Wall clock time and date at job start Wed Apr 1 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36255 * 126.29944 * 2 1 4 4 N 1.30131 * 110.05134 * 180.02562 * 3 2 1 5 5 C 1.35701 * 109.49886 * 359.97438 * 4 3 2 6 6 C 1.39477 * 134.42934 * 180.02562 * 5 4 3 7 7 N 1.31770 * 120.63495 * 180.02562 * 6 5 4 8 8 C 1.31947 * 122.59823 * 359.97438 * 7 6 5 9 9 C 1.39374 * 121.01391 * 0.02562 * 8 7 6 10 10 C 1.47544 * 120.75212 * 180.02562 * 9 8 7 11 11 O 1.21590 * 120.00067 * 186.68109 * 10 9 8 12 12 N 1.34774 * 119.99878 * 6.67714 * 10 9 8 13 13 C 1.46501 * 120.00180 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47318 * 180.02562 * 13 12 10 15 15 H 1.09004 * 110.78132 * 51.76598 * 14 13 12 16 16 C 1.54337 * 110.85304 * 288.69674 * 14 13 12 17 17 N 1.47018 * 107.26666 * 219.67344 * 16 14 13 18 18 C 1.36944 * 125.65041 * 178.85255 * 17 16 14 19 19 H 1.07999 * 119.99419 * 347.19863 * 18 17 16 20 20 C 1.38812 * 120.00321 * 167.20300 * 18 17 16 21 21 N 1.31617 * 119.99582 * 154.62281 * 20 18 17 22 22 Si 1.86799 * 119.99830 * 334.62679 * 20 18 17 23 23 H 1.48494 * 109.47379 * 89.99773 * 22 20 18 24 24 H 1.48496 * 109.46732 * 210.00131 * 22 20 18 25 25 H 1.48505 * 109.47002 * 329.99563 * 22 20 18 26 26 C 1.47427 * 108.70307 * 358.58511 * 17 16 14 27 27 C 1.54901 * 104.83195 * 24.35729 * 26 17 16 28 28 H 1.08995 * 111.00870 * 81.06328 * 27 26 17 29 29 O 1.42901 * 111.00363 * 204.88037 * 27 26 17 30 30 C 1.36932 * 126.29556 * 180.27940 * 2 1 3 31 31 H 1.08995 * 109.47498 * 106.91115 * 1 2 3 32 32 H 1.09008 * 109.47021 * 226.90736 * 1 2 3 33 33 H 1.08998 * 109.47105 * 346.90044 * 1 2 3 34 34 H 1.08003 * 124.97240 * 0.02562 * 3 2 1 35 35 H 1.08005 * 119.68495 * 359.97235 * 6 5 4 36 36 H 1.07992 * 119.49463 * 180.02562 * 8 7 6 37 37 H 0.97005 * 120.00180 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.46499 * 60.00525 * 13 12 10 39 39 H 1.08992 * 109.47319 * 300.00861 * 13 12 10 40 40 H 1.09001 * 109.99201 * 100.19955 * 16 14 13 41 41 H 1.08997 * 109.77974 * 339.03053 * 16 14 13 42 42 H 0.96996 * 120.00118 * 5.08598 * 21 20 18 43 43 H 1.09003 * 110.36595 * 143.19822 * 26 17 16 44 44 H 1.08998 * 110.36336 * 265.40646 * 26 17 16 45 45 H 0.96699 * 113.99966 * 298.54148 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0981 0.0000 4 7 3.5210 0.7340 -0.0005 5 6 3.5979 -0.6208 -0.0004 6 6 4.6477 -1.5391 -0.0003 7 7 4.4066 -2.8346 -0.0006 8 6 3.1837 -3.3300 -0.0005 9 6 2.0696 -2.4926 -0.0006 10 6 0.7047 -3.0528 0.0001 11 8 -0.2549 -2.3162 -0.1225 12 7 0.5215 -4.3811 0.1365 13 6 -0.8337 -4.9374 0.1377 14 6 -0.7615 -6.4563 0.3067 15 1 -0.1487 -6.7208 1.1685 16 6 -0.2146 -7.1259 -0.9718 17 7 -0.9859 -8.3597 -1.1823 18 6 -0.8251 -9.2334 -2.2245 19 1 -0.2356 -8.9472 -3.0830 20 6 -1.4199 -10.4868 -2.1775 21 7 -1.7072 -11.1211 -3.2944 22 14 -1.8124 -11.2731 -0.5291 23 1 -3.1814 -10.8817 -0.1075 24 1 -1.7366 -12.7507 -0.6551 25 1 -0.8311 -10.8118 0.4855 26 6 -1.9567 -8.5038 -0.0822 27 6 -2.1838 -7.0624 0.4376 28 1 -2.8956 -6.5278 -0.1912 29 8 -2.6141 -7.0712 1.8003 30 6 2.2756 -1.1036 -0.0054 31 1 -0.3634 -0.2989 -0.9832 32 1 -0.3633 -0.7021 0.7505 33 1 -0.3633 1.0009 0.2329 34 1 1.9249 2.1210 0.0004 35 1 5.6681 -1.1851 -0.0008 36 1 3.0439 -4.4009 -0.0004 37 1 1.2871 -4.9687 0.2346 38 1 -1.3250 -4.6994 -0.8059 39 1 -1.4024 -4.5071 0.9620 40 1 0.8410 -7.3658 -0.8444 41 1 -0.3449 -6.4575 -1.8229 42 1 -1.4373 -10.7471 -4.1477 43 1 -2.8910 -8.9248 -0.4536 44 1 -1.5451 -9.1331 0.7068 45 1 -3.4544 -7.5276 1.9444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958151064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:28 Heat of formation + Delta-G solvation = 17.095949 kcal Electronic energy + Delta-G solvation = -29960.672025 eV Core-core repulsion = 25786.337716 eV Total energy + Delta-G solvation = -4174.334309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.56945 -41.03920 -40.02819 -39.45341 -36.78584 -36.33071 -35.17522 -34.38346 -33.10221 -31.82993 -30.94700 -29.46631 -28.23588 -27.46293 -25.82731 -24.59379 -24.04209 -22.96502 -22.67889 -21.57845 -21.04688 -19.62164 -18.93500 -18.85781 -18.48718 -18.33378 -17.29838 -17.13750 -16.73918 -16.51224 -16.32875 -15.97183 -15.88450 -15.54619 -15.52230 -15.23761 -14.75142 -14.66231 -14.59012 -14.22044 -13.98711 -13.80668 -13.64908 -13.36430 -13.22595 -13.06268 -12.71317 -12.36151 -12.25958 -11.81058 -11.76838 -11.68220 -11.55788 -11.40688 -11.25892 -10.96316 -10.61554 -10.52239 -10.19483 -10.07082 -9.45682 -9.19365 -8.65379 -5.47541 -0.75782 0.20177 1.30926 1.38199 1.53065 1.54248 1.68959 1.92896 1.93231 2.50179 2.73531 2.88179 3.00748 3.13716 3.20041 3.35698 3.42123 3.53665 3.67781 3.68814 3.80929 3.90410 3.97040 4.06524 4.22966 4.26777 4.32445 4.42607 4.49807 4.51313 4.66218 4.72571 4.78538 4.84001 4.92545 4.97111 4.99158 5.16943 5.21142 5.28308 5.34510 5.55438 5.97192 6.07968 6.33510 6.52316 6.76826 6.79932 6.83998 7.01457 7.43996 8.07559 8.82642 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.002440 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.759668 B =11471.370897 C =12182.386121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.478 5.478 3 C 0.274 3.726 4 N -0.507 5.507 5 C -0.034 4.034 6 C 0.198 3.802 7 N -0.503 5.503 8 C 0.139 3.861 9 C -0.189 4.189 10 C 0.564 3.436 11 O -0.562 6.562 12 N -0.708 5.708 13 C 0.148 3.852 14 C -0.090 4.090 15 H 0.104 0.896 16 C 0.136 3.864 17 N -0.626 5.626 18 C -0.320 4.320 19 H 0.044 0.956 20 C -0.076 4.076 21 N -0.954 5.954 22 Si 1.106 2.894 23 H -0.267 1.267 24 H -0.307 1.307 25 H -0.269 1.269 26 C 0.070 3.930 27 C 0.114 3.886 28 H 0.080 0.920 29 O -0.562 6.562 30 C 0.102 3.898 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.268 0.732 35 H 0.192 0.808 36 H 0.186 0.814 37 H 0.411 0.589 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.030 0.970 42 H 0.249 0.751 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 24.956 12.495 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.165 5.165 3 C -0.012 4.012 4 N -0.226 5.226 5 C -0.155 4.155 6 C 0.032 3.968 7 N -0.212 5.212 8 C -0.013 4.013 9 C -0.198 4.198 10 C 0.353 3.647 11 O -0.443 6.443 12 N -0.359 5.359 13 C 0.025 3.975 14 C -0.110 4.110 15 H 0.122 0.878 16 C 0.011 3.989 17 N -0.354 5.354 18 C -0.448 4.448 19 H 0.062 0.938 20 C -0.270 4.270 21 N -0.598 5.598 22 Si 0.932 3.068 23 H -0.193 1.193 24 H -0.236 1.236 25 H -0.194 1.194 26 C -0.056 4.056 27 C 0.053 3.947 28 H 0.098 0.902 29 O -0.370 6.370 30 C -0.019 4.019 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.283 0.717 35 H 0.209 0.791 36 H 0.203 0.797 37 H 0.248 0.752 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 5.022 24.348 13.125 28.112 hybrid contribution -0.743 0.250 -1.657 1.833 sum 4.279 24.598 11.468 27.475 Atomic orbital electron populations 1.22465 0.72899 1.04867 1.04737 1.45553 1.09388 1.04573 1.56963 1.26616 0.84061 0.94945 0.95547 1.70484 1.19943 1.09424 1.22762 1.20428 0.93014 0.92323 1.09764 1.22747 0.99250 0.85993 0.88764 1.67783 1.23437 1.14287 1.15739 1.23124 0.85835 1.00681 0.91656 1.19893 0.95126 0.90587 1.14156 1.18089 0.88352 0.82311 0.75996 1.90761 1.43407 1.58286 1.51884 1.45852 1.10098 1.06982 1.72978 1.21202 0.83127 0.90778 1.02412 1.22299 0.96509 0.93649 0.98497 0.87788 1.21588 0.95091 0.87278 0.94926 1.44683 1.39782 1.24625 1.26350 1.19904 1.33706 0.96038 0.95192 0.93768 1.27136 0.98664 0.94610 1.06614 1.71022 1.44882 1.45981 0.97886 0.83312 0.77545 0.74128 0.71847 1.19315 1.23562 1.19418 1.22829 0.93606 0.98141 0.90988 1.22661 0.95184 0.93540 0.83276 0.90179 1.86398 1.45328 1.80402 1.24853 1.19005 0.92380 0.89399 1.01151 0.91311 0.89350 0.86527 0.71663 0.79080 0.79715 0.75184 0.91728 0.90055 0.94331 0.95199 0.94199 0.93211 0.94093 0.75113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 9.19 127.77 1.17 2.49 16 2 N -0.48 -8.56 3.18 -542.64 -1.73 -10.29 16 3 C 0.27 3.79 12.48 179.98 2.25 6.04 16 4 N -0.51 -10.22 11.28 -191.90 -2.16 -12.39 16 5 C -0.03 -0.76 7.27 39.46 0.29 -0.48 16 6 C 0.20 3.94 11.25 85.00 0.96 4.89 16 7 N -0.50 -10.75 10.30 -193.91 -2.00 -12.74 16 8 C 0.14 2.78 10.69 84.95 0.91 3.69 16 9 C -0.19 -4.22 5.89 -20.02 -0.12 -4.34 16 10 C 0.56 13.23 7.76 86.70 0.67 13.90 16 11 O -0.56 -14.82 11.20 -4.00 -0.04 -14.86 16 12 N -0.71 -14.74 5.42 -466.27 -2.53 -17.27 16 13 C 0.15 3.45 5.02 86.38 0.43 3.88 16 14 C -0.09 -2.43 2.69 -9.60 -0.03 -2.46 16 15 H 0.10 2.61 8.14 -2.39 -0.02 2.60 16 16 C 0.14 4.82 6.76 86.73 0.59 5.41 16 17 N -0.63 -28.73 3.27 -691.98 -2.26 -30.99 16 18 C -0.32 -18.07 10.43 84.03 0.88 -17.20 16 19 H 0.04 2.72 8.06 -2.91 -0.02 2.69 16 20 C -0.08 -4.43 5.41 84.86 0.46 -3.97 16 21 N -0.95 -60.36 13.70 21.65 0.30 -60.06 16 22 Si 1.11 51.84 24.69 68.60 1.69 53.53 16 23 H -0.27 -11.23 6.61 99.48 0.66 -10.57 16 24 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 25 H -0.27 -11.65 6.28 99.48 0.62 -11.03 16 26 C 0.07 2.69 4.44 86.85 0.39 3.08 16 27 C 0.11 3.29 3.88 31.98 0.12 3.41 16 28 H 0.08 2.21 8.05 -2.39 -0.02 2.19 16 29 O -0.56 -13.59 13.47 -148.98 -2.01 -15.59 16 30 C 0.10 2.33 6.81 39.50 0.27 2.60 16 31 H 0.07 1.22 7.44 -2.39 -0.02 1.20 16 32 H 0.09 1.68 5.95 -2.38 -0.01 1.67 16 33 H 0.12 0.69 8.10 -2.39 -0.02 0.67 16 34 H 0.27 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.19 2.71 6.47 -2.91 -0.02 2.69 16 37 H 0.41 6.99 6.58 -92.70 -0.61 6.38 16 38 H 0.06 1.66 7.94 -2.38 -0.02 1.64 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.03 1.09 7.69 -2.39 -0.02 1.07 16 42 H 0.25 15.85 8.73 -92.71 -0.81 15.04 16 43 H 0.05 2.05 6.25 -2.39 -0.01 2.03 16 44 H 0.04 1.61 5.62 -2.39 -0.01 1.60 16 45 H 0.40 6.46 9.11 -74.06 -0.67 5.79 16 Total: -1.00 -79.84 363.02 -1.89 -81.73 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.39 Total: 17.98 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 9.23 Total: 20.95 kcal Atomic # 7 Polarization: -133.36 SS G_CDS: -10.38 Total: -143.74 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -2.05 Total: -30.45 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.69 Total: 53.53 kcal Total: -79.84 -1.89 -81.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.826 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds