Wall clock time and date at job start Wed Apr 1 2020 03:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36168 * 126.23759 * 2 1 4 4 N 1.30060 * 110.11094 * 180.02562 * 3 2 1 5 5 C 1.35770 * 109.43394 * 0.02562 * 4 3 2 6 6 C 1.39494 * 133.74251 * 180.28347 * 5 4 3 7 7 C 1.39679 * 118.05016 * 180.18192 * 6 5 4 8 8 C 1.47683 * 120.37955 * 179.78417 * 7 6 5 9 9 O 1.21577 * 120.00294 * 359.71638 * 8 7 6 10 10 N 1.34777 * 119.99983 * 179.71764 * 8 7 6 11 11 C 1.46496 * 120.00371 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47280 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.91790 * 51.10268 * 12 11 10 14 14 C 1.54904 * 111.00688 * 287.19860 * 12 11 10 15 15 N 1.47435 * 104.83391 * 204.91696 * 14 12 11 16 16 C 1.36934 * 125.64724 * 204.16628 * 15 14 12 17 17 H 1.08001 * 120.00082 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00122 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00256 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46807 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47389 * 119.99675 * 20 18 16 23 23 H 1.48506 * 109.47318 * 240.00098 * 20 18 16 24 24 C 1.47022 * 108.70089 * 24.12919 * 15 14 12 25 25 C 1.54322 * 107.27269 * 358.93984 * 24 15 14 26 26 H 1.09002 * 110.71963 * 219.44477 * 25 24 15 27 27 O 1.42896 * 110.71801 * 96.34675 * 25 24 15 28 28 C 1.39981 * 119.23302 * 359.50495 * 7 6 5 29 29 N 1.31390 * 121.16192 * 0.25235 * 28 7 6 30 30 C 1.32543 * 121.78896 * 0.02562 * 29 28 7 31 31 H 1.09003 * 109.46946 * 269.97835 * 1 2 3 32 32 H 1.09010 * 109.47069 * 29.97237 * 1 2 3 33 33 H 1.08996 * 109.47657 * 149.97083 * 1 2 3 34 34 H 1.07994 * 124.94654 * 0.04354 * 3 2 1 35 35 H 1.07996 * 120.97212 * 359.93716 * 6 5 4 36 36 H 0.97005 * 119.99874 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47035 * 60.00168 * 11 10 8 38 38 H 1.08997 * 109.47364 * 300.00303 * 11 10 8 39 39 H 1.08997 * 110.37110 * 86.08075 * 14 12 11 40 40 H 1.09005 * 110.37140 * 323.74975 * 14 12 11 41 41 H 0.96995 * 120.00311 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.87665 * 239.52284 * 24 15 14 43 43 H 1.08996 * 110.00949 * 118.43459 * 24 15 14 44 44 H 0.96702 * 113.99631 * 63.84596 * 27 25 24 45 45 H 1.08000 * 119.41896 * 180.23777 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0983 0.0000 4 7 3.5193 0.7370 -0.0005 5 6 3.5977 -0.6184 -0.0015 6 6 4.6594 -1.5232 0.0026 7 6 4.3598 -2.8874 -0.0041 8 6 5.4441 -3.8902 -0.0049 9 8 6.6053 -3.5300 -0.0050 10 7 5.1463 -5.2046 -0.0056 11 6 6.2217 -6.1994 -0.0071 12 6 5.6167 -7.6046 -0.0069 13 1 4.8748 -7.7089 -0.7987 14 6 5.0058 -7.9460 1.3750 15 7 5.0321 -9.4184 1.4459 16 6 4.2125 -10.1948 2.2209 17 1 3.4675 -9.7319 2.8510 18 6 4.3392 -11.5769 2.1965 19 7 5.2468 -12.1412 1.4282 20 14 3.2217 -12.6362 3.2542 21 1 2.2947 -11.7654 4.0209 22 1 2.4379 -13.5501 2.3850 23 1 4.0443 -13.4348 4.1979 24 6 6.0835 -9.9150 0.5462 25 6 6.7220 -8.6861 -0.1347 26 1 6.9383 -8.8947 -1.1824 27 8 7.9080 -8.2856 0.5545 28 6 3.0201 -3.2932 -0.0039 29 7 2.0435 -2.4142 -0.0026 30 6 2.2782 -1.1097 -0.0019 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8903 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 1.9216 2.1205 0.0007 35 1 5.6830 -1.1788 0.0067 36 1 4.2198 -5.4920 -0.0052 37 1 6.8380 -6.0695 0.8826 38 1 6.8368 -6.0683 -0.8973 39 1 3.9804 -7.5816 1.4370 40 1 5.6107 -7.5170 2.1738 41 1 5.3357 -13.1069 1.4115 42 1 5.6473 -10.5712 -0.2069 43 1 6.8380 -10.4562 1.1171 44 1 8.6149 -8.9453 0.5368 45 1 2.7851 -4.3473 -0.0052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958318531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:36 Heat of formation + Delta-G solvation = 41.471375 kcal Electronic energy + Delta-G solvation = -29230.746661 eV Core-core repulsion = 25057.469350 eV Total energy + Delta-G solvation = -4173.277311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.76213 -40.04503 -38.53332 -37.94597 -35.07019 -34.87376 -34.59168 -32.43151 -32.03559 -30.49900 -29.42993 -27.88396 -27.56447 -25.69352 -24.55921 -24.10824 -23.11076 -21.31890 -20.92010 -20.23037 -19.79949 -18.30397 -18.09448 -17.39811 -17.23713 -16.57257 -16.32367 -16.10689 -15.26092 -15.18845 -14.85927 -14.64250 -14.14488 -14.13087 -13.92437 -13.72347 -13.68524 -13.34470 -13.27834 -13.18488 -12.81353 -12.65295 -12.58689 -11.89430 -11.43418 -11.37108 -11.23573 -11.12070 -10.84770 -10.64486 -10.48966 -10.28394 -10.04576 -9.92664 -9.81192 -9.50535 -9.19549 -9.15881 -8.98615 -8.85721 -8.68175 -6.88238 -5.76440 -3.09409 0.40195 0.50605 1.86888 2.32782 2.78906 3.06596 3.37146 3.42989 3.45228 3.61596 3.63826 3.87203 4.11221 4.43111 4.44766 4.49267 4.61505 4.64120 4.66926 4.71713 4.93701 5.02866 5.13891 5.32220 5.39693 5.43628 5.53029 5.58764 5.68921 5.78416 5.90275 6.04888 6.08015 6.10650 6.36868 6.38464 6.43681 6.44979 6.60132 6.88221 7.25062 7.36981 7.40158 7.46901 7.50622 7.72804 8.18243 8.19023 8.23925 9.16605 9.77275 10.42641 11.35702 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.002222 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.628547 B =12600.321623 C =14190.993484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.485 5.485 3 C 0.271 3.729 4 N -0.480 5.480 5 C -0.009 4.009 6 C 0.048 3.952 7 C -0.197 4.197 8 C 0.567 3.433 9 O -0.536 6.536 10 N -0.720 5.720 11 C 0.141 3.859 12 C -0.110 4.110 13 H 0.090 0.910 14 C 0.144 3.856 15 N -0.603 5.603 16 C -0.225 4.225 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.925 5.925 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.153 3.847 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.564 6.564 28 C 0.176 3.824 29 N -0.483 5.483 30 C 0.254 3.746 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.224 0.776 35 H 0.156 0.844 36 H 0.399 0.601 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.252 0.748 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.376 0.624 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 23.534 -6.499 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.177 5.177 3 C -0.015 4.015 4 N -0.198 5.198 5 C -0.129 4.129 6 C 0.021 3.979 7 C -0.205 4.205 8 C 0.352 3.648 9 O -0.413 6.413 10 N -0.371 5.371 11 C 0.018 3.982 12 C -0.130 4.130 13 H 0.108 0.892 14 C 0.018 3.982 15 N -0.330 5.330 16 C -0.353 4.353 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.573 5.573 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.027 3.973 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.370 6.370 28 C 0.006 3.994 29 N -0.195 5.195 30 C 0.019 3.981 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.240 0.760 35 H 0.174 0.826 36 H 0.234 0.766 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.223 0.777 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.594 24.404 -6.334 26.332 hybrid contribution -0.781 -1.581 0.458 1.822 sum -8.375 22.823 -5.876 25.012 Atomic orbital electron populations 1.22076 0.74996 1.05102 1.04008 1.45082 1.07979 1.04560 1.60127 1.25507 0.84815 0.93133 0.98082 1.70499 1.18304 1.10271 1.20693 1.19546 0.92966 0.91521 1.08888 1.20861 0.99116 0.89552 0.88421 1.20711 0.95074 0.94261 1.10471 1.17755 0.87922 0.82224 0.76861 1.90800 1.20132 1.80465 1.49929 1.46016 1.10975 1.05473 1.74619 1.21228 0.88556 0.85264 1.03125 1.22692 0.97313 0.92413 1.00542 0.89199 1.21608 0.97236 0.86572 0.92832 1.44385 1.39265 0.99329 1.49981 1.19118 1.10802 0.87920 1.17497 0.90301 1.24798 0.99240 0.96540 1.00023 1.69937 1.35948 1.09376 1.42024 0.86026 0.79694 0.80424 0.79512 1.20491 1.21767 1.21763 1.21863 0.91392 0.90862 0.93139 1.23117 0.84803 0.95411 0.94390 0.92517 1.86395 1.25411 1.46628 1.78559 1.22783 0.86455 0.98483 0.91683 1.66368 1.37246 0.99068 1.16804 1.19119 0.89178 0.88148 1.01656 0.90338 0.89084 0.89010 0.75965 0.82611 0.76590 0.90071 0.91430 0.94457 0.95581 0.93788 0.92947 0.93241 0.77704 0.81167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.18 59.85 0.67 0.96 16 2 N -0.49 -3.77 3.19 -124.99 -0.40 -4.17 16 3 C 0.27 1.89 12.50 -89.70 -1.12 0.77 16 4 N -0.48 -5.30 11.29 -12.02 -0.14 -5.43 16 5 C -0.01 -0.12 7.23 -84.69 -0.61 -0.73 16 6 C 0.05 0.60 9.75 -38.58 -0.38 0.22 16 7 C -0.20 -2.37 5.89 -104.85 -0.62 -2.99 16 8 C 0.57 7.92 7.77 -12.40 -0.10 7.82 16 9 O -0.54 -9.35 16.40 5.30 0.09 -9.27 16 10 N -0.72 -9.15 5.45 -61.31 -0.33 -9.48 16 11 C 0.14 2.11 4.61 -4.05 -0.02 2.09 16 12 C -0.11 -1.79 2.98 -88.47 -0.26 -2.05 16 13 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 14 C 0.14 2.85 6.64 -2.53 -0.02 2.83 16 15 N -0.60 -14.93 3.39 -170.07 -0.58 -15.50 16 16 C -0.23 -6.14 10.28 -15.06 -0.15 -6.30 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.54 10.31 55.49 0.57 -25.97 16 20 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C 0.15 3.52 5.14 -3.06 -0.02 3.50 16 25 C 0.08 1.47 4.08 -24.89 -0.10 1.37 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 O -0.56 -9.67 12.26 -35.23 -0.43 -10.10 16 28 C 0.18 1.86 10.69 -17.09 -0.18 1.68 16 29 N -0.48 -5.57 10.37 -11.96 -0.12 -5.69 16 30 C 0.25 2.87 7.99 -155.64 -1.24 1.63 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.06 8.14 -51.92 -0.42 -0.37 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.22 0.36 8.06 -52.49 -0.42 -0.07 16 35 H 0.16 1.91 7.72 -52.49 -0.41 1.50 16 36 H 0.40 4.10 6.51 -40.82 -0.27 3.83 16 37 H 0.08 1.40 7.56 -51.93 -0.39 1.01 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.03 0.56 7.91 -51.93 -0.41 0.15 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 43 H 0.05 1.27 7.43 -51.93 -0.39 0.89 16 44 H 0.38 5.13 9.12 45.56 0.42 5.55 16 45 H 0.17 1.34 6.39 -52.49 -0.34 1.00 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -37.12 376.95 -10.02 -47.15 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.09 Total: 5.57 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -4.25 Total: 10.43 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -1.00 Total: -66.25 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.34 Total: -19.37 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.12 -10.02 -47.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958318531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.616 kcal (2) G-P(sol) polarization free energy of solvation -37.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds