Wall clock time and date at job start Wed Apr 1 2020 03:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46491 * 109.47484 * 2 1 4 4 C 1.34774 * 120.00104 * 83.43237 * 3 2 1 5 5 O 1.21500 * 120.00149 * 185.24967 * 4 3 2 6 6 C 1.48325 * 120.00179 * 5.24953 * 4 3 2 7 7 C 1.42278 * 126.94073 * 173.84747 * 6 4 3 8 8 C 1.35310 * 103.92121 * 179.97438 * 7 6 4 9 9 C 1.50700 * 126.66463 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47181 * 90.00343 * 9 8 7 11 11 C 1.34948 * 126.03771 * 124.71651 * 10 9 8 12 12 C 1.35319 * 107.74688 * 179.83946 * 11 10 9 13 13 C 1.39873 * 107.91510 * 0.42337 * 12 11 10 14 14 N 1.30833 * 108.20735 * 359.73780 * 13 12 11 15 15 O 1.34017 * 106.67055 * 0.02562 * 8 7 6 16 16 N 1.20907 * 111.84540 * 0.02562 * 15 8 7 17 17 C 1.46504 * 120.00005 * 263.43247 * 3 2 1 18 18 C 1.53944 * 113.74451 * 223.77280 * 17 3 2 19 19 N 1.47809 * 86.04024 * 222.08434 * 18 17 3 20 20 C 1.36935 * 134.45748 * 204.64364 * 19 18 17 21 21 H 1.08003 * 120.00028 * 179.86463 * 20 19 18 22 22 C 1.38811 * 120.00138 * 359.87041 * 20 19 18 23 23 N 1.31617 * 119.99498 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00118 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46925 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47357 * 119.99745 * 24 22 20 27 27 H 1.48497 * 109.47384 * 240.00104 * 24 22 20 28 28 C 1.47583 * 91.04858 * 24.55171 * 19 18 17 29 29 H 1.09003 * 109.47828 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47722 * 300.00622 * 1 2 3 31 31 H 1.09006 * 109.46526 * 60.00039 * 1 2 3 32 32 H 1.09003 * 109.47328 * 239.99295 * 2 1 3 33 33 H 1.09006 * 109.46526 * 119.99961 * 2 1 3 34 34 H 1.07993 * 128.03535 * 0.02562 * 7 6 4 35 35 H 1.09006 * 109.47283 * 210.00156 * 9 8 7 36 36 H 1.08996 * 109.47239 * 330.00182 * 9 8 7 37 37 H 1.08001 * 126.12862 * 0.02562 * 11 10 9 38 38 H 1.07992 * 126.04489 * 180.16252 * 12 11 10 39 39 H 1.08004 * 125.89428 * 179.76154 * 13 12 11 40 40 H 1.08998 * 112.94602 * 355.36872 * 17 3 2 41 41 H 1.09001 * 113.77143 * 336.35501 * 18 17 3 42 42 H 1.09004 * 113.76428 * 107.74616 * 18 17 3 43 43 H 0.97007 * 119.99618 * 180.02562 * 23 22 20 44 44 H 1.09005 * 113.76947 * 221.14986 * 28 19 18 45 45 H 1.08998 * 113.76973 * 89.75234 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1172 2.0609 1.1595 5 8 2.4306 3.2348 1.1507 6 6 1.8433 1.3762 2.4464 7 6 2.0192 1.9100 3.7535 8 6 1.6335 0.9032 4.5710 9 6 1.6168 0.9237 6.0777 10 7 0.3161 1.4096 6.5452 11 6 -0.5123 0.7678 7.3955 12 6 -1.6033 1.5477 7.5759 13 6 -1.4401 2.7014 6.8020 14 7 -0.2900 2.6197 6.1837 15 8 1.2702 -0.1162 3.7804 16 7 1.3916 0.1575 2.6090 17 6 2.3994 2.0233 -1.2604 18 6 3.7126 2.8224 -1.1768 19 7 3.0179 3.8512 -1.9791 20 6 3.4285 4.8451 -2.8269 21 1 2.6993 5.4817 -3.3060 22 6 4.7818 5.0344 -3.0707 23 7 5.6704 4.2583 -2.4873 24 14 5.3418 6.3897 -4.2278 25 1 4.1563 7.1153 -4.7507 26 1 6.2172 7.3377 -3.4928 27 1 6.0970 5.7941 -5.3592 28 6 1.7049 3.3759 -1.5016 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 2.3766 2.8912 4.0289 35 1 1.7857 -0.0843 6.4568 36 1 2.4035 1.5849 6.4409 37 1 -0.3349 -0.1945 7.8527 38 1 -2.4520 1.3180 8.2029 39 1 -2.1423 3.5187 6.7279 40 1 2.3509 1.3469 -2.1137 41 1 3.9650 3.1484 -0.1678 42 1 4.5478 2.3501 -1.6941 43 1 6.6162 4.3908 -2.6573 44 1 0.9400 3.3449 -2.2777 45 1 1.3663 3.8649 -0.5882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957113656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:03 Heat of formation + Delta-G solvation = 174.076734 kcal Electronic energy + Delta-G solvation = -30117.513377 eV Core-core repulsion = 25949.986265 eV Total energy + Delta-G solvation = -4167.527111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.27613 -41.95181 -41.62736 -38.77221 -36.96681 -35.76037 -34.93119 -34.08914 -32.33324 -31.41457 -30.82641 -29.46687 -27.75055 -26.71208 -26.66392 -24.76402 -24.36608 -23.52163 -22.23126 -21.89134 -21.64938 -19.75782 -19.09035 -18.82049 -18.70154 -18.04854 -17.77158 -17.21511 -16.90669 -16.34980 -16.22686 -15.89122 -15.54488 -15.24539 -14.96797 -14.88670 -14.53697 -14.49785 -14.27870 -14.21048 -13.83386 -13.65413 -13.44332 -13.23263 -13.10774 -12.93041 -12.80366 -12.66374 -12.58039 -12.13578 -12.01770 -11.80780 -11.57861 -11.54975 -11.49611 -11.25324 -10.77873 -10.73985 -10.42152 -9.71121 -9.50807 -8.95135 -7.94363 -5.28711 -0.09275 0.39474 1.00316 1.41132 1.44174 1.54369 1.59555 1.76876 1.87014 1.97966 2.01895 2.44965 2.70845 3.22063 3.24968 3.43685 3.68730 3.72868 3.78289 3.82686 4.06546 4.10570 4.17745 4.19378 4.33447 4.36719 4.39954 4.48268 4.53745 4.70879 4.73353 4.76752 4.80907 4.92775 4.94839 4.96861 5.16478 5.17514 5.20939 5.27083 5.42584 5.74254 5.74707 5.86030 6.16838 6.22410 6.78146 6.81812 6.86526 6.99318 7.54818 8.51419 9.23350 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.002441 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.825625 B =11468.149470 C =12129.378333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.092 3.908 3 N -0.585 5.585 4 C 0.581 3.419 5 O -0.547 6.547 6 C -0.042 4.042 7 C -0.158 4.158 8 C -0.041 4.041 9 C 0.220 3.780 10 N -0.386 5.386 11 C 0.069 3.931 12 C -0.287 4.287 13 C 0.032 3.968 14 N -0.343 5.343 15 O 0.141 5.859 16 N -0.315 5.315 17 C 0.123 3.877 18 C 0.157 3.843 19 N -0.631 5.631 20 C -0.235 4.235 21 H 0.084 0.916 22 C -0.070 4.070 23 N -0.955 5.955 24 Si 0.986 3.014 25 H -0.264 1.264 26 H -0.294 1.294 27 H -0.284 1.284 28 C 0.113 3.887 29 H 0.093 0.907 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.138 0.862 37 H 0.221 0.779 38 H 0.168 0.832 39 H 0.192 0.808 40 H 0.136 0.864 41 H 0.021 0.979 42 H 0.043 0.957 43 H 0.249 0.751 44 H 0.060 0.940 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.676 -17.347 23.024 31.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 N -0.317 5.317 4 C 0.368 3.632 5 O -0.423 6.423 6 C -0.199 4.199 7 C -0.181 4.181 8 C -0.105 4.105 9 C 0.099 3.901 10 N -0.170 5.170 11 C -0.076 4.076 12 C -0.316 4.316 13 C -0.154 4.154 14 N -0.164 5.164 15 O 0.061 5.939 16 N -0.013 5.013 17 C 0.020 3.980 18 C 0.031 3.969 19 N -0.357 5.357 20 C -0.364 4.364 21 H 0.102 0.898 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.814 3.186 25 H -0.188 1.188 26 H -0.221 1.221 27 H -0.211 1.211 28 C -0.014 4.014 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.192 0.808 35 H 0.192 0.808 36 H 0.156 0.844 37 H 0.238 0.762 38 H 0.185 0.815 39 H 0.209 0.791 40 H 0.154 0.846 41 H 0.039 0.961 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.692 -16.960 21.031 29.850 hybrid contribution 0.247 1.713 0.141 1.737 sum -12.445 -15.247 21.172 28.907 Atomic orbital electron populations 1.22025 0.94603 1.03351 1.00968 1.22155 0.95605 0.80154 1.05045 1.48022 1.62944 1.15321 1.05392 1.17397 0.77686 0.85490 0.82661 1.90865 1.48024 1.16665 1.86732 1.23360 1.07245 0.92906 0.96384 1.22551 1.04017 1.02127 0.89453 1.24652 1.01980 0.87057 0.96813 1.20452 0.82642 1.05876 0.81154 1.48852 1.16956 1.14757 1.36444 1.23360 0.90265 1.00215 0.93762 1.21917 1.02982 0.96667 1.10014 1.24376 0.94923 1.00363 0.95711 1.77462 1.11465 1.02706 1.24773 1.84756 1.60775 1.37257 1.11120 1.74282 1.15047 1.14993 0.96968 1.23616 0.95974 0.93136 0.85318 1.22482 0.93764 0.87324 0.93366 1.46091 1.02961 1.37376 1.49296 1.19470 0.91855 1.08035 1.16998 0.89809 1.25743 0.95569 1.02324 1.02644 1.70051 1.00391 1.41947 1.47947 0.84899 0.78050 0.78006 0.77668 1.18846 1.22093 1.21096 1.22983 0.89657 0.92149 0.96572 0.88844 0.94750 0.92732 0.88017 0.88442 0.80755 0.80841 0.84444 0.76211 0.81470 0.79118 0.84644 0.96144 0.93860 0.94193 0.92215 0.94873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.79 71.98 0.70 -2.71 16 2 C 0.09 2.34 5.74 86.38 0.50 2.83 16 3 N -0.58 -20.70 2.75 -806.35 -2.22 -22.91 16 4 C 0.58 22.91 7.06 86.93 0.61 23.52 16 5 O -0.55 -26.85 12.67 -3.72 -0.05 -26.90 16 6 C -0.04 -1.31 6.72 42.96 0.29 -1.02 16 7 C -0.16 -4.13 10.93 22.60 0.25 -3.88 16 8 C -0.04 -0.72 6.91 25.01 0.17 -0.55 16 9 C 0.22 1.81 7.07 85.63 0.61 2.42 16 10 N -0.39 -5.42 3.67 -351.79 -1.29 -6.71 16 11 C 0.07 0.61 11.45 83.54 0.96 1.56 16 12 C -0.29 -3.43 10.80 21.99 0.24 -3.20 16 13 C 0.03 0.57 12.02 85.24 1.02 1.59 16 14 N -0.34 -7.59 12.41 -57.02 -0.71 -8.30 16 15 O 0.14 2.76 11.18 71.87 0.80 3.56 16 16 N -0.31 -7.93 7.63 -49.52 -0.38 -8.30 16 17 C 0.12 5.12 4.60 46.75 0.21 5.33 16 18 C 0.16 8.50 6.79 86.44 0.59 9.08 16 19 N -0.63 -36.36 3.70 -716.64 -2.65 -39.02 16 20 C -0.24 -14.39 10.70 84.03 0.90 -13.50 16 21 H 0.08 4.89 7.83 -2.91 -0.02 4.87 16 22 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 23 N -0.95 -61.53 11.39 21.65 0.25 -61.28 16 24 Si 0.99 48.50 29.55 68.60 2.03 50.53 16 25 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 27 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 28 C 0.11 5.33 8.26 86.49 0.71 6.05 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.03 0.89 7.21 -2.39 -0.02 0.88 16 31 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.10 2.17 7.86 -2.39 -0.02 2.15 16 33 H 0.10 2.40 5.31 -2.38 -0.01 2.39 16 34 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.17 -0.33 8.07 -2.38 -0.02 -0.34 16 36 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.22 -0.25 8.06 -2.91 -0.02 -0.27 16 38 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 39 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.14 4.89 7.90 -2.39 -0.02 4.87 16 41 H 0.02 1.24 5.80 -2.39 -0.01 1.23 16 42 H 0.04 2.53 7.16 -2.38 -0.02 2.51 16 43 H 0.25 15.41 8.31 -92.70 -0.77 14.64 16 44 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 45 H 0.03 1.72 6.21 -2.39 -0.01 1.70 16 Total: -1.00 -89.68 377.08 5.04 -84.65 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.02 Total: 10.97 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 8.23 Total: 23.72 kcal Atomic # 7 Polarization: -139.53 SS G_CDS: -7.00 Total: -146.53 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.76 Total: -23.34 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -89.68 5.04 -84.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957113656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.725 kcal (2) G-P(sol) polarization free energy of solvation -89.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds