Wall clock time and date at job start Wed Apr 1 2020 03:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35993 * 126.29367 * 2 1 4 4 N 1.30223 * 110.18237 * 180.02562 * 3 2 1 5 5 C 1.35436 * 109.57176 * 359.97438 * 4 3 2 6 6 C 1.39899 * 133.80529 * 180.02562 * 5 4 3 7 7 C 1.36986 * 118.35559 * 180.27801 * 6 5 4 8 8 C 1.39731 * 119.59777 * 359.41698 * 7 6 5 9 9 C 1.47975 * 119.42606 * 180.30215 * 8 7 6 10 10 O 1.21544 * 120.00221 * 0.30748 * 9 8 7 11 11 N 1.34782 * 120.00251 * 180.30940 * 9 8 7 12 12 C 1.46501 * 120.00425 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47137 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.64272 * 54.29989 * 13 12 11 15 15 C 1.54319 * 110.72379 * 291.15951 * 13 12 11 16 16 N 1.47019 * 107.27412 * 219.44616 * 15 13 12 17 17 C 1.36936 * 125.65137 * 178.97561 * 16 15 13 18 18 H 1.08005 * 119.99776 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00064 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00335 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47387 * 89.99977 * 21 19 17 23 23 H 1.48506 * 109.47340 * 210.00329 * 21 19 17 24 24 H 1.48499 * 109.47133 * 329.99973 * 21 19 17 25 25 C 1.47427 * 108.70236 * 358.93681 * 16 15 13 26 26 C 1.55128 * 104.94137 * 24.00375 * 25 16 15 27 27 H 1.08996 * 111.15848 * 205.13257 * 26 25 16 28 28 O 1.42899 * 110.93211 * 81.21577 * 26 25 16 29 29 N 1.32647 * 121.14530 * 0.61406 * 8 7 6 30 30 C 1.31880 * 121.36591 * 359.68886 * 29 8 7 31 31 H 1.09005 * 109.46839 * 89.98145 * 1 2 3 32 32 H 1.09000 * 109.47405 * 209.97446 * 1 2 3 33 33 H 1.09002 * 109.47329 * 329.98320 * 1 2 3 34 34 H 1.08003 * 124.91121 * 0.07554 * 3 2 1 35 35 H 1.08002 * 120.82005 * 359.97438 * 6 5 4 36 36 H 1.08000 * 120.20171 * 179.72059 * 7 6 5 37 37 H 0.97006 * 119.99309 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.46655 * 300.00200 * 12 11 9 39 39 H 1.08996 * 109.46729 * 59.99679 * 12 11 9 40 40 H 1.09005 * 109.88127 * 338.86052 * 15 13 12 41 41 H 1.08998 * 109.88709 * 100.02143 * 15 13 12 42 42 H 0.97002 * 120.00298 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.36503 * 142.96967 * 25 16 15 44 44 H 1.09002 * 110.36720 * 265.18439 * 25 16 15 45 45 H 0.96704 * 114.00010 * 67.96293 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2699 1.0961 0.0000 4 7 3.5210 0.7347 -0.0005 5 6 3.6027 -0.6172 -0.0004 6 6 4.6690 -1.5229 -0.0003 7 6 4.3844 -2.8628 -0.0059 8 6 3.0526 -3.2856 0.0008 9 6 2.7496 -4.7340 0.0014 10 8 3.6555 -5.5444 0.0018 11 7 1.4692 -5.1546 0.0016 12 6 1.1691 -6.5886 0.0017 13 6 -0.3472 -6.7924 0.0025 14 1 -0.8078 -6.2536 -0.8256 15 6 -0.9571 -6.3488 1.3489 16 7 -2.0053 -7.3201 1.6944 17 6 -2.7747 -7.2949 2.8269 18 1 -2.6341 -6.5125 3.5580 19 6 -3.7354 -8.2750 3.0352 20 7 -3.9071 -9.2282 2.1440 21 14 -4.7845 -8.2411 4.5804 22 1 -6.0110 -7.4429 4.3286 23 1 -5.1639 -9.6280 4.9517 24 1 -4.0124 -7.6255 5.6895 25 6 -2.0916 -8.3251 0.6192 26 6 -0.6982 -8.3023 -0.0622 27 1 -0.7597 -8.6452 -1.0950 28 8 0.2450 -9.0796 0.6782 29 7 2.0552 -2.4111 0.0004 30 6 2.2815 -1.1118 -0.0002 31 1 -0.3633 0.0003 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5141 34 1 1.9219 2.1185 0.0012 35 1 5.6912 -1.1742 -0.0008 36 1 5.1846 -3.5881 -0.0106 37 1 0.7462 -4.5078 0.0009 38 1 1.5976 -7.0494 -0.8883 39 1 1.5978 -7.0494 0.8916 40 1 -0.1874 -6.3439 2.1208 41 1 -1.3915 -5.3541 1.2494 42 1 -4.5782 -9.9133 2.2898 43 1 -2.2945 -9.3111 1.0371 44 1 -2.8668 -8.0499 -0.0960 45 1 0.0667 -10.0300 0.6667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958403437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:56 Heat of formation + Delta-G solvation = 43.748369 kcal Electronic energy + Delta-G solvation = -29651.457104 eV Core-core repulsion = 25478.278531 eV Total energy + Delta-G solvation = -4173.178573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.71788 -40.03874 -38.51186 -37.83402 -35.03214 -34.81827 -34.51340 -32.41496 -32.01612 -30.54611 -29.44835 -27.71334 -27.54998 -25.81703 -24.89662 -23.71447 -22.95659 -21.22884 -20.97680 -20.20730 -19.67740 -18.27035 -18.07156 -17.35193 -17.28882 -16.53886 -16.35899 -15.68210 -15.22812 -15.12283 -14.92018 -14.82474 -14.29030 -14.09377 -13.85717 -13.78030 -13.56466 -13.32505 -13.14892 -12.97048 -12.72472 -12.52426 -12.28268 -11.93063 -11.39273 -11.35137 -11.24874 -11.18830 -10.82513 -10.65205 -10.42537 -10.34047 -10.08063 -9.93793 -9.83099 -9.51599 -9.10373 -9.09824 -8.99923 -8.76133 -8.68504 -6.84624 -5.69670 -3.09461 0.14868 0.91751 1.89892 2.17973 2.83176 3.11688 3.37640 3.43034 3.44997 3.62431 3.67361 3.85207 4.17011 4.42121 4.46235 4.61727 4.69658 4.75974 4.76816 4.91360 5.11810 5.15632 5.22327 5.32639 5.41144 5.51190 5.53783 5.61507 5.74092 5.80410 5.91505 6.06547 6.12247 6.20804 6.34958 6.43747 6.45747 6.52119 6.65970 6.86792 7.27096 7.28141 7.28529 7.57068 7.63597 7.75080 8.20368 8.24122 8.37706 9.18175 9.79551 10.43758 11.35283 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002567 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.112660 B =10905.045999 C =12431.401818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.483 5.483 3 C 0.281 3.719 4 N -0.493 5.493 5 C 0.021 3.979 6 C -0.027 4.027 7 C -0.125 4.125 8 C 0.124 3.876 9 C 0.570 3.430 10 O -0.531 6.531 11 N -0.704 5.704 12 C 0.138 3.862 13 C -0.106 4.106 14 H 0.085 0.915 15 C 0.145 3.855 16 N -0.598 5.598 17 C -0.217 4.217 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.926 5.926 21 Si 0.915 3.085 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.082 3.918 27 H 0.055 0.945 28 O -0.557 6.557 29 N -0.450 5.450 30 C 0.234 3.766 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.224 0.776 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.409 0.591 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.028 0.972 41 H 0.019 0.981 42 H 0.252 0.748 43 H 0.112 0.888 44 H 0.018 0.982 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.156 17.738 -8.481 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.175 5.175 3 C -0.005 4.005 4 N -0.212 5.212 5 C -0.101 4.101 6 C -0.055 4.055 7 C -0.149 4.149 8 C -0.025 4.025 9 C 0.354 3.646 10 O -0.407 6.407 11 N -0.355 5.355 12 C 0.015 3.985 13 C -0.125 4.125 14 H 0.104 0.896 15 C 0.019 3.981 16 N -0.323 5.323 17 C -0.346 4.346 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.575 5.575 21 Si 0.746 3.254 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.001 3.999 26 C 0.021 3.979 27 H 0.073 0.927 28 O -0.362 6.362 29 N -0.166 5.166 30 C -0.003 4.003 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.240 0.760 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.245 0.755 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.129 0.871 44 H 0.036 0.964 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 11.519 17.865 -8.251 22.801 hybrid contribution -1.399 -0.184 0.626 1.544 sum 10.119 17.681 -7.625 21.752 Atomic orbital electron populations 1.22120 0.74731 1.05439 1.04090 1.45097 1.08008 1.04405 1.60000 1.25531 0.84930 0.93210 0.96837 1.70457 1.18196 1.10497 1.22010 1.19867 0.93314 0.91494 1.05382 1.20459 0.98474 0.90651 0.95904 1.21580 0.97190 0.96085 1.00020 1.20992 0.89248 0.92742 0.99564 1.17679 0.83496 0.85965 0.77447 1.90808 1.45682 1.53868 1.50359 1.45995 1.07317 1.09535 1.72620 1.21332 0.95106 0.78929 1.03137 1.22499 0.93923 0.96400 0.99697 0.89641 1.21307 0.91402 0.92732 0.92650 1.44340 1.39635 1.27299 1.21054 1.19083 1.10976 1.08691 0.95824 0.90523 1.24756 0.99626 0.97659 0.98717 1.69744 1.36729 1.16156 1.34878 0.86055 0.80179 0.76849 0.82331 1.21701 1.21633 1.20702 1.22618 0.89666 0.98138 0.89430 1.23245 0.91800 0.89382 0.93441 0.92696 1.86395 1.52193 1.21862 1.75799 1.66156 1.36878 0.99935 1.13646 1.18834 0.89274 0.87616 1.04549 0.90259 0.88737 0.88987 0.76004 0.83331 0.82402 0.75546 0.91436 0.89844 0.95365 0.96341 0.93754 0.87060 0.96378 0.77811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.19 59.84 0.67 1.07 16 2 N -0.48 -4.10 3.20 -124.97 -0.40 -4.50 16 3 C 0.28 2.03 12.49 -89.73 -1.12 0.91 16 4 N -0.49 -5.24 11.27 -11.93 -0.13 -5.38 16 5 C 0.02 0.25 7.25 -84.58 -0.61 -0.37 16 6 C -0.03 -0.28 10.16 -39.41 -0.40 -0.68 16 7 C -0.13 -1.41 9.55 -39.48 -0.38 -1.79 16 8 C 0.12 1.64 6.74 -82.97 -0.56 1.09 16 9 C 0.57 8.67 7.80 -12.27 -0.10 8.57 16 10 O -0.53 -9.36 16.29 5.33 0.09 -9.27 16 11 N -0.70 -10.31 5.42 -61.21 -0.33 -10.64 16 12 C 0.14 2.22 4.54 -4.04 -0.02 2.20 16 13 C -0.11 -1.81 2.91 -88.79 -0.26 -2.07 16 14 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 15 C 0.15 3.02 6.64 -3.07 -0.02 3.00 16 16 N -0.60 -15.16 3.40 -169.94 -0.58 -15.73 16 17 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16 18 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 20 N -0.93 -26.49 10.09 55.49 0.56 -25.93 16 21 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.13 2.96 5.62 -2.41 -0.01 2.95 16 26 C 0.08 1.50 4.19 -24.47 -0.10 1.40 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 O -0.56 -10.26 12.27 -35.23 -0.43 -10.69 16 29 N -0.45 -5.83 9.54 -8.82 -0.08 -5.92 16 30 C 0.23 2.78 8.01 -155.74 -1.25 1.54 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.22 0.43 8.06 -52.48 -0.42 0.01 16 35 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.16 1.59 7.61 -52.49 -0.40 1.19 16 37 H 0.41 5.55 7.71 -40.82 -0.31 5.23 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.55 7.49 -51.93 -0.39 1.16 16 40 H 0.03 0.63 7.73 -51.93 -0.40 0.22 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.38 5.62 9.12 45.56 0.42 6.03 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -36.07 378.12 -10.21 -46.28 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.17 Total: 7.95 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: -4.41 Total: 11.15 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.97 Total: -68.10 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.35 Total: -19.96 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.07 -10.21 -46.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958403437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.030 kcal (2) G-P(sol) polarization free energy of solvation -36.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds