Wall clock time and date at job start Wed Apr 1 2020 03:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36251 * 126.29854 * 2 1 4 4 N 1.30129 * 110.05146 * 180.02562 * 3 2 1 5 5 C 1.35702 * 109.49949 * 359.97438 * 4 3 2 6 6 C 1.39480 * 134.43105 * 180.02562 * 5 4 3 7 7 N 1.31765 * 120.63191 * 179.97438 * 6 5 4 8 8 C 1.31947 * 122.59819 * 0.02562 * 7 6 5 9 9 C 1.39368 * 121.02116 * 0.25278 * 8 7 6 10 10 C 1.47535 * 120.75254 * 179.74006 * 9 8 7 11 11 O 1.21593 * 119.99394 * 143.17558 * 10 9 8 12 12 N 1.34770 * 120.00363 * 323.17659 * 10 9 8 13 13 C 1.46500 * 120.00157 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47438 * 179.97438 * 13 12 10 15 15 H 1.09004 * 110.88288 * 51.11839 * 14 13 12 16 16 C 1.54908 * 111.00465 * 287.19817 * 14 13 12 17 17 N 1.47417 * 104.83187 * 204.91195 * 16 14 13 18 18 C 1.36939 * 125.64897 * 204.17419 * 17 16 14 19 19 H 1.07998 * 119.99913 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99872 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00123 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99790 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47306 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47171 * 120.00131 * 22 20 18 25 25 H 1.48501 * 109.47031 * 239.99897 * 22 20 18 26 26 C 1.47022 * 108.70297 * 24.12906 * 17 16 14 27 27 C 1.54325 * 107.27164 * 358.94133 * 26 17 16 28 28 H 1.09006 * 110.87183 * 219.37189 * 27 26 17 29 29 O 1.42899 * 110.72095 * 96.16845 * 27 26 17 30 30 C 1.36922 * 126.29460 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46789 * 263.70809 * 1 2 3 32 32 H 1.08997 * 109.46991 * 23.70453 * 1 2 3 33 33 H 1.09000 * 109.47066 * 143.70927 * 1 2 3 34 34 H 1.08004 * 124.97519 * 359.95767 * 3 2 1 35 35 H 1.08000 * 119.68138 * 0.02562 * 6 5 4 36 36 H 1.08003 * 119.48610 * 179.97438 * 8 7 6 37 37 H 0.97001 * 120.00102 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.46984 * 300.00257 * 13 12 10 39 39 H 1.09006 * 109.47121 * 59.99663 * 13 12 10 40 40 H 1.09003 * 110.36584 * 323.75525 * 16 14 13 41 41 H 1.09008 * 110.36674 * 86.07562 * 16 14 13 42 42 H 0.96996 * 119.99953 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.88358 * 239.51977 * 26 17 16 44 44 H 1.09008 * 110.01082 * 118.42871 * 26 17 16 45 45 H 0.96701 * 114.00281 * 66.47834 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0981 0.0000 4 7 3.5210 0.7340 -0.0005 5 6 3.5980 -0.6208 -0.0004 6 6 4.6478 -1.5392 -0.0003 7 7 4.4066 -2.8345 0.0004 8 6 3.1836 -3.3299 0.0006 9 6 2.0695 -2.4926 -0.0053 10 6 0.7048 -3.0529 -0.0108 11 8 -0.1805 -2.5033 0.6158 12 7 0.4393 -4.1738 -0.7104 13 6 -0.9158 -4.7305 -0.7154 14 6 -0.9455 -5.9929 -1.5795 15 1 -0.1521 -6.6815 -1.2886 16 6 -0.8500 -5.6381 -3.0843 17 7 -1.4827 -6.7731 -3.7805 18 6 -1.2415 -7.1504 -5.0746 19 1 -0.5346 -6.5975 -5.6754 20 6 -1.9057 -8.2434 -5.6142 21 7 -2.7677 -8.9169 -4.8821 22 14 -1.5762 -8.7584 -7.3793 23 1 -0.5732 -7.8445 -7.9826 24 1 -1.0553 -10.1489 -7.4002 25 1 -2.8385 -8.6910 -8.1585 26 6 -2.4147 -7.4336 -2.8550 27 6 -2.3337 -6.6822 -1.5094 28 1 -2.3765 -7.3791 -0.6723 29 8 -3.3764 -5.7102 -1.4095 30 6 2.2755 -1.1036 0.0005 31 1 -0.3633 -0.1126 1.0215 32 1 -0.3633 0.9409 -0.4131 33 1 -0.3633 -0.8283 -0.6083 34 1 1.9249 2.1210 -0.0007 35 1 5.6681 -1.1851 0.0001 36 1 3.0439 -4.4009 0.0007 37 1 1.1456 -4.6125 -1.2100 38 1 -1.2097 -4.9805 0.3040 39 1 -1.6093 -3.9950 -1.1234 40 1 -1.3923 -4.7157 -3.2918 41 1 0.1931 -5.5419 -3.3859 42 1 -3.2315 -9.6808 -5.2590 43 1 -2.1239 -8.4748 -2.7163 44 1 -3.4302 -7.3817 -3.2480 45 1 -4.2647 -6.0896 -1.3628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958151063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:25 Heat of formation + Delta-G solvation = 10.908151 kcal Electronic energy + Delta-G solvation = -30018.013692 eV Core-core repulsion = 25843.411060 eV Total energy + Delta-G solvation = -4174.602632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.54806 -40.96270 -39.88266 -39.38809 -36.41468 -36.16060 -35.24264 -34.02937 -32.92987 -31.46758 -30.87968 -29.44015 -28.23904 -27.29833 -25.98321 -24.83618 -24.07726 -22.90012 -22.13430 -21.54672 -20.90929 -19.19680 -18.94678 -18.71901 -18.39300 -17.95908 -17.22113 -16.83681 -16.81883 -16.55965 -16.16418 -15.79519 -15.66316 -15.43356 -15.27866 -14.90050 -14.69700 -14.67003 -14.39610 -14.31040 -13.69099 -13.64449 -13.47395 -13.16969 -13.14837 -13.02765 -12.70723 -12.32550 -12.10089 -11.92392 -11.80853 -11.76360 -11.67623 -11.50138 -11.32036 -10.80030 -10.73766 -10.57489 -10.17422 -10.04537 -9.44738 -8.91899 -7.87632 -5.22461 -0.66114 0.23050 1.34731 1.45484 1.45937 1.51905 1.56070 1.79230 2.03939 2.47444 2.72116 3.03446 3.24035 3.28139 3.35349 3.41925 3.55495 3.67645 3.76997 3.90001 3.93235 3.94666 3.99969 4.07461 4.33807 4.36944 4.43010 4.56466 4.58143 4.63729 4.73433 4.83230 4.89520 4.97162 4.99658 5.16730 5.26028 5.33505 5.38214 5.41569 5.52574 5.70139 5.95431 6.16807 6.38708 6.53655 6.83051 6.92567 7.03696 7.08517 7.74944 8.38662 9.22602 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.002499 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.895592 B =11203.926213 C =11950.490825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.482 5.482 3 C 0.275 3.725 4 N -0.506 5.506 5 C -0.032 4.032 6 C 0.194 3.806 7 N -0.499 5.499 8 C 0.138 3.862 9 C -0.186 4.186 10 C 0.566 3.434 11 O -0.563 6.563 12 N -0.707 5.707 13 C 0.159 3.841 14 C -0.093 4.093 15 H 0.110 0.890 16 C 0.142 3.858 17 N -0.624 5.624 18 C -0.240 4.240 19 H 0.081 0.919 20 C -0.065 4.065 21 N -0.950 5.950 22 Si 0.976 3.024 23 H -0.267 1.267 24 H -0.290 1.290 25 H -0.294 1.294 26 C 0.159 3.841 27 C 0.097 3.903 28 H 0.088 0.912 29 O -0.570 6.570 30 C 0.097 3.903 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.268 0.732 35 H 0.192 0.808 36 H 0.191 0.809 37 H 0.412 0.588 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.012 0.988 41 H 0.048 0.952 42 H 0.247 0.753 43 H 0.023 0.977 44 H 0.013 0.987 45 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 16.771 13.332 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.169 5.169 3 C -0.010 4.010 4 N -0.225 5.225 5 C -0.153 4.153 6 C 0.029 3.971 7 N -0.209 5.209 8 C -0.014 4.014 9 C -0.194 4.194 10 C 0.352 3.648 11 O -0.444 6.444 12 N -0.357 5.357 13 C 0.035 3.965 14 C -0.113 4.113 15 H 0.128 0.872 16 C 0.017 3.983 17 N -0.351 5.351 18 C -0.369 4.369 19 H 0.099 0.901 20 C -0.258 4.258 21 N -0.600 5.600 22 Si 0.805 3.195 23 H -0.191 1.191 24 H -0.217 1.217 25 H -0.222 1.222 26 C 0.034 3.966 27 C 0.036 3.964 28 H 0.106 0.894 29 O -0.378 6.378 30 C -0.024 4.024 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.086 0.914 34 H 0.283 0.717 35 H 0.209 0.791 36 H 0.208 0.792 37 H 0.249 0.751 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 9.511 17.307 13.588 23.972 hybrid contribution -1.959 -1.221 -1.405 2.702 sum 7.553 16.086 12.184 21.546 Atomic orbital electron populations 1.22303 0.73402 1.05294 1.04510 1.45500 1.09068 1.04820 1.57486 1.26592 0.84052 0.94882 0.95517 1.70485 1.19822 1.09492 1.22671 1.20418 0.92969 0.92260 1.09628 1.22720 0.99158 0.86046 0.89218 1.67784 1.23377 1.14185 1.15572 1.23151 0.85456 1.00816 0.91951 1.19884 0.95293 0.90627 1.13636 1.18030 0.87309 0.80441 0.78984 1.90759 1.48079 1.60845 1.44693 1.45947 1.12941 1.26675 1.50176 1.20910 0.82203 0.93748 0.99607 1.22590 0.96840 0.96961 0.94867 0.87156 1.21696 0.96072 0.89740 0.90755 1.44690 1.48079 1.32140 1.10160 1.19479 1.19804 1.09617 0.88024 0.90110 1.25599 0.99304 0.98607 1.02275 1.70144 1.31283 1.21923 1.36601 0.85040 0.77139 0.77696 0.79650 1.19131 1.21726 1.22169 1.21686 0.92903 0.94226 0.87824 1.22954 0.87372 0.89711 0.96317 0.89399 1.86368 1.18547 1.36169 1.96728 1.18989 0.92458 0.89315 1.01652 0.90267 0.85817 0.91354 0.71673 0.79117 0.79248 0.75101 0.90646 0.92214 0.97060 0.93324 0.94380 0.95891 0.96862 0.75970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 9.39 127.77 1.20 2.57 16 2 N -0.48 -9.17 3.18 -542.64 -1.73 -10.90 16 3 C 0.27 4.08 12.50 179.98 2.25 6.33 16 4 N -0.51 -10.59 11.28 -191.90 -2.16 -12.76 16 5 C -0.03 -0.73 7.27 39.47 0.29 -0.45 16 6 C 0.19 3.93 11.25 85.00 0.96 4.89 16 7 N -0.50 -10.67 10.30 -193.92 -2.00 -12.67 16 8 C 0.14 2.78 10.50 84.95 0.89 3.67 16 9 C -0.19 -4.31 5.79 -20.02 -0.12 -4.43 16 10 C 0.57 14.15 6.90 86.70 0.60 14.75 16 11 O -0.56 -16.64 13.21 -4.01 -0.05 -16.70 16 12 N -0.71 -15.97 5.42 -466.26 -2.53 -18.50 16 13 C 0.16 4.18 4.60 86.38 0.40 4.58 16 14 C -0.09 -2.78 2.98 -9.40 -0.03 -2.81 16 15 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 16 C 0.14 5.48 6.64 86.86 0.58 6.06 16 17 N -0.62 -30.88 3.39 -691.98 -2.35 -33.23 16 18 C -0.24 -13.18 10.28 84.03 0.86 -12.31 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 20 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 21 N -0.95 -55.57 10.31 21.65 0.22 -55.35 16 22 Si 0.98 45.06 29.55 68.60 2.03 47.09 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 C 0.16 7.36 5.14 86.73 0.45 7.80 16 27 C 0.10 3.20 4.09 31.78 0.13 3.33 16 28 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 29 O -0.57 -18.07 12.24 -148.98 -1.82 -19.89 16 30 C 0.10 2.30 6.77 39.50 0.27 2.57 16 31 H 0.08 1.38 7.79 -2.39 -0.02 1.36 16 32 H 0.12 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.07 1.47 6.10 -2.39 -0.01 1.46 16 34 H 0.27 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.19 2.73 7.69 -2.91 -0.02 2.71 16 37 H 0.41 7.76 7.75 -92.71 -0.72 7.04 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.86 7.55 -2.38 -0.02 1.84 16 40 H 0.01 0.48 7.91 -2.39 -0.02 0.46 16 41 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.02 1.18 7.38 -2.39 -0.02 1.17 16 44 H 0.01 0.70 7.43 -2.38 -0.02 0.68 16 45 H 0.39 9.70 9.12 -74.06 -0.68 9.03 16 Total: -1.00 -77.72 371.47 -1.54 -79.27 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.34 Total: 20.23 kcal Atomic # 6 Polarization: 24.21 SS G_CDS: 9.19 Total: 33.40 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -10.54 Total: -143.39 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.88 Total: -36.59 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -77.72 -1.54 -79.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.174 kcal (2) G-P(sol) polarization free energy of solvation -77.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds