Wall clock time and date at job start Wed Apr 1 2020 03:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36000 * 126.29212 * 2 1 4 4 N 1.30219 * 110.17637 * 180.02562 * 3 2 1 5 5 C 1.35435 * 109.57815 * 359.97438 * 4 3 2 6 6 C 1.39893 * 133.81047 * 180.02562 * 5 4 3 7 7 C 1.36984 * 118.35775 * 180.02562 * 6 5 4 8 8 C 1.39725 * 119.60226 * 359.97438 * 7 6 5 9 9 C 1.47981 * 119.42906 * 179.97438 * 8 7 6 10 10 O 1.21535 * 120.00234 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99843 * 179.97438 * 9 8 7 12 12 C 1.46492 * 119.99766 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47191 * 180.02562 * 12 11 9 14 14 H 1.08995 * 110.91132 * 308.90411 * 13 12 11 15 15 C 1.54907 * 111.00367 * 72.80172 * 13 12 11 16 16 N 1.47430 * 104.83058 * 155.08461 * 15 13 12 17 17 C 1.36939 * 125.64572 * 155.91145 * 16 15 13 18 18 H 1.07999 * 119.99814 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99813 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99933 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99854 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47179 * 90.00038 * 21 19 17 23 23 H 1.48506 * 109.46836 * 210.00049 * 21 19 17 24 24 H 1.48500 * 109.47068 * 329.99551 * 21 19 17 25 25 C 1.47014 * 108.70471 * 335.87277 * 16 15 13 26 26 C 1.54331 * 107.26998 * 1.05754 * 25 16 15 27 27 H 1.09000 * 110.87198 * 263.75468 * 26 25 16 28 28 O 1.42903 * 110.71518 * 140.55636 * 26 25 16 29 29 N 1.32648 * 121.14521 * 0.25830 * 8 7 6 30 30 C 1.31894 * 121.36231 * 359.47442 * 29 8 7 31 31 H 1.09002 * 109.47576 * 89.96970 * 1 2 3 32 32 H 1.08995 * 109.47477 * 209.97568 * 1 2 3 33 33 H 1.09006 * 109.46948 * 329.97001 * 1 2 3 34 34 H 1.07998 * 124.91257 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.82093 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.20060 * 180.02562 * 7 6 5 37 37 H 0.96998 * 119.99674 * 0.02562 * 11 9 8 38 38 H 1.09006 * 109.47186 * 60.00181 * 12 11 9 39 39 H 1.09007 * 109.47518 * 300.00316 * 12 11 9 40 40 H 1.08997 * 110.36868 * 273.92606 * 15 13 12 41 41 H 1.09001 * 110.36760 * 36.25145 * 15 13 12 42 42 H 0.97001 * 120.00199 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.88743 * 241.64099 * 25 16 15 44 44 H 1.08997 * 109.88268 * 120.47140 * 25 16 15 45 45 H 0.96700 * 114.00311 * 66.48015 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2699 1.0962 0.0000 4 7 3.5209 0.7347 -0.0005 5 6 3.6027 -0.6172 -0.0004 6 6 4.6689 -1.5229 -0.0003 7 6 4.3843 -2.8628 -0.0006 8 6 3.0526 -3.2856 -0.0005 9 6 2.7495 -4.7340 -0.0014 10 8 3.6553 -5.5444 -0.0019 11 7 1.4690 -5.1546 -0.0008 12 6 1.1690 -6.5885 -0.0012 13 6 -0.3474 -6.7923 -0.0010 14 1 -0.8180 -6.2106 0.7916 15 6 -0.9549 -6.4421 -1.3822 16 7 -2.2041 -7.2218 -1.4537 17 6 -3.2912 -6.9179 -2.2290 18 1 -3.2773 -6.0404 -2.8583 19 6 -4.4114 -7.7373 -2.2052 20 7 -4.4285 -8.8065 -1.4379 21 14 -5.8947 -7.3225 -3.2622 22 1 -5.7539 -7.9728 -4.5897 23 1 -7.1287 -7.8143 -2.5984 24 1 -5.9807 -5.8505 -3.4386 25 6 -2.0890 -8.3800 -0.5556 26 6 -0.7063 -8.2965 0.1249 27 1 0.0232 -8.9124 -0.4010 28 8 -0.7946 -8.6821 1.4981 29 7 2.0552 -2.4111 -0.0052 30 6 2.2814 -1.1118 0.0002 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3634 -0.8901 0.5134 33 1 -0.3633 0.8898 0.5143 34 1 1.9220 2.1186 0.0004 35 1 5.6911 -1.1743 0.0000 36 1 5.1845 -3.5882 -0.0002 37 1 0.7461 -4.5078 -0.0001 38 1 1.5981 -7.0497 0.8884 39 1 1.5970 -7.0491 -0.8916 40 1 -1.1696 -5.3752 -1.4428 41 1 -0.2760 -6.7392 -2.1816 42 1 -5.2111 -9.3793 -1.4215 43 1 -2.1643 -9.3034 -1.1298 44 1 -2.8757 -8.3444 0.1979 45 1 -1.0168 -9.6137 1.6315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958403435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:50 Heat of formation + Delta-G solvation = 39.994834 kcal Electronic energy + Delta-G solvation = -29519.621103 eV Core-core repulsion = 25346.279764 eV Total energy + Delta-G solvation = -4173.341339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.72478 -40.07528 -38.50917 -37.86420 -35.20504 -34.94747 -34.64251 -32.45382 -32.05923 -30.57744 -29.47446 -27.59971 -27.54217 -25.86875 -24.89931 -23.70938 -22.95889 -21.23419 -20.98090 -20.27546 -19.96294 -18.31690 -18.09297 -17.38110 -16.93588 -16.67550 -16.53841 -15.78502 -15.40934 -15.21948 -14.95792 -14.84207 -14.30185 -14.11288 -13.86277 -13.77536 -13.51474 -13.27357 -13.17870 -12.97774 -12.66660 -12.53381 -12.43834 -12.01367 -11.49525 -11.37330 -11.24567 -11.19268 -10.96945 -10.84381 -10.61807 -10.38265 -10.07025 -9.85632 -9.84073 -9.54814 -9.22357 -9.10953 -9.05028 -8.79472 -8.68308 -6.92263 -5.78082 -3.12484 0.13508 0.90511 1.89820 2.16678 2.80333 3.06267 3.35592 3.40314 3.42474 3.60907 3.65085 3.84586 4.16555 4.39930 4.42871 4.60604 4.67471 4.74512 4.78636 4.90016 5.02733 5.13459 5.18749 5.21297 5.43246 5.49115 5.52737 5.66275 5.72341 5.79627 5.85048 6.00919 6.03042 6.19536 6.21029 6.33513 6.42402 6.46508 6.55374 6.81527 7.25242 7.27778 7.37646 7.47215 7.59425 7.72353 8.15244 8.16882 8.18807 9.13606 9.74136 10.38622 11.33542 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.002637 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.088297 B =10616.575813 C =12457.953321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.482 5.482 3 C 0.282 3.718 4 N -0.493 5.493 5 C 0.022 3.978 6 C -0.028 4.028 7 C -0.125 4.125 8 C 0.122 3.878 9 C 0.572 3.428 10 O -0.533 6.533 11 N -0.701 5.701 12 C 0.131 3.869 13 C -0.107 4.107 14 H 0.090 0.910 15 C 0.142 3.858 16 N -0.603 5.603 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.152 3.848 26 C 0.083 3.917 27 H 0.057 0.943 28 O -0.567 6.567 29 N -0.450 5.450 30 C 0.234 3.766 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.224 0.776 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.411 0.589 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.024 0.976 42 H 0.253 0.747 43 H 0.045 0.955 44 H 0.058 0.942 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.565 16.616 4.971 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.175 5.175 3 C -0.004 4.004 4 N -0.212 5.212 5 C -0.100 4.100 6 C -0.055 4.055 7 C -0.149 4.149 8 C -0.027 4.027 9 C 0.356 3.644 10 O -0.409 6.409 11 N -0.352 5.352 12 C 0.007 3.993 13 C -0.127 4.127 14 H 0.108 0.892 15 C 0.015 3.985 16 N -0.330 5.330 17 C -0.358 4.358 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.027 3.973 26 C 0.023 3.977 27 H 0.075 0.925 28 O -0.371 6.371 29 N -0.165 5.165 30 C -0.003 4.003 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.240 0.760 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.247 0.753 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 13.762 16.806 5.012 22.292 hybrid contribution -1.471 -0.201 -0.705 1.643 sum 12.291 16.605 4.307 21.103 Atomic orbital electron populations 1.22129 0.74654 1.05325 1.04299 1.45110 1.08048 1.04397 1.59903 1.25538 0.84918 0.93224 0.96758 1.70457 1.18204 1.10480 1.22049 1.19869 0.93302 0.91508 1.05312 1.20454 0.98477 0.90647 0.95919 1.21568 0.97148 0.96087 1.00061 1.20950 0.89260 0.92670 0.99776 1.17683 0.83405 0.86039 0.77300 1.90798 1.45703 1.53907 1.50495 1.45906 1.07418 1.09257 1.72610 1.21475 0.95453 0.79816 1.02530 1.22601 0.92967 0.96898 1.00234 0.89215 1.21624 0.88801 0.95769 0.92288 1.44311 1.12632 1.26036 1.49994 1.19062 0.91368 1.07742 1.17629 0.90302 1.24814 0.98349 0.97371 0.99870 1.69939 1.29456 1.15844 1.41731 0.86095 0.82231 0.77651 0.79623 1.21553 1.21634 1.20683 1.21821 0.91086 0.91168 0.93231 1.23127 0.98915 0.93607 0.82079 0.92464 1.86422 1.93597 1.31718 1.25409 1.66159 1.36856 0.99963 1.13542 1.18834 0.89284 0.87606 1.04558 0.90088 0.88785 0.89004 0.75985 0.83326 0.82419 0.75293 0.90826 0.90996 0.93914 0.95870 0.93672 0.93640 0.92410 0.77715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.19 59.84 0.67 1.08 16 2 N -0.48 -4.12 3.20 -124.97 -0.40 -4.52 16 3 C 0.28 2.03 12.49 -89.73 -1.12 0.91 16 4 N -0.49 -5.22 11.27 -11.93 -0.13 -5.35 16 5 C 0.02 0.25 7.25 -84.58 -0.61 -0.36 16 6 C -0.03 -0.28 10.16 -39.42 -0.40 -0.68 16 7 C -0.13 -1.37 9.55 -39.48 -0.38 -1.75 16 8 C 0.12 1.59 6.74 -82.97 -0.56 1.03 16 9 C 0.57 8.38 7.80 -12.26 -0.10 8.29 16 10 O -0.53 -8.97 16.29 5.33 0.09 -8.88 16 11 N -0.70 -9.96 5.49 -61.20 -0.34 -10.30 16 12 C 0.13 1.98 5.13 -4.04 -0.02 1.96 16 13 C -0.11 -1.86 2.77 -88.47 -0.25 -2.10 16 14 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 15 C 0.14 2.82 6.65 -2.53 -0.02 2.80 16 16 N -0.60 -15.04 3.39 -170.07 -0.58 -15.61 16 17 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -26.60 10.31 55.49 0.57 -26.03 16 21 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 C 0.15 3.59 5.15 -3.06 -0.02 3.58 16 26 C 0.08 1.53 3.80 -24.90 -0.09 1.44 16 27 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 28 O -0.57 -9.76 13.39 -35.23 -0.47 -10.23 16 29 N -0.45 -5.77 9.54 -8.82 -0.08 -5.86 16 30 C 0.23 2.77 8.01 -155.74 -1.25 1.52 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.22 0.44 8.06 -52.49 -0.42 0.01 16 35 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.16 1.53 7.61 -52.48 -0.40 1.13 16 37 H 0.41 5.54 7.78 -40.82 -0.32 5.22 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.11 7.96 -51.92 -0.41 0.70 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.02 0.47 7.91 -51.93 -0.41 0.06 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 43 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 44 H 0.06 1.54 7.29 -51.93 -0.38 1.16 16 45 H 0.38 5.01 9.12 45.56 0.42 5.43 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -35.82 380.54 -10.26 -46.08 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.24 Total: 7.30 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -4.39 Total: 10.98 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -0.96 Total: -67.66 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.38 Total: -19.12 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.82 -10.26 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958403435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.071 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds