Wall clock time and date at job start Wed Apr 1 2020 03:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36255 * 126.29944 * 2 1 4 4 N 1.30131 * 110.05134 * 180.02562 * 3 2 1 5 5 C 1.35701 * 109.49886 * 359.97438 * 4 3 2 6 6 C 1.39477 * 134.42934 * 180.02562 * 5 4 3 7 7 N 1.31770 * 120.63495 * 180.02562 * 6 5 4 8 8 C 1.31947 * 122.59823 * 359.97438 * 7 6 5 9 9 C 1.39374 * 121.01391 * 0.02562 * 8 7 6 10 10 C 1.47544 * 120.75212 * 180.02562 * 9 8 7 11 11 O 1.21590 * 120.00067 * 186.68109 * 10 9 8 12 12 N 1.34774 * 119.99878 * 6.67714 * 10 9 8 13 13 C 1.46501 * 120.00180 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47318 * 180.02562 * 13 12 10 15 15 H 1.09004 * 110.78132 * 51.76598 * 14 13 12 16 16 C 1.54337 * 110.85304 * 288.69674 * 14 13 12 17 17 N 1.47018 * 107.26666 * 219.67344 * 16 14 13 18 18 C 1.36944 * 125.65041 * 178.85255 * 17 16 14 19 19 H 1.07999 * 119.99419 * 347.19863 * 18 17 16 20 20 C 1.38812 * 120.00321 * 167.20300 * 18 17 16 21 21 N 1.31617 * 119.99582 * 154.62281 * 20 18 17 22 22 Si 1.86799 * 119.99830 * 334.62679 * 20 18 17 23 23 H 1.48494 * 109.47379 * 89.99773 * 22 20 18 24 24 H 1.48496 * 109.46732 * 210.00131 * 22 20 18 25 25 H 1.48505 * 109.47002 * 329.99563 * 22 20 18 26 26 C 1.47427 * 108.70307 * 358.58511 * 17 16 14 27 27 C 1.54901 * 104.83195 * 24.35729 * 26 17 16 28 28 H 1.08995 * 111.00870 * 81.06328 * 27 26 17 29 29 O 1.42901 * 111.00363 * 204.88037 * 27 26 17 30 30 C 1.36932 * 126.29556 * 180.27940 * 2 1 3 31 31 H 1.08995 * 109.47498 * 106.91115 * 1 2 3 32 32 H 1.09008 * 109.47021 * 226.90736 * 1 2 3 33 33 H 1.08998 * 109.47105 * 346.90044 * 1 2 3 34 34 H 1.08003 * 124.97240 * 0.02562 * 3 2 1 35 35 H 1.08005 * 119.68495 * 359.97235 * 6 5 4 36 36 H 1.07992 * 119.49463 * 180.02562 * 8 7 6 37 37 H 0.97005 * 120.00180 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.46499 * 60.00525 * 13 12 10 39 39 H 1.08992 * 109.47319 * 300.00861 * 13 12 10 40 40 H 1.09001 * 109.99201 * 100.19955 * 16 14 13 41 41 H 1.08997 * 109.77974 * 339.03053 * 16 14 13 42 42 H 0.96996 * 120.00118 * 5.08598 * 21 20 18 43 43 H 1.09003 * 110.36595 * 143.19822 * 26 17 16 44 44 H 1.08998 * 110.36336 * 265.40646 * 26 17 16 45 45 H 0.96699 * 113.99966 * 298.54148 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0981 0.0000 4 7 3.5210 0.7340 -0.0005 5 6 3.5979 -0.6208 -0.0004 6 6 4.6477 -1.5391 -0.0003 7 7 4.4066 -2.8346 -0.0006 8 6 3.1837 -3.3300 -0.0005 9 6 2.0696 -2.4926 -0.0006 10 6 0.7047 -3.0528 0.0001 11 8 -0.2549 -2.3162 -0.1225 12 7 0.5215 -4.3811 0.1365 13 6 -0.8337 -4.9374 0.1377 14 6 -0.7615 -6.4563 0.3067 15 1 -0.1487 -6.7208 1.1685 16 6 -0.2146 -7.1259 -0.9718 17 7 -0.9859 -8.3597 -1.1823 18 6 -0.8251 -9.2334 -2.2245 19 1 -0.2356 -8.9472 -3.0830 20 6 -1.4199 -10.4868 -2.1775 21 7 -1.7072 -11.1211 -3.2944 22 14 -1.8124 -11.2731 -0.5291 23 1 -3.1814 -10.8817 -0.1075 24 1 -1.7366 -12.7507 -0.6551 25 1 -0.8311 -10.8118 0.4855 26 6 -1.9567 -8.5038 -0.0822 27 6 -2.1838 -7.0624 0.4376 28 1 -2.8956 -6.5278 -0.1912 29 8 -2.6141 -7.0712 1.8003 30 6 2.2756 -1.1036 -0.0054 31 1 -0.3634 -0.2989 -0.9832 32 1 -0.3633 -0.7021 0.7505 33 1 -0.3633 1.0009 0.2329 34 1 1.9249 2.1210 0.0004 35 1 5.6681 -1.1851 -0.0008 36 1 3.0439 -4.4009 -0.0004 37 1 1.2871 -4.9687 0.2346 38 1 -1.3250 -4.6994 -0.8059 39 1 -1.4024 -4.5071 0.9620 40 1 0.8410 -7.3658 -0.8444 41 1 -0.3449 -6.4575 -1.8229 42 1 -1.4373 -10.7471 -4.1477 43 1 -2.8910 -8.9248 -0.4536 44 1 -1.5451 -9.1331 0.7068 45 1 -3.4544 -7.5276 1.9444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958151064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:29 Heat of formation + Delta-G solvation = 45.921911 kcal Electronic energy + Delta-G solvation = -29959.422037 eV Core-core repulsion = 25786.337716 eV Total energy + Delta-G solvation = -4173.084321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.83547 -40.06359 -38.84950 -38.51067 -35.57345 -35.06232 -34.41965 -32.71205 -32.00775 -30.64495 -29.93112 -27.96252 -27.51716 -26.12112 -24.78647 -23.29309 -23.21676 -21.95850 -21.25895 -20.43948 -19.86904 -18.14234 -18.08394 -17.65925 -17.46258 -17.21316 -16.51107 -16.06688 -15.65089 -15.48357 -15.23594 -15.07555 -14.67320 -14.49759 -13.99910 -13.89918 -13.74594 -13.71298 -13.37247 -12.99621 -12.69870 -12.64784 -12.52993 -12.34282 -12.27888 -11.35329 -11.25141 -11.00793 -10.99105 -10.83427 -10.72187 -10.47486 -10.19776 -10.00584 -9.66835 -9.51762 -9.33454 -9.30348 -9.23618 -8.68109 -8.57320 -7.20711 -6.41617 -3.30907 0.02155 1.00720 2.06229 2.20511 2.75996 2.86633 3.31801 3.45755 3.54919 3.59780 3.69566 3.94601 4.04509 4.23822 4.39625 4.50259 4.51312 4.57706 4.67426 4.71386 4.87528 4.98025 5.03658 5.17254 5.18564 5.22944 5.40895 5.47766 5.52609 5.56321 5.67748 5.72407 5.89143 5.92268 5.99337 6.03516 6.20985 6.29926 6.40407 6.47408 6.58209 6.60232 7.21723 7.24878 7.57448 7.57570 7.77778 7.92278 8.24677 8.93327 9.47860 10.13198 11.06291 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.002440 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.759668 B =11471.370897 C =12182.386121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.473 5.473 3 C 0.260 3.740 4 N -0.479 5.479 5 C -0.019 4.019 6 C 0.200 3.800 7 N -0.488 5.488 8 C 0.139 3.861 9 C -0.177 4.177 10 C 0.565 3.435 11 O -0.546 6.546 12 N -0.714 5.714 13 C 0.135 3.865 14 C -0.107 4.107 15 H 0.091 0.909 16 C 0.139 3.861 17 N -0.603 5.603 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.019 4.019 21 N -0.917 5.917 22 Si 1.064 2.936 23 H -0.295 1.295 24 H -0.297 1.297 25 H -0.286 1.286 26 C 0.078 3.922 27 C 0.098 3.902 28 H 0.071 0.929 29 O -0.565 6.565 30 C 0.125 3.875 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 22.803 10.023 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.160 5.160 3 C -0.027 4.027 4 N -0.198 5.198 5 C -0.141 4.141 6 C 0.034 3.966 7 N -0.198 5.198 8 C -0.013 4.013 9 C -0.185 4.185 10 C 0.352 3.648 11 O -0.427 6.427 12 N -0.364 5.364 13 C 0.012 3.988 14 C -0.126 4.126 15 H 0.110 0.890 16 C 0.013 3.987 17 N -0.332 5.332 18 C -0.459 4.459 19 H 0.095 0.905 20 C -0.220 4.220 21 N -0.557 5.557 22 Si 0.896 3.104 23 H -0.223 1.223 24 H -0.225 1.225 25 H -0.213 1.213 26 C -0.048 4.048 27 C 0.038 3.962 28 H 0.089 0.911 29 O -0.370 6.370 30 C 0.004 3.996 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.237 0.763 35 H 0.188 0.812 36 H 0.184 0.816 37 H 0.238 0.762 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.318 22.151 10.621 25.135 hybrid contribution -0.883 0.778 -0.844 1.448 sum 4.435 22.929 9.777 25.318 Atomic orbital electron populations 1.22505 0.73722 1.02974 1.06295 1.45318 1.08838 1.04704 1.57134 1.25632 0.84977 0.93657 0.98385 1.70479 1.18396 1.09840 1.21127 1.20176 0.92800 0.91685 1.09389 1.22361 0.98309 0.86214 0.89691 1.67724 1.23201 1.13848 1.15033 1.22807 0.86169 0.99821 0.92478 1.19901 0.95372 0.90311 1.12951 1.17963 0.88171 0.82291 0.76334 1.90750 1.42869 1.57887 1.51161 1.45968 1.10264 1.07040 1.73106 1.21443 0.82420 0.92324 1.02649 1.22456 0.97084 0.92863 1.00239 0.89036 1.21449 0.95028 0.89095 0.93100 1.44629 1.37882 1.24178 1.26499 1.20029 1.35662 0.95340 0.94885 0.90485 1.25894 0.97939 0.93685 1.04457 1.70905 1.42046 1.44986 0.97787 0.83842 0.75747 0.75669 0.75117 1.22273 1.22486 1.21332 1.22676 0.95063 0.95007 0.92056 1.22932 0.94360 0.96675 0.82247 0.91085 1.86416 1.43839 1.80213 1.26549 1.18680 0.91571 0.88688 1.00612 0.89764 0.87401 0.90626 0.76313 0.81206 0.81608 0.76249 0.90777 0.90733 0.94997 0.94730 0.92571 0.91898 0.94148 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 9.19 59.85 0.55 1.25 16 2 N -0.47 -4.63 3.18 -122.87 -0.39 -5.02 16 3 C 0.26 2.12 12.48 -89.56 -1.12 1.00 16 4 N -0.48 -5.20 11.28 -12.01 -0.14 -5.34 16 5 C -0.02 -0.22 7.27 -84.73 -0.62 -0.84 16 6 C 0.20 2.07 11.25 -17.12 -0.19 1.88 16 7 N -0.49 -5.42 10.30 -12.64 -0.13 -5.55 16 8 C 0.14 1.45 10.69 -17.08 -0.18 1.27 16 9 C -0.18 -2.04 5.89 -104.86 -0.62 -2.66 16 10 C 0.56 6.92 7.76 -12.47 -0.10 6.82 16 11 O -0.55 -7.44 11.20 5.29 0.06 -7.38 16 12 N -0.71 -8.05 5.42 -61.35 -0.33 -8.38 16 13 C 0.13 1.72 5.02 -4.04 -0.02 1.70 16 14 C -0.11 -1.58 2.69 -88.78 -0.24 -1.82 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 16 C 0.14 2.55 6.76 -3.06 -0.02 2.53 16 17 N -0.60 -14.05 3.27 -170.07 -0.56 -14.60 16 18 C -0.33 -9.20 10.43 -15.06 -0.16 -9.35 16 19 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 20 C -0.02 -0.54 5.41 -17.43 -0.09 -0.63 16 21 N -0.92 -28.07 13.70 55.49 0.76 -27.31 16 22 Si 1.06 25.82 24.69 -169.99 -4.20 21.62 16 23 H -0.29 -6.65 6.61 56.52 0.37 -6.28 16 24 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -6.64 6.28 56.52 0.35 -6.29 16 26 C 0.08 1.59 4.44 -2.53 -0.01 1.58 16 27 C 0.10 1.56 3.88 -24.58 -0.10 1.47 16 28 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 29 O -0.57 -7.95 13.47 -35.23 -0.47 -8.43 16 30 C 0.13 1.48 6.81 -83.81 -0.57 0.91 16 31 H 0.08 0.79 7.44 -51.93 -0.39 0.40 16 32 H 0.11 1.09 5.95 -51.92 -0.31 0.78 16 33 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.22 0.70 8.06 -52.48 -0.42 0.28 16 35 H 0.17 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.17 1.33 6.47 -52.49 -0.34 0.99 16 37 H 0.40 3.81 6.58 -40.82 -0.27 3.55 16 38 H 0.07 1.02 7.94 -51.92 -0.41 0.61 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.64 7.69 -51.93 -0.40 0.24 16 42 H 0.26 8.00 8.73 -40.82 -0.36 7.64 16 43 H 0.06 1.35 6.25 -51.93 -0.32 1.03 16 44 H 0.04 0.86 5.62 -51.93 -0.29 0.57 16 45 H 0.38 3.85 9.11 45.56 0.42 4.27 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -35.76 363.02 -8.33 -44.09 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.92 Total: 5.71 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -3.48 Total: 5.10 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -0.78 Total: -66.19 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.42 Total: -15.80 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -4.20 Total: 21.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.76 -8.33 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.007 kcal (2) G-P(sol) polarization free energy of solvation -35.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds