Wall clock time and date at job start Wed Apr 1 2020 03:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35993 * 126.29367 * 2 1 4 4 N 1.30223 * 110.18237 * 180.02562 * 3 2 1 5 5 C 1.35436 * 109.57176 * 359.97438 * 4 3 2 6 6 C 1.39899 * 133.80529 * 180.02562 * 5 4 3 7 7 C 1.36986 * 118.35559 * 180.27801 * 6 5 4 8 8 C 1.39731 * 119.59777 * 359.41698 * 7 6 5 9 9 C 1.47975 * 119.42606 * 180.30215 * 8 7 6 10 10 O 1.21544 * 120.00221 * 0.30748 * 9 8 7 11 11 N 1.34782 * 120.00251 * 180.30940 * 9 8 7 12 12 C 1.46501 * 120.00425 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47137 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.64272 * 54.29989 * 13 12 11 15 15 C 1.54319 * 110.72379 * 291.15951 * 13 12 11 16 16 N 1.47019 * 107.27412 * 219.44616 * 15 13 12 17 17 C 1.36936 * 125.65137 * 178.97561 * 16 15 13 18 18 H 1.08005 * 119.99776 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00064 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00335 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47387 * 89.99977 * 21 19 17 23 23 H 1.48506 * 109.47340 * 210.00329 * 21 19 17 24 24 H 1.48499 * 109.47133 * 329.99973 * 21 19 17 25 25 C 1.47427 * 108.70236 * 358.93681 * 16 15 13 26 26 C 1.55128 * 104.94137 * 24.00375 * 25 16 15 27 27 H 1.08996 * 111.15848 * 205.13257 * 26 25 16 28 28 O 1.42899 * 110.93211 * 81.21577 * 26 25 16 29 29 N 1.32647 * 121.14530 * 0.61406 * 8 7 6 30 30 C 1.31880 * 121.36591 * 359.68886 * 29 8 7 31 31 H 1.09005 * 109.46839 * 89.98145 * 1 2 3 32 32 H 1.09000 * 109.47405 * 209.97446 * 1 2 3 33 33 H 1.09002 * 109.47329 * 329.98320 * 1 2 3 34 34 H 1.08003 * 124.91121 * 0.07554 * 3 2 1 35 35 H 1.08002 * 120.82005 * 359.97438 * 6 5 4 36 36 H 1.08000 * 120.20171 * 179.72059 * 7 6 5 37 37 H 0.97006 * 119.99309 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.46655 * 300.00200 * 12 11 9 39 39 H 1.08996 * 109.46729 * 59.99679 * 12 11 9 40 40 H 1.09005 * 109.88127 * 338.86052 * 15 13 12 41 41 H 1.08998 * 109.88709 * 100.02143 * 15 13 12 42 42 H 0.97002 * 120.00298 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.36503 * 142.96967 * 25 16 15 44 44 H 1.09002 * 110.36720 * 265.18439 * 25 16 15 45 45 H 0.96704 * 114.00010 * 67.96293 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2699 1.0961 0.0000 4 7 3.5210 0.7347 -0.0005 5 6 3.6027 -0.6172 -0.0004 6 6 4.6690 -1.5229 -0.0003 7 6 4.3844 -2.8628 -0.0059 8 6 3.0526 -3.2856 0.0008 9 6 2.7496 -4.7340 0.0014 10 8 3.6555 -5.5444 0.0018 11 7 1.4692 -5.1546 0.0016 12 6 1.1691 -6.5886 0.0017 13 6 -0.3472 -6.7924 0.0025 14 1 -0.8078 -6.2536 -0.8256 15 6 -0.9571 -6.3488 1.3489 16 7 -2.0053 -7.3201 1.6944 17 6 -2.7747 -7.2949 2.8269 18 1 -2.6341 -6.5125 3.5580 19 6 -3.7354 -8.2750 3.0352 20 7 -3.9071 -9.2282 2.1440 21 14 -4.7845 -8.2411 4.5804 22 1 -6.0110 -7.4429 4.3286 23 1 -5.1639 -9.6280 4.9517 24 1 -4.0124 -7.6255 5.6895 25 6 -2.0916 -8.3251 0.6192 26 6 -0.6982 -8.3023 -0.0622 27 1 -0.7597 -8.6452 -1.0950 28 8 0.2450 -9.0796 0.6782 29 7 2.0552 -2.4111 0.0004 30 6 2.2815 -1.1118 -0.0002 31 1 -0.3633 0.0003 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5141 34 1 1.9219 2.1185 0.0012 35 1 5.6912 -1.1742 -0.0008 36 1 5.1846 -3.5881 -0.0106 37 1 0.7462 -4.5078 0.0009 38 1 1.5976 -7.0494 -0.8883 39 1 1.5978 -7.0494 0.8916 40 1 -0.1874 -6.3439 2.1208 41 1 -1.3915 -5.3541 1.2494 42 1 -4.5782 -9.9133 2.2898 43 1 -2.2945 -9.3111 1.0371 44 1 -2.8668 -8.0499 -0.0960 45 1 0.0667 -10.0300 0.6667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958403437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:55 Heat of formation + Delta-G solvation = 17.165998 kcal Electronic energy + Delta-G solvation = -29652.609802 eV Core-core repulsion = 25478.278531 eV Total energy + Delta-G solvation = -4174.331271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.44622 -41.16524 -39.92876 -38.91756 -36.33920 -36.18303 -35.57293 -34.01024 -33.00381 -31.77308 -30.82718 -29.37969 -28.07995 -27.38019 -26.14830 -24.95337 -23.99834 -22.39826 -21.91136 -21.69752 -21.14157 -19.32032 -19.08572 -18.88806 -18.19405 -17.91747 -17.25054 -16.89860 -16.79373 -16.43218 -15.99843 -15.85313 -15.65836 -15.55245 -15.08556 -14.79324 -14.51967 -14.36048 -14.29867 -14.00321 -13.90340 -13.68326 -13.49409 -13.34079 -13.18217 -13.01853 -12.65793 -12.33477 -12.18678 -12.04385 -11.88804 -11.88148 -11.83743 -11.71005 -11.28619 -10.81545 -10.65788 -10.41096 -10.20022 -9.83784 -9.63717 -8.86500 -7.79426 -5.21772 -0.69474 0.08875 1.26179 1.36187 1.45315 1.46910 1.55583 1.90999 2.00141 2.48105 2.74197 2.83036 3.20092 3.27745 3.35448 3.47769 3.60228 3.71695 3.86944 3.89500 3.95804 4.00267 4.10978 4.21457 4.42732 4.43163 4.46834 4.58878 4.64045 4.74970 4.78983 4.81595 4.88846 4.96336 5.00306 5.09960 5.27220 5.33862 5.39328 5.42289 5.50254 5.77245 5.86118 6.28124 6.30619 6.59091 6.59750 6.97751 7.04962 7.10930 7.77138 8.40178 9.22717 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002567 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.112660 B =10905.045999 C =12431.401818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.483 5.483 3 C 0.305 3.695 4 N -0.526 5.526 5 C 0.012 3.988 6 C -0.028 4.028 7 C -0.124 4.124 8 C 0.098 3.902 9 C 0.572 3.428 10 O -0.561 6.561 11 N -0.700 5.700 12 C 0.153 3.847 13 C -0.091 4.091 14 H 0.112 0.888 15 C 0.144 3.856 16 N -0.620 5.620 17 C -0.238 4.238 18 H 0.075 0.925 19 C -0.064 4.064 20 N -0.947 5.947 21 Si 0.978 3.022 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.274 1.274 25 C 0.127 3.873 26 C 0.094 3.906 27 H 0.092 0.908 28 O -0.569 6.569 29 N -0.459 5.459 30 C 0.209 3.791 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.277 0.723 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.415 0.585 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.011 0.989 41 H 0.028 0.972 42 H 0.248 0.752 43 H 0.080 0.920 44 H 0.002 0.998 45 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.197 20.286 -9.087 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.175 5.175 3 C 0.020 3.980 4 N -0.246 5.246 5 C -0.110 4.110 6 C -0.055 4.055 7 C -0.148 4.148 8 C -0.050 4.050 9 C 0.357 3.643 10 O -0.439 6.439 11 N -0.350 5.350 12 C 0.029 3.971 13 C -0.110 4.110 14 H 0.130 0.870 15 C 0.019 3.981 16 N -0.346 5.346 17 C -0.367 4.367 18 H 0.093 0.907 19 C -0.257 4.257 20 N -0.597 5.597 21 Si 0.807 3.193 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.200 1.200 25 C 0.002 3.998 26 C 0.034 3.966 27 H 0.110 0.890 28 O -0.376 6.376 29 N -0.174 5.174 30 C -0.030 4.030 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.147 0.853 34 H 0.292 0.708 35 H 0.191 0.809 36 H 0.183 0.817 37 H 0.251 0.749 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.019 0.981 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 11.546 20.425 -8.866 25.083 hybrid contribution -1.449 -0.816 0.829 1.859 sum 10.097 19.610 -8.037 23.475 Atomic orbital electron populations 1.22371 0.72818 1.06392 1.05137 1.45441 1.09174 1.03578 1.59303 1.26658 0.83843 0.94650 0.92878 1.70492 1.20179 1.09685 1.24250 1.20234 0.93648 0.92402 1.04743 1.20725 0.99585 0.90052 0.95165 1.21653 0.96547 0.96791 0.99791 1.20736 0.90251 0.91721 1.02289 1.17949 0.83058 0.86788 0.76462 1.90779 1.46395 1.54942 1.51828 1.45895 1.07578 1.09011 1.72534 1.21043 0.93995 0.79712 1.02320 1.22439 0.94457 0.95794 0.98343 0.87010 1.21401 0.90088 0.92427 0.94211 1.44639 1.40147 1.28844 1.20934 1.19399 1.11611 1.08771 0.96888 0.90738 1.25552 1.00970 0.97529 1.01618 1.69984 1.36993 1.16483 1.36226 0.85079 0.78575 0.76551 0.79120 1.21141 1.21834 1.19953 1.22489 0.92427 0.96049 0.88827 1.23142 0.88702 0.90310 0.94475 0.88994 1.86380 1.51905 1.23195 1.76147 1.66042 1.36951 1.00647 1.13800 1.19186 0.90506 0.87891 1.05384 0.89161 0.90516 0.85323 0.70798 0.80875 0.81725 0.74872 0.90357 0.92539 0.97051 0.95424 0.94256 0.90163 0.98053 0.76215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 11.19 127.77 1.43 1.99 16 2 N -0.48 -7.05 3.20 -549.31 -1.76 -8.81 16 3 C 0.31 3.37 12.49 180.04 2.25 5.61 16 4 N -0.53 -10.05 11.27 -191.64 -2.16 -12.21 16 5 C 0.01 0.26 7.25 39.69 0.29 0.55 16 6 C -0.03 -0.56 10.16 22.38 0.23 -0.33 16 7 C -0.12 -2.79 9.55 22.34 0.21 -2.58 16 8 C 0.10 2.62 6.74 41.96 0.28 2.91 16 9 C 0.57 17.58 7.80 86.82 0.68 18.26 16 10 O -0.56 -20.09 16.29 -3.85 -0.06 -20.15 16 11 N -0.70 -20.34 5.42 -465.85 -2.52 -22.86 16 12 C 0.15 4.82 4.54 86.38 0.39 5.21 16 13 C -0.09 -3.02 2.91 -9.61 -0.03 -3.05 16 14 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 15 C 0.14 6.02 6.64 86.73 0.58 6.59 16 16 N -0.62 -31.92 3.40 -691.55 -2.35 -34.27 16 17 C -0.24 -13.45 10.27 84.03 0.86 -12.59 16 18 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 20 N -0.95 -55.31 10.09 21.65 0.22 -55.09 16 21 Si 0.98 45.65 29.55 68.60 2.03 47.67 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 25 C 0.13 6.02 5.62 86.93 0.49 6.51 16 26 C 0.09 3.36 4.19 32.06 0.13 3.49 16 27 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 28 O -0.57 -20.64 12.27 -148.98 -1.83 -22.47 16 29 N -0.46 -11.79 9.54 -181.83 -1.73 -13.53 16 30 C 0.21 4.75 8.01 134.06 1.07 5.82 16 31 H 0.09 0.51 8.14 -2.38 -0.02 0.50 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.28 -0.40 8.06 -2.91 -0.02 -0.43 16 35 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.17 3.34 7.61 -2.91 -0.02 3.32 16 37 H 0.41 11.07 7.71 -92.70 -0.71 10.36 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 2.12 7.49 -2.39 -0.02 2.10 16 40 H 0.01 0.52 7.73 -2.38 -0.02 0.50 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 43 H 0.08 4.32 5.88 -2.39 -0.01 4.30 16 44 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.39 11.47 9.12 -74.05 -0.68 10.79 16 Total: -1.00 -80.78 378.12 -1.17 -81.95 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.34 Total: 24.52 kcal Atomic # 6 Polarization: 25.90 SS G_CDS: 9.33 Total: 35.23 kcal Atomic # 7 Polarization: -136.45 SS G_CDS: -10.31 Total: -146.76 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -1.89 Total: -42.62 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -80.78 -1.17 -81.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958403437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.119 kcal (2) G-P(sol) polarization free energy of solvation -80.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds