Wall clock time and date at job start Wed Apr 1 2020 03:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36002 * 126.35254 * 2 1 4 4 N 1.30288 * 110.05050 * 179.97438 * 3 2 1 5 5 C 1.34648 * 109.67086 * 359.56055 * 4 3 2 6 6 C 1.37937 * 126.36201 * 179.32966 * 2 1 3 7 7 N 1.32120 * 133.80605 * 359.95269 * 6 2 1 8 8 C 1.31722 * 121.94685 * 180.02562 * 7 6 2 9 9 C 1.38334 * 121.55214 * 0.02562 * 8 7 6 10 10 C 1.39644 * 119.37241 * 359.97438 * 9 8 7 11 11 C 1.47765 * 121.07385 * 179.97438 * 10 9 8 12 12 O 1.21556 * 119.99977 * 179.97438 * 11 10 9 13 13 N 1.34775 * 119.99888 * 359.97438 * 11 10 9 14 14 C 1.46498 * 119.99938 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47008 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.63732 * 303.30629 * 15 14 13 17 17 C 1.54316 * 110.72321 * 66.45296 * 15 14 13 18 18 N 1.47025 * 107.40555 * 140.47641 * 17 15 14 19 19 C 1.36937 * 125.65003 * 181.09700 * 18 17 15 20 20 H 1.07997 * 120.00004 * 162.02702 * 19 18 17 21 21 C 1.38808 * 120.00145 * 342.03398 * 19 18 17 22 22 N 1.31622 * 120.00079 * 156.33136 * 21 19 18 23 23 Si 1.86806 * 120.00152 * 336.33298 * 21 19 18 24 24 H 1.48507 * 109.46933 * 84.67395 * 23 21 19 25 25 H 1.48498 * 109.47130 * 204.67578 * 23 21 19 26 26 H 1.48499 * 109.46689 * 324.67567 * 23 21 19 27 27 C 1.47745 * 108.52686 * 1.18306 * 18 17 15 28 28 C 1.54912 * 104.83888 * 335.74810 * 27 18 17 29 29 H 1.08999 * 111.04088 * 279.00300 * 28 27 18 30 30 O 1.42901 * 111.00286 * 155.17000 * 28 27 18 31 31 H 1.09000 * 109.46988 * 270.67118 * 1 2 3 32 32 H 1.09000 * 109.47021 * 30.66930 * 1 2 3 33 33 H 1.09000 * 109.46952 * 150.67403 * 1 2 3 34 34 H 1.07992 * 124.97348 * 359.49462 * 3 2 1 35 35 H 1.08005 * 119.22514 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.31693 * 179.97438 * 9 8 7 37 37 H 0.97006 * 120.00066 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47452 * 60.00093 * 14 13 11 39 39 H 1.08999 * 109.46967 * 299.99698 * 14 13 11 40 40 H 1.09006 * 109.88412 * 259.97361 * 17 15 14 41 41 H 1.08998 * 109.88450 * 20.97892 * 17 15 14 42 42 H 0.97001 * 119.99918 * 179.97438 * 22 21 19 43 43 H 1.08996 * 110.28824 * 216.94377 * 27 18 17 44 44 H 1.09003 * 110.52600 * 94.67322 * 27 18 17 45 45 H 0.96703 * 114.00374 * 67.79996 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0953 0.0000 4 7 3.5217 0.7296 0.0005 5 6 3.6008 -0.6145 0.0107 6 6 2.2828 -1.1107 0.0130 7 7 2.0572 -2.4124 0.0290 8 6 3.0395 -3.2900 0.0396 9 6 4.3647 -2.8932 0.0349 10 6 4.6718 -1.5310 0.0181 11 6 6.0741 -1.0654 0.0132 12 8 6.3192 0.1252 -0.0019 13 7 7.0815 -1.9606 0.0256 14 6 8.4718 -1.4989 0.0213 15 6 9.4104 -2.7071 0.0368 16 1 9.2030 -3.3438 0.8969 17 6 9.2913 -3.5081 -1.2768 18 7 10.6454 -3.9398 -1.6531 19 6 10.9719 -4.6589 -2.7718 20 1 11.9943 -4.6833 -3.1187 21 6 9.9887 -5.3564 -3.4599 22 7 10.1575 -5.6491 -4.7320 23 14 8.4258 -5.8798 -2.5806 24 1 7.4509 -4.7596 -2.5952 25 1 7.8391 -7.0558 -3.2718 26 1 8.7452 -6.2397 -1.1757 27 6 11.5920 -3.4691 -0.6210 28 6 10.8933 -2.2504 0.0320 29 1 11.0239 -1.3536 -0.5736 30 8 11.3687 -2.0399 1.3630 31 1 -0.3633 0.0120 1.0276 32 1 -0.3633 0.8839 -0.5242 33 1 -0.3633 -0.8960 -0.5033 34 1 1.9254 2.1184 -0.0078 35 1 2.8047 -4.3441 0.0521 36 1 5.1544 -3.6299 0.0442 37 1 6.8859 -2.9107 0.0373 38 1 8.6538 -0.8857 0.9038 39 1 8.6557 -0.9081 -0.8760 40 1 8.6538 -4.3789 -1.1236 41 1 8.8728 -2.8758 -2.0599 42 1 9.4706 -6.1369 -5.2128 43 1 12.5325 -3.1657 -1.0808 44 1 11.7672 -4.2483 0.1208 45 1 12.2911 -1.7533 1.4106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958399631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:42 Heat of formation + Delta-G solvation = 54.425316 kcal Electronic energy + Delta-G solvation = -29930.529820 eV Core-core repulsion = 25757.814234 eV Total energy + Delta-G solvation = -4172.715586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.69602 -39.85709 -38.71318 -38.20150 -35.51896 -34.86545 -34.64409 -32.66424 -32.02441 -30.24861 -30.03183 -28.04164 -27.54749 -26.14433 -24.80383 -23.49261 -23.20560 -21.95441 -20.76708 -20.43220 -19.87631 -18.28793 -17.78874 -17.55918 -17.28196 -16.98581 -16.48541 -15.80546 -15.55866 -15.36538 -14.94936 -14.88410 -14.46402 -14.21821 -13.96976 -13.82015 -13.68697 -13.60709 -13.22102 -13.04912 -12.84349 -12.75936 -12.70456 -12.12606 -11.92003 -11.66703 -11.37225 -11.08301 -11.03843 -10.95660 -10.56495 -10.45904 -10.15688 -10.00967 -9.71861 -9.40395 -9.35712 -9.09637 -8.95045 -8.76304 -8.68332 -7.16055 -6.01315 -3.31384 0.14731 0.86479 1.96457 2.48547 2.87274 3.04463 3.25430 3.38876 3.43876 3.69620 3.74883 3.96750 4.20506 4.28956 4.43710 4.48178 4.53841 4.63571 4.69865 4.76154 4.87381 4.95289 4.99925 5.07906 5.17249 5.23128 5.40735 5.51996 5.56632 5.61081 5.63961 5.75261 5.81608 5.99416 6.11168 6.24582 6.28304 6.38210 6.48963 6.56213 6.56857 6.64722 7.45645 7.49832 7.52412 7.59167 7.82431 8.23007 8.24176 8.74828 9.61118 10.07628 11.14919 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003010 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.942651 B = 9301.390999 C =10742.682329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.487 5.487 3 C 0.272 3.728 4 N -0.462 5.462 5 C 0.054 3.946 6 C 0.231 3.769 7 N -0.467 5.467 8 C 0.134 3.866 9 C -0.149 4.149 10 C -0.032 4.032 11 C 0.553 3.447 12 O -0.504 6.504 13 N -0.721 5.721 14 C 0.135 3.865 15 C -0.106 4.106 16 H 0.091 0.909 17 C 0.124 3.876 18 N -0.605 5.605 19 C -0.245 4.245 20 H 0.094 0.906 21 C 0.022 3.978 22 N -0.904 5.904 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.302 1.302 26 H -0.278 1.278 27 C 0.105 3.895 28 C 0.097 3.903 29 H 0.073 0.927 30 O -0.563 6.563 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.224 0.776 35 H 0.174 0.826 36 H 0.149 0.851 37 H 0.400 0.600 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.053 0.947 44 H 0.035 0.965 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.509 10.097 12.724 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.179 5.179 3 C -0.014 4.014 4 N -0.179 5.179 5 C -0.070 4.070 6 C -0.005 4.005 7 N -0.180 5.180 8 C -0.032 4.032 9 C -0.172 4.172 10 C -0.045 4.045 11 C 0.338 3.662 12 O -0.378 6.378 13 N -0.374 5.374 14 C 0.012 3.988 15 C -0.125 4.125 16 H 0.109 0.891 17 C -0.001 4.001 18 N -0.333 5.333 19 C -0.372 4.372 20 H 0.112 0.888 21 C -0.176 4.176 22 N -0.547 5.547 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.230 1.230 26 H -0.205 1.205 27 C -0.021 4.021 28 C 0.037 3.963 29 H 0.091 0.909 30 O -0.368 6.368 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.241 0.759 35 H 0.191 0.809 36 H 0.167 0.833 37 H 0.235 0.765 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -18.267 10.993 12.608 24.768 hybrid contribution -0.448 -1.104 0.178 1.204 sum -18.715 9.889 12.786 24.729 Atomic orbital electron populations 1.22028 0.75156 1.05006 1.03735 1.45129 1.07758 1.04547 1.60504 1.25742 0.84799 0.93259 0.97596 1.70360 1.17411 1.10538 1.19611 1.19168 0.91873 0.91355 1.04588 1.18932 0.88928 0.88086 1.04566 1.66174 1.38105 0.99450 1.14269 1.22520 0.86992 0.98560 0.95151 1.22261 0.99082 0.94703 1.01165 1.19683 0.92630 0.92019 1.00131 1.17897 0.84168 0.86259 0.77845 1.90842 1.84272 1.15381 1.47350 1.45921 1.06372 1.09855 1.75251 1.21413 0.78529 0.96047 1.02847 1.22426 0.93691 0.96556 0.99853 0.89088 1.21753 0.89514 0.95705 0.93109 1.44675 1.01285 1.63678 1.23697 1.18642 0.96896 1.23308 0.98324 0.88826 1.24962 0.97818 0.99201 0.95667 1.69853 1.35465 1.42527 1.06870 0.86930 0.84314 0.77781 0.79480 1.21080 1.23028 1.20471 1.22302 0.94073 0.94087 0.91610 1.22942 0.92955 0.97613 0.82807 0.90945 1.86456 1.32304 1.90834 1.27220 0.90543 0.89106 0.89204 0.75948 0.80855 0.83319 0.76526 0.90621 0.90762 0.95491 0.93457 0.92602 0.92910 0.94677 0.77542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 11.20 59.85 0.67 1.06 16 2 N -0.49 -4.58 3.20 -124.98 -0.40 -4.98 16 3 C 0.27 2.58 12.50 -89.67 -1.12 1.46 16 4 N -0.46 -6.83 10.63 -11.88 -0.13 -6.96 16 5 C 0.05 0.82 6.85 -84.62 -0.58 0.24 16 6 C 0.23 2.97 8.02 -155.64 -1.25 1.72 16 7 N -0.47 -5.67 10.35 -12.30 -0.13 -5.80 16 8 C 0.13 1.39 11.14 -17.56 -0.20 1.19 16 9 C -0.15 -1.70 9.60 -39.02 -0.37 -2.08 16 10 C -0.03 -0.47 5.93 -104.45 -0.62 -1.09 16 11 C 0.55 9.19 7.79 -12.37 -0.10 9.09 16 12 O -0.50 -10.02 16.19 5.32 0.09 -9.94 16 13 N -0.72 -10.78 5.36 -61.28 -0.33 -11.10 16 14 C 0.13 2.09 4.99 -4.04 -0.02 2.07 16 15 C -0.11 -1.75 2.75 -88.79 -0.24 -2.00 16 16 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 17 C 0.12 2.58 4.43 -3.07 -0.01 2.57 16 18 N -0.61 -14.24 3.22 -169.82 -0.55 -14.78 16 19 C -0.25 -6.82 10.58 -15.06 -0.16 -6.98 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 21 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 22 N -0.90 -27.54 13.97 55.49 0.78 -26.76 16 23 Si 0.88 21.79 24.39 -169.99 -4.15 17.64 16 24 H -0.28 -6.58 6.84 56.52 0.39 -6.20 16 25 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 26 H -0.28 -6.69 6.87 56.52 0.39 -6.31 16 27 C 0.11 1.99 6.99 -2.35 -0.02 1.97 16 28 C 0.10 1.53 3.88 -24.58 -0.10 1.43 16 29 H 0.07 1.09 8.05 -51.93 -0.42 0.68 16 30 O -0.56 -7.75 13.47 -35.23 -0.47 -8.22 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.22 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 36 H 0.15 1.35 6.53 -52.49 -0.34 1.01 16 37 H 0.40 5.25 6.47 -40.82 -0.26 4.98 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 40 H 0.03 0.60 3.52 -51.93 -0.18 0.41 16 41 H 0.05 1.05 7.76 -51.93 -0.40 0.64 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.38 3.47 9.12 45.56 0.42 3.89 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -39.42 372.67 -8.89 -48.30 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.00 Total: 5.76 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -4.21 Total: 11.22 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -0.75 Total: -70.38 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.39 Total: -18.16 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.15 Total: 17.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.42 -8.89 -48.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958399631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.729 kcal (2) G-P(sol) polarization free energy of solvation -39.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds