 1.81 6.24 -2.39 -0.01 1.79 16 Total: -1.00 -87.38 367.20 2.48 -84.90 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.15 Total: 10.89 kcal Atomic # 6 Polarization: 36.65 SS G_CDS: 8.33 Total: 44.98 kcal Atomic # 7 Polarization: -141.92 SS G_CDS: -7.91 Total: -149.83 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -0.12 Total: -41.62 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal Total: -87.38 2.48 -84.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956958949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.464 kcal (2) G-P(sol) polarization free energy of solvation -87.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds