Wall clock time and date at job start Wed Apr 1 2020 03:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36168 * 126.23759 * 2 1 4 4 N 1.30060 * 110.11094 * 180.02562 * 3 2 1 5 5 C 1.35770 * 109.43394 * 0.02562 * 4 3 2 6 6 C 1.39494 * 133.74251 * 180.28347 * 5 4 3 7 7 C 1.39679 * 118.05016 * 180.18192 * 6 5 4 8 8 C 1.47683 * 120.37955 * 179.78417 * 7 6 5 9 9 O 1.21577 * 120.00294 * 359.71638 * 8 7 6 10 10 N 1.34777 * 119.99983 * 179.71764 * 8 7 6 11 11 C 1.46496 * 120.00371 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47280 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.91790 * 51.10268 * 12 11 10 14 14 C 1.54904 * 111.00688 * 287.19860 * 12 11 10 15 15 N 1.47435 * 104.83391 * 204.91696 * 14 12 11 16 16 C 1.36934 * 125.64724 * 204.16628 * 15 14 12 17 17 H 1.08001 * 120.00082 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00122 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00256 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46807 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47389 * 119.99675 * 20 18 16 23 23 H 1.48506 * 109.47318 * 240.00098 * 20 18 16 24 24 C 1.47022 * 108.70089 * 24.12919 * 15 14 12 25 25 C 1.54322 * 107.27269 * 358.93984 * 24 15 14 26 26 H 1.09002 * 110.71963 * 219.44477 * 25 24 15 27 27 O 1.42896 * 110.71801 * 96.34675 * 25 24 15 28 28 C 1.39981 * 119.23302 * 359.50495 * 7 6 5 29 29 N 1.31390 * 121.16192 * 0.25235 * 28 7 6 30 30 C 1.32543 * 121.78896 * 0.02562 * 29 28 7 31 31 H 1.09003 * 109.46946 * 269.97835 * 1 2 3 32 32 H 1.09010 * 109.47069 * 29.97237 * 1 2 3 33 33 H 1.08996 * 109.47657 * 149.97083 * 1 2 3 34 34 H 1.07994 * 124.94654 * 0.04354 * 3 2 1 35 35 H 1.07996 * 120.97212 * 359.93716 * 6 5 4 36 36 H 0.97005 * 119.99874 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47035 * 60.00168 * 11 10 8 38 38 H 1.08997 * 109.47364 * 300.00303 * 11 10 8 39 39 H 1.08997 * 110.37110 * 86.08075 * 14 12 11 40 40 H 1.09005 * 110.37140 * 323.74975 * 14 12 11 41 41 H 0.96995 * 120.00311 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.87665 * 239.52284 * 24 15 14 43 43 H 1.08996 * 110.00949 * 118.43459 * 24 15 14 44 44 H 0.96702 * 113.99631 * 63.84596 * 27 25 24 45 45 H 1.08000 * 119.41896 * 180.23777 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0983 0.0000 4 7 3.5193 0.7370 -0.0005 5 6 3.5977 -0.6184 -0.0015 6 6 4.6594 -1.5232 0.0026 7 6 4.3598 -2.8874 -0.0041 8 6 5.4441 -3.8902 -0.0049 9 8 6.6053 -3.5300 -0.0050 10 7 5.1463 -5.2046 -0.0056 11 6 6.2217 -6.1994 -0.0071 12 6 5.6167 -7.6046 -0.0069 13 1 4.8748 -7.7089 -0.7987 14 6 5.0058 -7.9460 1.3750 15 7 5.0321 -9.4184 1.4459 16 6 4.2125 -10.1948 2.2209 17 1 3.4675 -9.7319 2.8510 18 6 4.3392 -11.5769 2.1965 19 7 5.2468 -12.1412 1.4282 20 14 3.2217 -12.6362 3.2542 21 1 2.2947 -11.7654 4.0209 22 1 2.4379 -13.5501 2.3850 23 1 4.0443 -13.4348 4.1979 24 6 6.0835 -9.9150 0.5462 25 6 6.7220 -8.6861 -0.1347 26 1 6.9383 -8.8947 -1.1824 27 8 7.9080 -8.2856 0.5545 28 6 3.0201 -3.2932 -0.0039 29 7 2.0435 -2.4142 -0.0026 30 6 2.2782 -1.1097 -0.0019 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8903 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 1.9216 2.1205 0.0007 35 1 5.6830 -1.1788 0.0067 36 1 4.2198 -5.4920 -0.0052 37 1 6.8380 -6.0695 0.8826 38 1 6.8368 -6.0683 -0.8973 39 1 3.9804 -7.5816 1.4370 40 1 5.6107 -7.5170 2.1738 41 1 5.3357 -13.1069 1.4115 42 1 5.6473 -10.5712 -0.2069 43 1 6.8380 -10.4562 1.1171 44 1 8.6149 -8.9453 0.5368 45 1 2.7851 -4.3473 -0.0052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958318531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:35 Heat of formation + Delta-G solvation = 13.548750 kcal Electronic energy + Delta-G solvation = -29231.957477 eV Core-core repulsion = 25057.469350 eV Total energy + Delta-G solvation = -4174.488127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.46811 -41.12608 -39.90374 -38.96781 -36.38526 -36.15077 -35.55601 -33.98712 -33.08547 -31.70065 -30.69926 -29.39781 -28.20536 -27.23587 -25.81746 -24.94989 -24.37634 -22.30476 -22.00561 -21.69464 -21.15023 -19.29713 -19.02835 -18.81827 -18.31312 -17.75535 -17.22033 -17.01917 -16.78561 -16.34286 -16.26960 -15.76955 -15.46048 -15.28024 -14.99089 -14.84899 -14.62478 -14.41039 -14.33550 -14.22489 -14.15598 -13.56507 -13.50005 -13.41246 -13.11459 -13.04892 -12.68897 -12.31056 -12.13175 -12.05127 -11.87757 -11.83678 -11.75381 -11.58525 -11.18529 -10.76718 -10.70796 -10.37733 -10.19294 -9.79910 -9.72313 -8.88705 -7.84660 -5.19294 -0.46338 -0.28411 1.30085 1.47123 1.48010 1.57980 1.64276 1.80722 2.00700 2.49932 2.71334 2.92905 3.26222 3.30231 3.38298 3.50186 3.58622 3.62029 3.73294 3.93149 3.95025 4.01361 4.05235 4.07745 4.30680 4.44332 4.47608 4.61910 4.67604 4.74838 4.76061 4.82854 4.88631 4.96713 5.01362 5.04405 5.30174 5.34009 5.43162 5.45013 5.55569 5.72826 5.89355 6.19593 6.45668 6.59317 6.61342 6.95308 7.11091 7.12696 7.77980 8.42126 9.25803 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.002222 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.628547 B =12600.321623 C =14190.993484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.482 5.482 3 C 0.295 3.705 4 N -0.524 5.524 5 C -0.028 4.028 6 C 0.033 3.967 7 C -0.201 4.201 8 C 0.571 3.429 9 O -0.576 6.576 10 N -0.708 5.708 11 C 0.156 3.844 12 C -0.092 4.092 13 H 0.113 0.887 14 C 0.140 3.860 15 N -0.625 5.625 16 C -0.237 4.237 17 H 0.083 0.917 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.977 3.023 21 H -0.266 1.266 22 H -0.291 1.291 23 H -0.296 1.296 24 C 0.159 3.841 25 C 0.095 3.905 26 H 0.087 0.913 27 O -0.571 6.571 28 C 0.177 3.823 29 N -0.490 5.490 30 C 0.239 3.761 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.278 0.722 35 H 0.146 0.854 36 H 0.413 0.587 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.246 0.754 42 H 0.024 0.976 43 H 0.013 0.987 44 H 0.390 0.610 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 25.654 -6.989 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.174 5.174 3 C 0.009 3.991 4 N -0.243 5.243 5 C -0.147 4.147 6 C 0.006 3.994 7 C -0.209 4.209 8 C 0.358 3.642 9 O -0.456 6.456 10 N -0.359 5.359 11 C 0.032 3.968 12 C -0.112 4.112 13 H 0.131 0.869 14 C 0.015 3.985 15 N -0.351 5.351 16 C -0.366 4.366 17 H 0.101 0.899 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.805 3.195 21 H -0.190 1.190 22 H -0.218 1.218 23 H -0.224 1.224 24 C 0.034 3.966 25 C 0.035 3.965 26 H 0.105 0.895 27 O -0.379 6.379 28 C 0.007 3.993 29 N -0.202 5.202 30 C 0.002 3.998 31 H 0.107 0.893 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.293 0.707 35 H 0.163 0.837 36 H 0.251 0.749 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.031 0.969 44 H 0.240 0.760 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.135 26.551 -6.823 29.227 hybrid contribution -0.062 -2.098 0.649 2.196 sum -10.197 24.453 -6.174 27.204 Atomic orbital electron populations 1.22404 0.72418 1.06630 1.05151 1.45472 1.09449 1.03513 1.58941 1.26619 0.83580 0.94727 0.94125 1.70492 1.20798 1.09658 1.23332 1.19713 0.93353 0.92358 1.09288 1.20879 0.99063 0.90193 0.89313 1.20501 0.95101 0.93510 1.11821 1.17977 0.87743 0.82605 0.75840 1.90778 1.21865 1.81086 1.51901 1.45827 1.11308 1.04779 1.74025 1.20915 0.88733 0.84798 1.02310 1.22591 0.96989 0.92609 0.98972 0.86894 1.21740 0.98354 0.83903 0.94482 1.44707 1.39195 1.01393 1.49801 1.19498 1.10967 0.88582 1.17547 0.89885 1.25612 1.00923 0.97863 1.01633 1.70147 1.37469 1.09055 1.43469 0.85031 0.77998 0.78626 0.77813 1.18993 1.21779 1.22353 1.21687 0.90245 0.92729 0.91961 1.22978 0.85048 0.93387 0.95134 0.89520 1.86378 1.25586 1.47214 1.78716 1.23120 0.85593 0.99581 0.90993 1.66455 1.37261 0.99365 1.17110 1.19456 0.89779 0.88812 1.01718 0.89344 0.85227 0.89885 0.70691 0.83670 0.74907 0.92390 0.90841 0.92620 0.97007 0.94446 0.95814 0.96925 0.76025 0.78622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.18 127.77 1.43 1.72 16 2 N -0.48 -6.21 3.19 -549.35 -1.75 -7.97 16 3 C 0.30 3.23 12.50 180.03 2.25 5.48 16 4 N -0.52 -11.01 11.29 -191.94 -2.17 -13.17 16 5 C -0.03 -0.67 7.23 39.46 0.29 -0.38 16 6 C 0.03 0.85 9.75 22.92 0.22 1.08 16 7 C -0.20 -4.82 5.89 -20.01 -0.12 -4.94 16 8 C 0.57 15.82 7.77 86.74 0.67 16.50 16 9 O -0.58 -20.48 16.40 -3.96 -0.06 -20.54 16 10 N -0.71 -17.00 5.45 -466.14 -2.54 -19.54 16 11 C 0.16 4.46 4.61 86.38 0.40 4.86 16 12 C -0.09 -2.84 2.98 -9.40 -0.03 -2.87 16 13 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 14 C 0.14 5.43 6.64 86.85 0.58 6.01 16 15 N -0.62 -31.06 3.39 -691.98 -2.35 -33.41 16 16 C -0.24 -12.99 10.28 84.03 0.86 -12.12 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 18 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 19 N -0.95 -56.08 10.31 21.65 0.22 -55.85 16 20 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 24 C 0.16 7.47 5.14 86.73 0.45 7.92 16 25 C 0.09 3.26 4.08 31.78 0.13 3.39 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 O -0.57 -19.18 12.26 -148.98 -1.83 -21.01 16 28 C 0.18 3.54 10.69 85.18 0.91 4.45 16 29 N -0.49 -10.65 10.37 -191.76 -1.99 -12.63 16 30 C 0.24 5.10 7.99 133.91 1.07 6.17 16 31 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.13 -0.47 8.14 -2.38 -0.02 -0.49 16 33 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.28 -0.51 8.06 -2.91 -0.02 -0.53 16 35 H 0.15 3.86 7.72 -2.91 -0.02 3.84 16 36 H 0.41 7.53 6.51 -92.70 -0.60 6.93 16 37 H 0.06 1.97 7.56 -2.39 -0.02 1.95 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.01 0.51 7.91 -2.38 -0.02 0.49 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.02 1.24 7.38 -2.39 -0.02 1.22 16 43 H 0.01 0.67 7.43 -2.39 -0.02 0.66 16 44 H 0.39 10.47 9.12 -74.06 -0.68 9.80 16 45 H 0.20 2.64 6.39 -2.91 -0.02 2.62 16 Total: -1.00 -84.15 376.95 -1.09 -85.24 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.22 Total: 17.74 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: 9.58 Total: 33.94 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -10.58 Total: -142.58 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.89 Total: -41.55 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -84.15 -1.09 -85.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958318531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.792 kcal (2) G-P(sol) polarization free energy of solvation -84.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds