Wall clock time and date at job start Wed Apr 1 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46491 * 109.47484 * 2 1 4 4 C 1.34774 * 120.00104 * 83.43237 * 3 2 1 5 5 O 1.21500 * 120.00149 * 185.24967 * 4 3 2 6 6 C 1.48325 * 120.00179 * 5.24953 * 4 3 2 7 7 C 1.42278 * 126.94073 * 173.84747 * 6 4 3 8 8 C 1.35310 * 103.92121 * 179.97438 * 7 6 4 9 9 C 1.50700 * 126.66463 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47181 * 90.00343 * 9 8 7 11 11 C 1.34948 * 126.03771 * 124.71651 * 10 9 8 12 12 C 1.35319 * 107.74688 * 179.83946 * 11 10 9 13 13 C 1.39873 * 107.91510 * 0.42337 * 12 11 10 14 14 N 1.30833 * 108.20735 * 359.73780 * 13 12 11 15 15 O 1.34017 * 106.67055 * 0.02562 * 8 7 6 16 16 N 1.20907 * 111.84540 * 0.02562 * 15 8 7 17 17 C 1.46504 * 120.00005 * 263.43247 * 3 2 1 18 18 C 1.53944 * 113.74451 * 223.77280 * 17 3 2 19 19 N 1.47809 * 86.04024 * 222.08434 * 18 17 3 20 20 C 1.36935 * 134.45748 * 204.64364 * 19 18 17 21 21 H 1.08003 * 120.00028 * 179.86463 * 20 19 18 22 22 C 1.38811 * 120.00138 * 359.87041 * 20 19 18 23 23 N 1.31617 * 119.99498 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00118 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46925 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47357 * 119.99745 * 24 22 20 27 27 H 1.48497 * 109.47384 * 240.00104 * 24 22 20 28 28 C 1.47583 * 91.04858 * 24.55171 * 19 18 17 29 29 H 1.09003 * 109.47828 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47722 * 300.00622 * 1 2 3 31 31 H 1.09006 * 109.46526 * 60.00039 * 1 2 3 32 32 H 1.09003 * 109.47328 * 239.99295 * 2 1 3 33 33 H 1.09006 * 109.46526 * 119.99961 * 2 1 3 34 34 H 1.07993 * 128.03535 * 0.02562 * 7 6 4 35 35 H 1.09006 * 109.47283 * 210.00156 * 9 8 7 36 36 H 1.08996 * 109.47239 * 330.00182 * 9 8 7 37 37 H 1.08001 * 126.12862 * 0.02562 * 11 10 9 38 38 H 1.07992 * 126.04489 * 180.16252 * 12 11 10 39 39 H 1.08004 * 125.89428 * 179.76154 * 13 12 11 40 40 H 1.08998 * 112.94602 * 355.36872 * 17 3 2 41 41 H 1.09001 * 113.77143 * 336.35501 * 18 17 3 42 42 H 1.09004 * 113.76428 * 107.74616 * 18 17 3 43 43 H 0.97007 * 119.99618 * 180.02562 * 23 22 20 44 44 H 1.09005 * 113.76947 * 221.14986 * 28 19 18 45 45 H 1.08998 * 113.76973 * 89.75234 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1172 2.0609 1.1595 5 8 2.4306 3.2348 1.1507 6 6 1.8433 1.3762 2.4464 7 6 2.0192 1.9100 3.7535 8 6 1.6335 0.9032 4.5710 9 6 1.6168 0.9237 6.0777 10 7 0.3161 1.4096 6.5452 11 6 -0.5123 0.7678 7.3955 12 6 -1.6033 1.5477 7.5759 13 6 -1.4401 2.7014 6.8020 14 7 -0.2900 2.6197 6.1837 15 8 1.2702 -0.1162 3.7804 16 7 1.3916 0.1575 2.6090 17 6 2.3994 2.0233 -1.2604 18 6 3.7126 2.8224 -1.1768 19 7 3.0179 3.8512 -1.9791 20 6 3.4285 4.8451 -2.8269 21 1 2.6993 5.4817 -3.3060 22 6 4.7818 5.0344 -3.0707 23 7 5.6704 4.2583 -2.4873 24 14 5.3418 6.3897 -4.2278 25 1 4.1563 7.1153 -4.7507 26 1 6.2172 7.3377 -3.4928 27 1 6.0970 5.7941 -5.3592 28 6 1.7049 3.3759 -1.5016 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 2.3766 2.8912 4.0289 35 1 1.7857 -0.0843 6.4568 36 1 2.4035 1.5849 6.4409 37 1 -0.3349 -0.1945 7.8527 38 1 -2.4520 1.3180 8.2029 39 1 -2.1423 3.5187 6.7279 40 1 2.3509 1.3469 -2.1137 41 1 3.9650 3.1484 -0.1678 42 1 4.5478 2.3501 -1.6941 43 1 6.6162 4.3908 -2.6573 44 1 0.9400 3.3449 -2.2777 45 1 1.3663 3.8649 -0.5882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957113656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:04 Heat of formation + Delta-G solvation = 200.149058 kcal Electronic energy + Delta-G solvation = -30116.382796 eV Core-core repulsion = 25949.986265 eV Total energy + Delta-G solvation = -4166.396530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.24563 -41.41051 -40.04343 -36.95893 -35.55766 -35.03281 -33.77911 -32.02746 -31.50080 -30.26844 -30.06615 -27.48996 -27.12700 -25.20398 -24.66656 -23.29897 -23.06867 -22.43721 -21.41091 -21.33988 -20.05148 -18.56259 -18.12927 -17.65407 -17.21524 -16.78825 -16.46806 -15.95626 -15.35909 -15.04431 -14.68307 -14.56654 -14.38254 -14.10233 -13.85275 -13.76849 -13.60981 -13.57202 -13.15963 -12.89620 -12.64057 -12.41515 -12.27620 -11.83534 -11.56631 -11.40721 -11.27787 -10.98145 -10.93107 -10.82533 -10.54738 -10.51655 -10.06819 -9.92418 -9.84059 -9.80357 -9.58650 -9.42436 -8.97761 -8.63643 -8.14263 -6.73859 -5.67453 -2.98223 0.86785 1.42920 1.57136 2.31483 2.56484 2.59162 3.04510 3.35412 3.44843 3.49848 3.52574 3.87383 4.05374 4.16921 4.45311 4.55650 4.67250 4.72101 4.85982 4.91908 5.11728 5.16404 5.24768 5.29298 5.35762 5.43052 5.51478 5.59512 5.68260 5.69670 5.71585 5.84304 5.87295 5.95615 6.28259 6.30543 6.37348 6.58504 6.61724 6.64149 6.96385 7.34211 7.37184 7.57198 7.62899 7.68576 7.85003 8.06408 8.40320 9.13868 9.79913 10.70633 11.50165 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.002441 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.825625 B =11468.149470 C =12129.378333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.095 3.905 3 N -0.586 5.586 4 C 0.586 3.414 5 O -0.493 6.493 6 C -0.014 4.014 7 C -0.133 4.133 8 C -0.074 4.074 9 C 0.225 3.775 10 N -0.379 5.379 11 C 0.056 3.944 12 C -0.272 4.272 13 C 0.047 3.953 14 N -0.284 5.284 15 O 0.118 5.882 16 N -0.318 5.318 17 C 0.089 3.911 18 C 0.157 3.843 19 N -0.603 5.603 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.111 3.889 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.183 0.817 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.176 0.824 38 H 0.148 0.852 39 H 0.184 0.816 40 H 0.108 0.892 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.252 0.748 44 H 0.038 0.962 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.348 -14.684 21.735 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.028 4.028 3 N -0.319 5.319 4 C 0.370 3.630 5 O -0.365 6.365 6 C -0.173 4.173 7 C -0.156 4.156 8 C -0.137 4.137 9 C 0.103 3.897 10 N -0.163 5.163 11 C -0.089 4.089 12 C -0.301 4.301 13 C -0.140 4.140 14 N -0.104 5.104 15 O 0.043 5.957 16 N -0.020 5.020 17 C -0.014 4.014 18 C 0.031 3.969 19 N -0.329 5.329 20 C -0.342 4.342 21 H 0.098 0.902 22 C -0.207 4.207 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.016 4.016 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.200 0.800 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.193 0.807 38 H 0.166 0.834 39 H 0.201 0.799 40 H 0.126 0.874 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.312 -14.259 19.763 26.867 hybrid contribution -0.089 0.962 0.359 1.030 sum -11.401 -13.297 20.122 26.678 Atomic orbital electron populations 1.22089 0.95903 1.01783 1.01998 1.21861 0.94647 0.82674 1.03619 1.48017 1.63318 1.13855 1.06726 1.16913 0.78915 0.85904 0.81271 1.90900 1.45678 1.14252 1.85716 1.23822 1.04485 0.91676 0.97329 1.22514 1.02128 1.01272 0.89642 1.24090 1.05247 0.89064 0.95326 1.19888 0.82927 1.02581 0.84330 1.48718 1.16216 1.15326 1.36018 1.22621 0.91568 0.99305 0.95365 1.21562 1.01688 0.97136 1.09744 1.23998 0.95152 0.99189 0.95669 1.77522 1.09989 1.00353 1.22539 1.84784 1.62047 1.37251 1.11664 1.74332 1.15609 1.16182 0.95835 1.24217 1.00441 0.93557 0.83217 1.22696 0.92094 0.86461 0.95639 1.45683 1.00724 1.37236 1.49297 1.19044 0.91268 1.07309 1.16627 0.90198 1.24786 0.95553 0.99705 1.00648 1.69844 1.00393 1.40253 1.46362 0.86031 0.78404 0.81251 0.80014 1.20487 1.21794 1.21788 1.22950 0.90602 0.91033 0.96985 0.91799 0.93034 0.92406 0.90195 0.89103 0.80002 0.85967 0.86016 0.80659 0.83407 0.79942 0.87423 0.93156 0.91264 0.93817 0.94381 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.79 37.16 0.36 -1.61 16 2 C 0.10 1.30 5.74 -4.05 -0.02 1.27 16 3 N -0.59 -10.29 2.75 -168.83 -0.46 -10.76 16 4 C 0.59 11.04 7.06 -12.11 -0.09 10.96 16 5 O -0.49 -11.26 12.67 5.37 0.07 -11.20 16 6 C -0.01 -0.22 6.72 -82.53 -0.55 -0.77 16 7 C -0.13 -1.70 10.93 -39.07 -0.43 -2.13 16 8 C -0.07 -0.72 6.91 -35.35 -0.24 -0.96 16 9 C 0.22 1.31 7.07 -5.19 -0.04 1.27 16 10 N -0.38 -3.15 3.67 -62.54 -0.23 -3.38 16 11 C 0.06 0.35 11.45 -17.22 -0.20 0.16 16 12 C -0.27 -1.93 10.80 -40.01 -0.43 -2.36 16 13 C 0.05 0.42 12.02 -17.37 -0.21 0.21 16 14 N -0.28 -3.20 12.41 30.63 0.38 -2.82 16 15 O 0.12 1.30 11.18 17.24 0.19 1.49 16 16 N -0.32 -4.21 7.63 33.29 0.25 -3.95 16 17 C 0.09 1.81 4.60 -70.14 -0.32 1.49 16 18 C 0.16 4.05 6.79 -2.84 -0.02 4.03 16 19 N -0.60 -16.81 3.70 -177.86 -0.66 -17.46 16 20 C -0.21 -6.40 10.70 -15.06 -0.16 -6.57 16 21 H 0.08 2.30 7.83 -52.48 -0.41 1.89 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.92 -28.67 11.39 55.49 0.63 -28.04 16 24 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 C 0.11 2.58 8.26 -2.96 -0.02 2.55 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.71 7.21 -51.93 -0.37 0.33 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 33 H 0.09 1.21 5.31 -51.93 -0.28 0.93 16 34 H 0.18 2.27 8.06 -52.49 -0.42 1.84 16 35 H 0.12 0.24 8.07 -51.93 -0.42 -0.17 16 36 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 38 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.18 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.11 2.01 7.90 -51.93 -0.41 1.60 16 41 H 0.05 1.41 5.80 -51.93 -0.30 1.11 16 42 H 0.07 1.92 7.16 -51.93 -0.37 1.55 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 1.25 6.21 -51.93 -0.32 0.93 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -38.29 377.08 -7.45 -45.73 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.81 Total: -0.56 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.47 Total: 7.13 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -0.09 Total: -66.41 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.26 Total: -9.70 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.29 -7.45 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957113656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.884 kcal (2) G-P(sol) polarization free energy of solvation -38.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds