Wall clock time and date at job start Wed Apr 1 2020 03:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36002 * 126.35254 * 2 1 4 4 N 1.30288 * 110.05050 * 179.97438 * 3 2 1 5 5 C 1.34648 * 109.67086 * 359.56055 * 4 3 2 6 6 C 1.37937 * 126.36201 * 179.32966 * 2 1 3 7 7 N 1.32120 * 133.80605 * 359.95269 * 6 2 1 8 8 C 1.31722 * 121.94685 * 180.02562 * 7 6 2 9 9 C 1.38334 * 121.55214 * 0.02562 * 8 7 6 10 10 C 1.39644 * 119.37241 * 359.97438 * 9 8 7 11 11 C 1.47765 * 121.07385 * 179.97438 * 10 9 8 12 12 O 1.21556 * 119.99977 * 179.97438 * 11 10 9 13 13 N 1.34775 * 119.99888 * 359.97438 * 11 10 9 14 14 C 1.46498 * 119.99938 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47008 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.63732 * 303.30629 * 15 14 13 17 17 C 1.54316 * 110.72321 * 66.45296 * 15 14 13 18 18 N 1.47025 * 107.40555 * 140.47641 * 17 15 14 19 19 C 1.36937 * 125.65003 * 181.09700 * 18 17 15 20 20 H 1.07997 * 120.00004 * 162.02702 * 19 18 17 21 21 C 1.38808 * 120.00145 * 342.03398 * 19 18 17 22 22 N 1.31622 * 120.00079 * 156.33136 * 21 19 18 23 23 Si 1.86806 * 120.00152 * 336.33298 * 21 19 18 24 24 H 1.48507 * 109.46933 * 84.67395 * 23 21 19 25 25 H 1.48498 * 109.47130 * 204.67578 * 23 21 19 26 26 H 1.48499 * 109.46689 * 324.67567 * 23 21 19 27 27 C 1.47745 * 108.52686 * 1.18306 * 18 17 15 28 28 C 1.54912 * 104.83888 * 335.74810 * 27 18 17 29 29 H 1.08999 * 111.04088 * 279.00300 * 28 27 18 30 30 O 1.42901 * 111.00286 * 155.17000 * 28 27 18 31 31 H 1.09000 * 109.46988 * 270.67118 * 1 2 3 32 32 H 1.09000 * 109.47021 * 30.66930 * 1 2 3 33 33 H 1.09000 * 109.46952 * 150.67403 * 1 2 3 34 34 H 1.07992 * 124.97348 * 359.49462 * 3 2 1 35 35 H 1.08005 * 119.22514 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.31693 * 179.97438 * 9 8 7 37 37 H 0.97006 * 120.00066 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47452 * 60.00093 * 14 13 11 39 39 H 1.08999 * 109.46967 * 299.99698 * 14 13 11 40 40 H 1.09006 * 109.88412 * 259.97361 * 17 15 14 41 41 H 1.08998 * 109.88450 * 20.97892 * 17 15 14 42 42 H 0.97001 * 119.99918 * 179.97438 * 22 21 19 43 43 H 1.08996 * 110.28824 * 216.94377 * 27 18 17 44 44 H 1.09003 * 110.52600 * 94.67322 * 27 18 17 45 45 H 0.96703 * 114.00374 * 67.79996 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0953 0.0000 4 7 3.5217 0.7296 0.0005 5 6 3.6008 -0.6145 0.0107 6 6 2.2828 -1.1107 0.0130 7 7 2.0572 -2.4124 0.0290 8 6 3.0395 -3.2900 0.0396 9 6 4.3647 -2.8932 0.0349 10 6 4.6718 -1.5310 0.0181 11 6 6.0741 -1.0654 0.0132 12 8 6.3192 0.1252 -0.0019 13 7 7.0815 -1.9606 0.0256 14 6 8.4718 -1.4989 0.0213 15 6 9.4104 -2.7071 0.0368 16 1 9.2030 -3.3438 0.8969 17 6 9.2913 -3.5081 -1.2768 18 7 10.6454 -3.9398 -1.6531 19 6 10.9719 -4.6589 -2.7718 20 1 11.9943 -4.6833 -3.1187 21 6 9.9887 -5.3564 -3.4599 22 7 10.1575 -5.6491 -4.7320 23 14 8.4258 -5.8798 -2.5806 24 1 7.4509 -4.7596 -2.5952 25 1 7.8391 -7.0558 -3.2718 26 1 8.7452 -6.2397 -1.1757 27 6 11.5920 -3.4691 -0.6210 28 6 10.8933 -2.2504 0.0320 29 1 11.0239 -1.3536 -0.5736 30 8 11.3687 -2.0399 1.3630 31 1 -0.3633 0.0120 1.0276 32 1 -0.3633 0.8839 -0.5242 33 1 -0.3633 -0.8960 -0.5033 34 1 1.9254 2.1184 -0.0078 35 1 2.8047 -4.3441 0.0521 36 1 5.1544 -3.6299 0.0442 37 1 6.8859 -2.9107 0.0373 38 1 8.6538 -0.8857 0.9038 39 1 8.6557 -0.9081 -0.8760 40 1 8.6538 -4.3789 -1.1236 41 1 8.8728 -2.8758 -2.0599 42 1 9.4706 -6.1369 -5.2128 43 1 12.5325 -3.1657 -1.0808 44 1 11.7672 -4.2483 0.1208 45 1 12.2911 -1.7533 1.4106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958399631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:41 Heat of formation + Delta-G solvation = 22.666333 kcal Electronic energy + Delta-G solvation = -29931.906993 eV Core-core repulsion = 25757.814234 eV Total energy + Delta-G solvation = -4174.092759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.50061 -41.06597 -40.00082 -39.20616 -36.82152 -36.18091 -35.52895 -34.24919 -33.34415 -31.75534 -30.86433 -29.60169 -28.08661 -27.63193 -26.03398 -24.89145 -24.04470 -23.05579 -22.24173 -21.83778 -20.97748 -19.24087 -18.99154 -18.70794 -18.49720 -18.38277 -17.26077 -17.13518 -16.93856 -16.49111 -16.20649 -15.86139 -15.70145 -15.44621 -15.34602 -14.96360 -14.86593 -14.68618 -14.42314 -14.24278 -13.80871 -13.71680 -13.59857 -13.49401 -13.42688 -13.39218 -12.85544 -12.74510 -12.24789 -11.99421 -11.92839 -11.84121 -11.80351 -11.43055 -11.22288 -10.98351 -10.71421 -10.30080 -10.26669 -9.82678 -9.64312 -9.12380 -8.19541 -5.46798 -0.76597 0.02785 1.28375 1.31238 1.39616 1.50431 1.61702 1.83853 1.90392 2.41752 2.74104 2.86614 3.00388 3.14821 3.27246 3.36225 3.42192 3.57418 3.59914 3.66227 3.85773 3.95971 4.03282 4.15382 4.25542 4.28608 4.34385 4.42146 4.43638 4.54786 4.68597 4.71180 4.74219 4.78405 4.81961 4.92401 5.02222 5.06100 5.15743 5.26504 5.45712 5.63029 5.91182 6.07766 6.33854 6.66798 6.69971 6.70790 6.90557 7.04179 7.49698 8.04308 9.00186 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003010 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.942651 B = 9301.390999 C =10742.682329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.482 5.482 3 C 0.290 3.710 4 N -0.525 5.525 5 C 0.024 3.976 6 C 0.213 3.787 7 N -0.471 5.471 8 C 0.133 3.867 9 C -0.137 4.137 10 C -0.068 4.068 11 C 0.553 3.447 12 O -0.548 6.548 13 N -0.714 5.714 14 C 0.143 3.857 15 C -0.092 4.092 16 H 0.105 0.895 17 C 0.121 3.879 18 N -0.624 5.624 19 C -0.240 4.240 20 H 0.061 0.939 21 C -0.041 4.041 22 N -0.954 5.954 23 Si 0.948 3.052 24 H -0.261 1.261 25 H -0.309 1.309 26 H -0.264 1.264 27 C 0.101 3.899 28 C 0.115 3.885 29 H 0.081 0.919 30 O -0.562 6.562 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.273 0.727 35 H 0.214 0.786 36 H 0.172 0.828 37 H 0.409 0.591 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.031 0.969 42 H 0.263 0.737 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.996 10.423 14.983 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.173 5.173 3 C 0.005 3.995 4 N -0.244 5.244 5 C -0.100 4.100 6 C -0.024 4.024 7 N -0.184 5.184 8 C -0.034 4.034 9 C -0.160 4.160 10 C -0.081 4.081 11 C 0.340 3.660 12 O -0.425 6.425 13 N -0.367 5.367 14 C 0.020 3.980 15 C -0.111 4.111 16 H 0.124 0.876 17 C -0.003 4.003 18 N -0.352 5.352 19 C -0.369 4.369 20 H 0.079 0.921 21 C -0.236 4.236 22 N -0.601 5.601 23 Si 0.777 3.223 24 H -0.187 1.187 25 H -0.237 1.237 26 H -0.190 1.190 27 C -0.024 4.024 28 C 0.054 3.946 29 H 0.099 0.901 30 O -0.370 6.370 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.103 0.897 34 H 0.288 0.712 35 H 0.231 0.769 36 H 0.189 0.811 37 H 0.246 0.754 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.765 11.327 14.924 27.968 hybrid contribution 0.387 -1.141 -0.516 1.311 sum -20.378 10.186 14.408 26.956 Atomic orbital electron populations 1.22378 0.72307 1.06470 1.05166 1.45484 1.09293 1.03416 1.59137 1.26687 0.83618 0.94926 0.94226 1.70297 1.20386 1.10919 1.22749 1.19521 0.93061 0.91946 1.05431 1.19228 0.89007 0.88957 1.05199 1.66297 1.38655 0.99318 1.14134 1.23211 0.86281 1.00039 0.93835 1.22566 1.00383 0.93690 0.99348 1.19739 0.91476 0.93617 1.03234 1.18253 0.85197 0.85798 0.76764 1.90801 1.85016 1.17118 1.49581 1.45846 1.05906 1.10262 1.74658 1.21268 0.78713 0.95464 1.02564 1.22295 0.94538 0.96420 0.97826 0.87638 1.21805 0.87969 0.95777 0.94771 1.44741 1.03546 1.63202 1.23744 1.18581 0.95584 1.23156 0.99539 0.92126 1.25695 1.01911 0.99851 0.96131 1.69994 1.37167 1.44351 1.08556 0.85888 0.80466 0.77497 0.78440 1.18719 1.23737 1.19000 1.22508 0.93780 0.95419 0.90741 1.22629 0.91878 0.96346 0.83704 0.90093 1.86422 1.34386 1.90782 1.25404 0.89134 0.85627 0.89746 0.71151 0.76948 0.81051 0.75353 0.89897 0.92067 0.95652 0.95126 0.92828 0.92590 0.94291 0.74942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 11.20 127.77 1.43 1.92 16 2 N -0.48 -8.14 3.20 -549.31 -1.76 -9.90 16 3 C 0.29 5.04 12.50 180.02 2.25 7.29 16 4 N -0.53 -15.56 10.63 -191.50 -2.04 -17.59 16 5 C 0.02 0.74 6.85 40.01 0.27 1.01 16 6 C 0.21 5.25 8.02 133.93 1.07 6.33 16 7 N -0.47 -10.60 10.35 -192.83 -2.00 -12.60 16 8 C 0.13 2.42 11.14 84.73 0.94 3.37 16 9 C -0.14 -2.89 9.60 22.63 0.22 -2.67 16 10 C -0.07 -1.98 5.93 -19.75 -0.12 -2.10 16 11 C 0.55 18.43 7.79 86.76 0.68 19.10 16 12 O -0.55 -22.36 16.19 -3.89 -0.06 -22.42 16 13 N -0.71 -20.47 5.36 -466.06 -2.50 -22.97 16 14 C 0.14 4.25 4.99 86.38 0.43 4.68 16 15 C -0.09 -2.81 2.75 -9.61 -0.03 -2.84 16 16 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 17 C 0.12 4.87 4.43 86.73 0.38 5.25 16 18 N -0.62 -29.06 3.22 -691.17 -2.23 -31.28 16 19 C -0.24 -13.66 10.58 84.03 0.89 -12.77 16 20 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 21 C -0.04 -2.40 5.43 84.86 0.46 -1.94 16 22 N -0.95 -59.97 13.97 21.65 0.30 -59.67 16 23 Si 0.95 44.86 24.39 68.60 1.67 46.53 16 24 H -0.26 -11.30 6.84 99.48 0.68 -10.62 16 25 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 26 H -0.26 -11.79 6.87 99.48 0.68 -11.11 16 27 C 0.10 3.65 6.99 86.79 0.61 4.26 16 28 C 0.12 3.35 3.88 31.99 0.12 3.48 16 29 H 0.08 2.27 8.05 -2.39 -0.02 2.25 16 30 O -0.56 -13.55 13.47 -148.98 -2.01 -15.56 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.35 16 32 H 0.13 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.27 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.21 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.17 2.61 6.53 -2.91 -0.02 2.60 16 37 H 0.41 9.86 6.47 -92.70 -0.60 9.26 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 1.99 8.06 -2.39 -0.02 1.97 16 40 H 0.03 1.06 3.52 -2.38 -0.01 1.05 16 41 H 0.03 1.33 7.76 -2.39 -0.02 1.32 16 42 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.40 5.93 9.12 -74.06 -0.68 5.25 16 Total: -1.00 -90.51 372.67 -1.25 -91.76 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.27 Total: 19.33 kcal Atomic # 6 Polarization: 24.75 SS G_CDS: 9.62 Total: 34.37 kcal Atomic # 7 Polarization: -143.80 SS G_CDS: -10.21 Total: -154.01 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -2.07 Total: -37.98 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.67 Total: 46.53 kcal Total: -90.51 -1.25 -91.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958399631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.426 kcal (2) G-P(sol) polarization free energy of solvation -90.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds