Wall clock time and date at job start Wed Apr 1 2020 03:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36251 * 126.29854 * 2 1 4 4 N 1.30129 * 110.05146 * 180.02562 * 3 2 1 5 5 C 1.35702 * 109.49949 * 359.97438 * 4 3 2 6 6 C 1.39480 * 134.43105 * 180.02562 * 5 4 3 7 7 N 1.31765 * 120.63191 * 179.97438 * 6 5 4 8 8 C 1.31947 * 122.59819 * 0.02562 * 7 6 5 9 9 C 1.39368 * 121.02116 * 0.25278 * 8 7 6 10 10 C 1.47535 * 120.75254 * 179.74006 * 9 8 7 11 11 O 1.21593 * 119.99394 * 143.17558 * 10 9 8 12 12 N 1.34770 * 120.00363 * 323.17659 * 10 9 8 13 13 C 1.46500 * 120.00157 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47438 * 179.97438 * 13 12 10 15 15 H 1.09004 * 110.88288 * 51.11839 * 14 13 12 16 16 C 1.54908 * 111.00465 * 287.19817 * 14 13 12 17 17 N 1.47417 * 104.83187 * 204.91195 * 16 14 13 18 18 C 1.36939 * 125.64897 * 204.17419 * 17 16 14 19 19 H 1.07998 * 119.99913 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99872 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00123 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99790 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47306 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47171 * 120.00131 * 22 20 18 25 25 H 1.48501 * 109.47031 * 239.99897 * 22 20 18 26 26 C 1.47022 * 108.70297 * 24.12906 * 17 16 14 27 27 C 1.54325 * 107.27164 * 358.94133 * 26 17 16 28 28 H 1.09006 * 110.87183 * 219.37189 * 27 26 17 29 29 O 1.42899 * 110.72095 * 96.16845 * 27 26 17 30 30 C 1.36922 * 126.29460 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46789 * 263.70809 * 1 2 3 32 32 H 1.08997 * 109.46991 * 23.70453 * 1 2 3 33 33 H 1.09000 * 109.47066 * 143.70927 * 1 2 3 34 34 H 1.08004 * 124.97519 * 359.95767 * 3 2 1 35 35 H 1.08000 * 119.68138 * 0.02562 * 6 5 4 36 36 H 1.08003 * 119.48610 * 179.97438 * 8 7 6 37 37 H 0.97001 * 120.00102 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.46984 * 300.00257 * 13 12 10 39 39 H 1.09006 * 109.47121 * 59.99663 * 13 12 10 40 40 H 1.09003 * 110.36584 * 323.75525 * 16 14 13 41 41 H 1.09008 * 110.36674 * 86.07562 * 16 14 13 42 42 H 0.96996 * 119.99953 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.88358 * 239.51977 * 26 17 16 44 44 H 1.09008 * 110.01082 * 118.42871 * 26 17 16 45 45 H 0.96701 * 114.00281 * 66.47834 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0981 0.0000 4 7 3.5210 0.7340 -0.0005 5 6 3.5980 -0.6208 -0.0004 6 6 4.6478 -1.5392 -0.0003 7 7 4.4066 -2.8345 0.0004 8 6 3.1836 -3.3299 0.0006 9 6 2.0695 -2.4926 -0.0053 10 6 0.7048 -3.0529 -0.0108 11 8 -0.1805 -2.5033 0.6158 12 7 0.4393 -4.1738 -0.7104 13 6 -0.9158 -4.7305 -0.7154 14 6 -0.9455 -5.9929 -1.5795 15 1 -0.1521 -6.6815 -1.2886 16 6 -0.8500 -5.6381 -3.0843 17 7 -1.4827 -6.7731 -3.7805 18 6 -1.2415 -7.1504 -5.0746 19 1 -0.5346 -6.5975 -5.6754 20 6 -1.9057 -8.2434 -5.6142 21 7 -2.7677 -8.9169 -4.8821 22 14 -1.5762 -8.7584 -7.3793 23 1 -0.5732 -7.8445 -7.9826 24 1 -1.0553 -10.1489 -7.4002 25 1 -2.8385 -8.6910 -8.1585 26 6 -2.4147 -7.4336 -2.8550 27 6 -2.3337 -6.6822 -1.5094 28 1 -2.3765 -7.3791 -0.6723 29 8 -3.3764 -5.7102 -1.4095 30 6 2.2755 -1.1036 0.0005 31 1 -0.3633 -0.1126 1.0215 32 1 -0.3633 0.9409 -0.4131 33 1 -0.3633 -0.8283 -0.6083 34 1 1.9249 2.1210 -0.0007 35 1 5.6681 -1.1851 0.0001 36 1 3.0439 -4.4009 0.0007 37 1 1.1456 -4.6125 -1.2100 38 1 -1.2097 -4.9805 0.3040 39 1 -1.6093 -3.9950 -1.1234 40 1 -1.3923 -4.7157 -3.2918 41 1 0.1931 -5.5419 -3.3859 42 1 -3.2315 -9.6808 -5.2590 43 1 -2.1239 -8.4748 -2.7163 44 1 -3.4302 -7.3817 -3.2480 45 1 -4.2647 -6.0896 -1.3628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958151063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:26 Heat of formation + Delta-G solvation = 37.486368 kcal Electronic energy + Delta-G solvation = -30016.861174 eV Core-core repulsion = 25843.411060 eV Total energy + Delta-G solvation = -4173.450114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.78115 -39.92296 -38.71633 -38.27575 -35.11312 -34.70974 -34.44755 -32.48686 -31.82680 -30.40684 -29.57598 -27.85633 -27.45858 -25.77747 -24.79582 -23.53759 -23.27140 -21.94999 -20.65792 -20.24544 -19.70581 -18.14644 -17.92388 -17.47110 -17.39550 -16.51622 -16.35027 -15.78627 -15.69737 -15.27457 -14.89789 -14.81048 -14.45415 -14.12840 -13.97052 -13.87536 -13.75422 -13.45304 -13.04939 -12.87945 -12.71847 -12.64492 -12.42640 -11.88961 -11.50802 -11.29339 -10.91134 -10.88467 -10.82393 -10.67639 -10.55786 -10.51456 -10.13930 -10.05829 -9.86467 -9.64933 -9.27701 -9.25775 -9.07206 -8.72011 -8.63911 -6.92873 -5.80374 -3.13617 0.14307 1.06573 2.15395 2.21885 2.68993 3.03625 3.34721 3.40778 3.42883 3.55417 3.75544 4.02199 4.14112 4.40732 4.41438 4.54755 4.63022 4.65445 4.76669 4.98936 5.03899 5.09595 5.23818 5.30042 5.32274 5.43010 5.47288 5.51433 5.73799 5.81032 5.93029 5.95451 6.01266 6.10335 6.25594 6.29120 6.35101 6.51478 6.62250 6.79747 7.28471 7.31432 7.36060 7.42370 7.63569 7.68766 8.00965 8.13793 8.16056 9.12573 9.73099 10.38005 11.31723 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.002499 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.895592 B =11203.926213 C =11950.490825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.476 5.476 3 C 0.262 3.738 4 N -0.479 5.479 5 C -0.016 4.016 6 C 0.195 3.805 7 N -0.487 5.487 8 C 0.135 3.865 9 C -0.171 4.171 10 C 0.561 3.439 11 O -0.540 6.540 12 N -0.714 5.714 13 C 0.141 3.859 14 C -0.110 4.110 15 H 0.090 0.910 16 C 0.145 3.855 17 N -0.603 5.603 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.153 3.847 27 C 0.083 3.917 28 H 0.058 0.942 29 O -0.565 6.565 30 C 0.120 3.880 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.221 0.779 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.403 0.597 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.037 0.963 42 H 0.252 0.748 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 15.399 12.685 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.163 5.163 3 C -0.025 4.025 4 N -0.198 5.198 5 C -0.137 4.137 6 C 0.029 3.971 7 N -0.197 5.197 8 C -0.017 4.017 9 C -0.180 4.180 10 C 0.347 3.653 11 O -0.419 6.419 12 N -0.364 5.364 13 C 0.018 3.982 14 C -0.130 4.130 15 H 0.109 0.891 16 C 0.019 3.981 17 N -0.329 5.329 18 C -0.355 4.355 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.028 3.972 27 C 0.023 3.977 28 H 0.075 0.925 29 O -0.371 6.371 30 C 0.000 4.000 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.237 0.763 35 H 0.187 0.813 36 H 0.186 0.814 37 H 0.238 0.762 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.425 15.912 12.934 22.168 hybrid contribution -1.614 -0.900 -1.200 2.203 sum 6.811 15.012 11.733 20.234 Atomic orbital electron populations 1.22300 0.74145 1.04271 1.05231 1.45266 1.08541 1.04886 1.57625 1.25616 0.84953 0.93616 0.98270 1.70480 1.18332 1.09889 1.21074 1.20155 0.92780 0.91625 1.09180 1.22315 0.98232 0.86239 0.90289 1.67708 1.23219 1.13845 1.14920 1.22790 0.85907 0.99881 0.93102 1.19916 0.95688 0.90334 1.12061 1.17917 0.87116 0.80730 0.79521 1.90771 1.47265 1.60232 1.43666 1.46107 1.13425 1.26760 1.50157 1.21242 0.81626 0.95312 1.00004 1.22698 0.97043 0.95901 0.97363 0.89132 1.21580 0.96181 0.91796 0.88574 1.44371 1.47355 1.30862 1.10301 1.19119 1.20172 1.09729 0.86506 0.90311 1.24800 0.99004 0.98159 0.98534 1.69937 1.30350 1.21685 1.35264 0.86020 0.77423 0.78174 0.84013 1.20466 1.21694 1.21737 1.21853 0.95297 0.94795 0.85263 1.23132 0.86383 0.89423 0.98749 0.92458 1.86387 1.17573 1.36117 1.96998 1.18658 0.91625 0.88620 1.01087 0.89495 0.89697 0.88792 0.76286 0.81303 0.81432 0.76248 0.91406 0.90234 0.95819 0.94495 0.93755 0.92908 0.93205 0.77716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 9.39 59.85 0.56 1.27 16 2 N -0.48 -4.89 3.18 -122.87 -0.39 -5.28 16 3 C 0.26 2.25 12.50 -89.57 -1.12 1.13 16 4 N -0.48 -5.39 11.28 -12.01 -0.14 -5.52 16 5 C -0.02 -0.20 7.27 -84.73 -0.62 -0.81 16 6 C 0.20 2.08 11.25 -17.12 -0.19 1.89 16 7 N -0.49 -5.50 10.30 -12.64 -0.13 -5.63 16 8 C 0.13 1.44 10.50 -17.08 -0.18 1.26 16 9 C -0.17 -2.06 5.79 -104.86 -0.61 -2.67 16 10 C 0.56 7.29 6.90 -12.47 -0.09 7.21 16 11 O -0.54 -8.14 13.21 5.28 0.07 -8.07 16 12 N -0.71 -8.64 5.42 -61.35 -0.33 -8.97 16 13 C 0.14 1.98 4.60 -4.04 -0.02 1.96 16 14 C -0.11 -1.74 2.98 -88.47 -0.26 -2.01 16 15 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.84 6.64 -2.53 -0.02 2.82 16 17 N -0.60 -14.77 3.39 -170.07 -0.58 -15.35 16 18 C -0.23 -6.17 10.28 -15.06 -0.15 -6.32 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -26.32 10.31 55.49 0.57 -25.75 16 22 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.15 3.48 5.14 -3.06 -0.02 3.46 16 27 C 0.08 1.43 4.09 -24.90 -0.10 1.33 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 O -0.56 -9.27 12.24 -35.23 -0.43 -9.70 16 30 C 0.12 1.48 6.77 -83.81 -0.57 0.92 16 31 H 0.09 0.80 7.79 -51.93 -0.40 0.39 16 32 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 33 H 0.09 1.03 6.10 -51.93 -0.32 0.72 16 34 H 0.22 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.17 1.37 7.69 -52.48 -0.40 0.97 16 37 H 0.40 4.19 7.75 -40.82 -0.32 3.88 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.28 7.55 -51.93 -0.39 0.89 16 40 H 0.02 0.50 7.91 -51.93 -0.41 0.09 16 41 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 44 H 0.05 1.26 7.43 -51.92 -0.39 0.88 16 45 H 0.38 4.85 9.12 45.56 0.42 5.26 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -34.92 371.47 -9.36 -44.28 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.10 Total: 6.63 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -3.47 Total: 11.09 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.99 Total: -66.50 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.36 Total: -17.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.92 -9.36 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.763 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds