Wall clock time and date at job start Wed Apr 1 2020 03:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36000 * 126.29212 * 2 1 4 4 N 1.30219 * 110.17637 * 180.02562 * 3 2 1 5 5 C 1.35435 * 109.57815 * 359.97438 * 4 3 2 6 6 C 1.39893 * 133.81047 * 180.02562 * 5 4 3 7 7 C 1.36984 * 118.35775 * 180.02562 * 6 5 4 8 8 C 1.39725 * 119.60226 * 359.97438 * 7 6 5 9 9 C 1.47981 * 119.42906 * 179.97438 * 8 7 6 10 10 O 1.21535 * 120.00234 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99843 * 179.97438 * 9 8 7 12 12 C 1.46492 * 119.99766 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47191 * 180.02562 * 12 11 9 14 14 H 1.08995 * 110.91132 * 308.90411 * 13 12 11 15 15 C 1.54907 * 111.00367 * 72.80172 * 13 12 11 16 16 N 1.47430 * 104.83058 * 155.08461 * 15 13 12 17 17 C 1.36939 * 125.64572 * 155.91145 * 16 15 13 18 18 H 1.07999 * 119.99814 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99813 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99933 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99854 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47179 * 90.00038 * 21 19 17 23 23 H 1.48506 * 109.46836 * 210.00049 * 21 19 17 24 24 H 1.48500 * 109.47068 * 329.99551 * 21 19 17 25 25 C 1.47014 * 108.70471 * 335.87277 * 16 15 13 26 26 C 1.54331 * 107.26998 * 1.05754 * 25 16 15 27 27 H 1.09000 * 110.87198 * 263.75468 * 26 25 16 28 28 O 1.42903 * 110.71518 * 140.55636 * 26 25 16 29 29 N 1.32648 * 121.14521 * 0.25830 * 8 7 6 30 30 C 1.31894 * 121.36231 * 359.47442 * 29 8 7 31 31 H 1.09002 * 109.47576 * 89.96970 * 1 2 3 32 32 H 1.08995 * 109.47477 * 209.97568 * 1 2 3 33 33 H 1.09006 * 109.46948 * 329.97001 * 1 2 3 34 34 H 1.07998 * 124.91257 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.82093 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.20060 * 180.02562 * 7 6 5 37 37 H 0.96998 * 119.99674 * 0.02562 * 11 9 8 38 38 H 1.09006 * 109.47186 * 60.00181 * 12 11 9 39 39 H 1.09007 * 109.47518 * 300.00316 * 12 11 9 40 40 H 1.08997 * 110.36868 * 273.92606 * 15 13 12 41 41 H 1.09001 * 110.36760 * 36.25145 * 15 13 12 42 42 H 0.97001 * 120.00199 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.88743 * 241.64099 * 25 16 15 44 44 H 1.08997 * 109.88268 * 120.47140 * 25 16 15 45 45 H 0.96700 * 114.00311 * 66.48015 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2699 1.0962 0.0000 4 7 3.5209 0.7347 -0.0005 5 6 3.6027 -0.6172 -0.0004 6 6 4.6689 -1.5229 -0.0003 7 6 4.3843 -2.8628 -0.0006 8 6 3.0526 -3.2856 -0.0005 9 6 2.7495 -4.7340 -0.0014 10 8 3.6553 -5.5444 -0.0019 11 7 1.4690 -5.1546 -0.0008 12 6 1.1690 -6.5885 -0.0012 13 6 -0.3474 -6.7923 -0.0010 14 1 -0.8180 -6.2106 0.7916 15 6 -0.9549 -6.4421 -1.3822 16 7 -2.2041 -7.2218 -1.4537 17 6 -3.2912 -6.9179 -2.2290 18 1 -3.2773 -6.0404 -2.8583 19 6 -4.4114 -7.7373 -2.2052 20 7 -4.4285 -8.8065 -1.4379 21 14 -5.8947 -7.3225 -3.2622 22 1 -5.7539 -7.9728 -4.5897 23 1 -7.1287 -7.8143 -2.5984 24 1 -5.9807 -5.8505 -3.4386 25 6 -2.0890 -8.3800 -0.5556 26 6 -0.7063 -8.2965 0.1249 27 1 0.0232 -8.9124 -0.4010 28 8 -0.7946 -8.6821 1.4981 29 7 2.0552 -2.4111 -0.0052 30 6 2.2814 -1.1118 0.0002 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3634 -0.8901 0.5134 33 1 -0.3633 0.8898 0.5143 34 1 1.9220 2.1186 0.0004 35 1 5.6911 -1.1743 0.0000 36 1 5.1845 -3.5882 -0.0002 37 1 0.7461 -4.5078 -0.0001 38 1 1.5981 -7.0497 0.8884 39 1 1.5970 -7.0491 -0.8916 40 1 -1.1696 -5.3752 -1.4428 41 1 -0.2760 -6.7392 -2.1816 42 1 -5.2111 -9.3793 -1.4215 43 1 -2.1643 -9.3034 -1.1298 44 1 -2.8757 -8.3444 0.1979 45 1 -1.0168 -9.6137 1.6315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958403435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:49 Heat of formation + Delta-G solvation = 13.586805 kcal Electronic energy + Delta-G solvation = -29520.766241 eV Core-core repulsion = 25346.279764 eV Total energy + Delta-G solvation = -4174.486477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.44186 -41.16236 -39.92518 -38.92107 -36.65471 -36.19196 -35.57134 -34.07270 -33.00083 -31.79549 -30.81775 -29.29535 -28.08068 -27.38113 -26.12586 -24.93483 -23.98511 -22.37919 -21.91477 -21.79217 -21.38259 -19.35759 -18.97396 -18.74232 -18.26469 -18.01426 -17.26518 -17.14443 -16.76677 -16.44497 -16.05098 -15.84278 -15.65146 -15.52508 -14.95019 -14.84815 -14.42656 -14.37355 -14.31903 -14.06126 -13.91443 -13.73596 -13.48923 -13.30665 -13.22049 -13.11595 -12.72771 -12.45251 -12.30775 -12.17002 -11.93994 -11.88245 -11.80140 -11.59936 -11.29950 -10.83432 -10.74285 -10.40437 -10.21131 -9.83330 -9.63460 -8.94905 -7.87362 -5.24031 -0.68748 0.09700 1.26738 1.36292 1.45562 1.47433 1.55913 1.91489 1.97651 2.47031 2.74864 2.82994 3.19660 3.23726 3.33451 3.47369 3.55921 3.64904 3.77655 3.87931 3.89089 4.11276 4.13837 4.21751 4.39952 4.42151 4.44140 4.47719 4.59840 4.72078 4.74992 4.80344 4.85890 4.92679 4.96277 5.10700 5.21304 5.33567 5.40517 5.43059 5.48156 5.70125 5.86226 6.15262 6.29617 6.58841 6.60031 6.89393 7.03141 7.06125 7.72555 8.36179 9.22747 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.002637 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.088297 B =10616.575813 C =12457.953321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.484 5.484 3 C 0.304 3.696 4 N -0.526 5.526 5 C 0.012 3.988 6 C -0.028 4.028 7 C -0.123 4.123 8 C 0.097 3.903 9 C 0.575 3.425 10 O -0.559 6.559 11 N -0.699 5.699 12 C 0.144 3.856 13 C -0.089 4.089 14 H 0.084 0.916 15 C 0.140 3.860 16 N -0.625 5.625 17 C -0.244 4.244 18 H 0.085 0.915 19 C -0.066 4.066 20 N -0.951 5.951 21 Si 0.980 3.020 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.161 3.839 26 C 0.098 3.902 27 H 0.079 0.921 28 O -0.569 6.569 29 N -0.460 5.460 30 C 0.208 3.792 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.276 0.724 35 H 0.174 0.826 36 H 0.167 0.833 37 H 0.415 0.585 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.030 0.970 42 H 0.247 0.753 43 H 0.014 0.986 44 H 0.020 0.980 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.143 19.279 4.873 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.175 5.175 3 C 0.019 3.981 4 N -0.246 5.246 5 C -0.110 4.110 6 C -0.055 4.055 7 C -0.147 4.147 8 C -0.050 4.050 9 C 0.360 3.640 10 O -0.437 6.437 11 N -0.349 5.349 12 C 0.020 3.980 13 C -0.109 4.109 14 H 0.102 0.898 15 C 0.015 3.985 16 N -0.352 5.352 17 C -0.372 4.372 18 H 0.103 0.897 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.191 1.191 25 C 0.036 3.964 26 C 0.037 3.963 27 H 0.096 0.904 28 O -0.377 6.377 29 N -0.175 5.175 30 C -0.030 4.030 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.291 0.709 35 H 0.191 0.809 36 H 0.184 0.816 37 H 0.251 0.749 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.038 0.962 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 14.340 19.485 4.918 24.688 hybrid contribution -1.676 -0.887 -0.661 2.008 sum 12.664 18.598 4.258 22.900 Atomic orbital electron populations 1.22362 0.72880 1.06472 1.05004 1.45442 1.09144 1.03651 1.59276 1.26647 0.83860 0.94637 0.92939 1.70488 1.20131 1.09734 1.24226 1.20240 0.93643 0.92383 1.04755 1.20731 0.99549 0.90097 0.95164 1.21658 0.96539 0.96760 0.99720 1.20752 0.90229 0.91780 1.02276 1.17899 0.82949 0.86754 0.76406 1.90773 1.46286 1.54827 1.51808 1.45832 1.07649 1.08842 1.72610 1.21253 0.93412 0.80570 1.02759 1.22394 0.94292 0.95874 0.98351 0.89785 1.21764 0.87135 0.95646 0.93917 1.44612 1.13675 1.27065 1.49830 1.19476 0.92283 1.07773 1.17698 0.89671 1.25670 1.01219 0.97539 1.01464 1.70159 1.29781 1.16792 1.43267 0.85062 0.78420 0.78054 0.77693 1.21340 1.22154 1.19142 1.21595 0.93155 0.89721 0.91966 1.22887 0.96052 0.94871 0.82459 0.90364 1.86391 1.93428 1.33555 1.24284 1.66055 1.37044 1.00664 1.13786 1.19192 0.90505 0.87899 1.05442 0.89580 0.90364 0.85174 0.70860 0.80864 0.81559 0.74875 0.90535 0.90818 0.93079 0.95180 0.94351 0.96766 0.96194 0.75691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 11.19 127.77 1.43 2.03 16 2 N -0.48 -7.16 3.20 -549.31 -1.76 -8.92 16 3 C 0.30 3.40 12.49 180.04 2.25 5.65 16 4 N -0.53 -10.00 11.27 -191.65 -2.16 -12.16 16 5 C 0.01 0.26 7.25 39.69 0.29 0.55 16 6 C -0.03 -0.54 10.16 22.38 0.23 -0.32 16 7 C -0.12 -2.65 9.55 22.33 0.21 -2.44 16 8 C 0.10 2.53 6.74 41.96 0.28 2.81 16 9 C 0.57 16.73 7.80 86.83 0.68 17.41 16 10 O -0.56 -18.68 16.29 -3.83 -0.06 -18.75 16 11 N -0.70 -19.46 5.49 -465.83 -2.56 -22.01 16 12 C 0.14 4.20 5.13 86.38 0.44 4.65 16 13 C -0.09 -3.03 2.77 -9.40 -0.03 -3.06 16 14 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 15 C 0.14 5.53 6.65 86.85 0.58 6.11 16 16 N -0.62 -31.59 3.39 -691.99 -2.35 -33.93 16 17 C -0.24 -13.44 10.28 84.03 0.86 -12.58 16 18 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 20 N -0.95 -56.56 10.31 21.65 0.22 -56.34 16 21 Si 0.98 45.06 29.55 68.60 2.03 47.09 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 C 0.16 7.83 5.15 86.73 0.45 8.28 16 26 C 0.10 3.56 3.80 31.78 0.12 3.68 16 27 H 0.08 2.58 8.04 -2.39 -0.02 2.56 16 28 O -0.57 -19.11 13.39 -148.98 -1.99 -21.10 16 29 N -0.46 -11.68 9.54 -181.83 -1.74 -13.41 16 30 C 0.21 4.71 8.01 134.06 1.07 5.79 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.13 0.06 8.14 -2.38 -0.02 0.04 16 34 H 0.28 -0.34 8.06 -2.91 -0.02 -0.36 16 35 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.17 3.16 7.61 -2.91 -0.02 3.14 16 37 H 0.41 10.99 7.78 -92.71 -0.72 10.26 16 38 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.07 2.17 7.96 -2.38 -0.02 2.15 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.03 1.17 7.91 -2.39 -0.02 1.15 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.01 0.76 7.51 -2.39 -0.02 0.75 16 44 H 0.02 1.10 7.29 -2.39 -0.02 1.09 16 45 H 0.39 10.15 9.12 -74.06 -0.68 9.47 16 Total: -1.00 -79.80 380.54 -1.38 -81.18 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -0.35 Total: 23.05 kcal Atomic # 6 Polarization: 25.99 SS G_CDS: 9.33 Total: 35.32 kcal Atomic # 7 Polarization: -136.44 SS G_CDS: -10.34 Total: -146.78 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -2.06 Total: -39.85 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -79.80 -1.38 -81.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958403435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.764 kcal (2) G-P(sol) polarization free energy of solvation -79.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds