Wall clock time and date at job start Wed Apr 1 2020 03:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39800 * 125.34330 * 2 1 4 4 C 1.30205 * 110.13413 * 179.97438 * 3 2 1 5 5 C 1.45975 * 107.58371 * 0.02562 * 4 3 2 6 6 C 1.39657 * 134.11474 * 180.02562 * 5 4 3 7 7 C 1.39514 * 117.94532 * 179.97438 * 6 5 4 8 8 C 1.47684 * 120.40541 * 179.97438 * 7 6 5 9 9 O 1.21566 * 120.00368 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99643 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99895 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46858 * 180.02562 * 11 10 8 13 13 H 1.08996 * 110.64067 * 303.30523 * 12 11 10 14 14 C 1.54320 * 110.72234 * 66.45360 * 12 11 10 15 15 N 1.47029 * 107.27322 * 140.73520 * 14 12 11 16 16 C 1.36933 * 125.64936 * 181.02206 * 15 14 12 17 17 H 1.08003 * 119.99721 * 13.63215 * 16 15 14 18 18 C 1.38816 * 119.99961 * 193.62770 * 16 15 14 19 19 N 1.31616 * 119.99775 * 27.26821 * 18 16 15 20 20 Si 1.86796 * 119.99890 * 207.26642 * 18 16 15 21 21 H 1.48502 * 109.47389 * 60.00434 * 20 18 16 22 22 H 1.48499 * 109.47223 * 300.00034 * 20 18 16 23 23 H 1.48500 * 109.47095 * 180.02562 * 20 18 16 24 24 C 1.47425 * 108.70123 * 1.28326 * 15 14 12 25 25 C 1.55140 * 104.72236 * 335.55406 * 24 15 14 26 26 H 1.08992 * 110.90138 * 155.27569 * 25 24 15 27 27 O 1.42899 * 111.22399 * 279.18013 * 25 24 15 28 28 C 1.40176 * 119.18268 * 0.24662 * 7 6 5 29 29 N 1.31191 * 121.37612 * 359.46877 * 28 7 6 30 30 C 1.32930 * 121.84116 * 0.55001 * 29 28 7 31 31 H 1.09001 * 109.46781 * 270.03662 * 1 2 3 32 32 H 1.08999 * 109.47090 * 30.03037 * 1 2 3 33 33 H 1.08999 * 109.47584 * 150.03802 * 1 2 3 34 34 H 1.07992 * 126.20922 * 180.02562 * 4 3 2 35 35 H 1.07995 * 121.02799 * 0.02562 * 6 5 4 36 36 H 0.96998 * 120.00190 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.47451 * 59.99349 * 11 10 8 38 38 H 1.09004 * 109.46573 * 299.99734 * 11 10 8 39 39 H 1.08996 * 109.88396 * 21.31395 * 14 12 11 40 40 H 1.09003 * 110.01118 * 260.21543 * 14 12 11 41 41 H 0.97006 * 120.00147 * 5.85176 * 19 18 16 42 42 H 1.08995 * 110.36729 * 94.48746 * 24 15 14 43 43 H 1.08999 * 110.36759 * 216.81246 * 24 15 14 44 44 H 0.96705 * 113.99864 * 292.19978 * 27 25 24 45 45 H 1.08003 * 119.31409 * 179.72569 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1404 0.0000 4 6 3.5301 0.7988 0.0005 5 6 3.5906 -0.6597 0.0003 6 6 4.6327 -1.5895 0.0011 7 6 4.3000 -2.9444 0.0011 8 6 5.3588 -3.9740 0.0013 9 8 6.5285 -3.6431 0.0011 10 7 5.0281 -5.2806 0.0018 11 6 6.0783 -6.3020 0.0027 12 6 5.4382 -7.6916 0.0025 13 1 4.7682 -7.8061 0.8545 14 6 4.6868 -7.9465 -1.3212 15 7 4.9283 -9.3472 -1.6975 16 6 4.4514 -9.9648 -2.8228 17 1 4.0336 -9.3760 -3.6260 18 6 4.5051 -11.3477 -2.9311 19 7 4.4881 -12.0938 -1.8470 20 14 4.6013 -12.1495 -4.6155 21 1 5.8271 -11.6872 -5.3146 22 1 3.4056 -11.7734 -5.4118 23 1 4.6470 -13.6256 -4.4591 24 6 5.7637 -9.9782 -0.6596 25 6 6.5238 -8.8003 0.0049 26 1 6.8210 -9.0539 1.0224 27 8 7.6562 -8.4100 -0.7745 28 6 2.9485 -3.3164 -0.0050 29 7 1.9927 -2.4177 -0.0002 30 6 2.2553 -1.1146 -0.0003 31 1 -0.3633 0.0007 1.0277 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3634 -0.8903 -0.5132 34 1 4.3743 1.4722 0.0011 35 1 5.6642 -1.2696 0.0025 36 1 4.0947 -5.5447 0.0024 37 1 6.6968 -6.1866 0.8927 38 1 6.6973 -6.1874 -0.8873 39 1 5.0679 -7.2831 -2.0975 40 1 3.6188 -7.7791 -1.1820 41 1 4.3528 -11.6840 -0.9782 42 1 5.1380 -10.4898 0.0717 43 1 6.4680 -10.6764 -1.1120 44 1 8.3612 -9.0714 -0.8025 45 1 2.6886 -4.3646 -0.0095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958525446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:47 Heat of formation + Delta-G solvation = 53.142222 kcal Electronic energy + Delta-G solvation = -29292.777612 eV Core-core repulsion = 25120.006387 eV Total energy + Delta-G solvation = -4172.771225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.00639 -39.99186 -38.63377 -37.94416 -35.11744 -34.81727 -34.23886 -32.48722 -32.02960 -30.88061 -29.47887 -28.04062 -27.29549 -25.51110 -24.37761 -24.16741 -23.12873 -21.35714 -21.00774 -20.27340 -19.85238 -18.20217 -18.09803 -17.71772 -17.14174 -16.68253 -16.29200 -15.98163 -15.33270 -15.26963 -14.61725 -14.59934 -14.44310 -14.08702 -13.88921 -13.74931 -13.68858 -13.44438 -13.36503 -13.19727 -12.94203 -12.70594 -12.48531 -12.23116 -11.59532 -11.56685 -11.06051 -10.87541 -10.77864 -10.70373 -10.59752 -10.46834 -10.22038 -10.02462 -9.73540 -9.68232 -9.50307 -9.32422 -9.08065 -8.69016 -8.44986 -6.97311 -6.12406 -3.14347 0.33946 0.45866 1.67692 1.98316 2.68764 3.04420 3.49167 3.52599 3.53823 3.65764 3.71055 3.82623 4.13824 4.39781 4.43900 4.49662 4.59574 4.67610 4.81404 4.85612 4.96559 4.96904 5.07708 5.12544 5.16142 5.20207 5.27759 5.51953 5.61360 5.68452 5.74520 5.85312 5.89510 5.97357 6.18615 6.22575 6.29500 6.38323 6.50044 6.69244 6.81782 6.86618 6.94044 7.39826 7.43957 7.72681 8.05902 8.13093 8.44942 8.98658 9.78537 10.32012 11.20910 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.002188 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.423730 B =12792.801885 C =13903.376074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.393 5.393 3 N -0.241 5.241 4 C 0.097 3.903 5 C -0.239 4.239 6 C 0.073 3.927 7 C -0.231 4.231 8 C 0.569 3.431 9 O -0.539 6.539 10 N -0.721 5.721 11 C 0.141 3.859 12 C -0.108 4.108 13 H 0.088 0.912 14 C 0.145 3.855 15 N -0.597 5.597 16 C -0.331 4.331 17 H 0.066 0.934 18 C -0.027 4.027 19 N -0.922 5.922 20 Si 1.063 2.937 21 H -0.294 1.294 22 H -0.293 1.293 23 H -0.285 1.285 24 C 0.118 3.882 25 C 0.092 3.908 26 H 0.061 0.939 27 O -0.554 6.554 28 C 0.207 3.793 29 N -0.504 5.504 30 C 0.329 3.671 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.206 0.794 35 H 0.156 0.844 36 H 0.399 0.601 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.021 0.979 41 H 0.267 0.733 42 H 0.033 0.967 43 H 0.058 0.942 44 H 0.376 0.624 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 22.280 7.990 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.183 5.183 3 N -0.053 5.053 4 C -0.102 4.102 5 C -0.249 4.249 6 C 0.044 3.956 7 C -0.238 4.238 8 C 0.355 3.645 9 O -0.417 6.417 10 N -0.372 5.372 11 C 0.018 3.982 12 C -0.127 4.127 13 H 0.107 0.893 14 C 0.019 3.981 15 N -0.324 5.324 16 C -0.459 4.459 17 H 0.084 0.916 18 C -0.228 4.228 19 N -0.564 5.564 20 Si 0.893 3.107 21 H -0.221 1.221 22 H -0.220 1.220 23 H -0.211 1.211 24 C -0.008 4.008 25 C 0.032 3.968 26 H 0.078 0.922 27 O -0.359 6.359 28 C 0.036 3.964 29 N -0.218 5.218 30 C 0.090 3.910 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.223 0.777 35 H 0.173 0.827 36 H 0.234 0.766 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.223 0.777 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.045 22.359 7.006 23.777 hybrid contribution 0.766 0.341 0.861 1.202 sum -3.279 22.700 7.866 24.247 Atomic orbital electron populations 1.21875 0.73060 1.04703 1.03479 1.48151 1.06510 1.00007 1.63587 1.76751 1.02741 1.07362 1.18412 1.25156 0.94905 0.92515 0.97622 1.20472 0.94015 0.94847 1.15616 1.21177 0.99364 0.89958 0.85056 1.20699 0.94927 0.94618 1.13587 1.17760 0.87921 0.82193 0.76600 1.90786 1.19126 1.81525 1.50277 1.45988 1.10875 1.05572 1.74810 1.21240 0.89155 0.84583 1.03185 1.22522 0.96992 0.93177 1.00000 0.89341 1.21333 0.95808 0.88510 0.92454 1.44387 1.57632 1.06486 1.23919 1.19760 1.41083 0.91929 0.93117 0.91617 1.25701 0.99811 0.92384 1.04885 1.70817 1.48672 1.37502 0.99404 0.83541 0.76286 0.76127 0.74737 1.22114 1.22046 1.21102 1.22276 0.93438 0.93411 0.91710 1.23012 0.86033 0.94783 0.92997 0.92161 1.86435 1.28960 1.46349 1.74143 1.22912 0.86855 0.98415 0.88231 1.66688 1.37327 0.98490 1.19265 1.19149 0.88702 0.88187 0.94996 0.90889 0.89247 0.88914 0.77722 0.82663 0.76633 0.91454 0.89825 0.95082 0.96126 0.92116 0.94984 0.92404 0.77740 0.81308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.72 11.43 59.85 0.68 1.41 16 2 N -0.39 -3.97 4.03 -67.17 -0.27 -4.24 16 3 N -0.24 -2.36 12.39 31.87 0.39 -1.96 16 4 C 0.10 0.78 12.30 -15.14 -0.19 0.59 16 5 C -0.24 -2.42 6.36 -105.20 -0.67 -3.09 16 6 C 0.07 0.74 9.76 -38.58 -0.38 0.36 16 7 C -0.23 -2.55 5.89 -104.84 -0.62 -3.17 16 8 C 0.57 7.52 7.77 -12.40 -0.10 7.42 16 9 O -0.54 -8.89 16.40 5.31 0.09 -8.80 16 10 N -0.72 -8.88 5.35 -61.30 -0.33 -9.21 16 11 C 0.14 2.04 4.60 -4.04 -0.02 2.02 16 12 C -0.11 -1.68 2.93 -88.79 -0.26 -1.94 16 13 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 14 C 0.14 2.87 6.52 -3.06 -0.02 2.85 16 15 N -0.60 -14.76 3.33 -169.93 -0.57 -15.32 16 16 C -0.33 -9.29 10.05 -15.06 -0.15 -9.44 16 17 H 0.07 1.85 7.96 -52.48 -0.42 1.43 16 18 C -0.03 -0.77 5.09 -17.43 -0.09 -0.85 16 19 N -0.92 -27.31 12.82 55.49 0.71 -26.60 16 20 Si 1.06 25.28 30.00 -169.99 -5.10 20.19 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.12 2.58 4.97 -2.40 -0.01 2.57 16 25 C 0.09 1.55 4.17 -24.45 -0.10 1.45 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 O -0.55 -9.32 12.25 -35.23 -0.43 -9.75 16 28 C 0.21 2.10 10.69 -17.10 -0.18 1.92 16 29 N -0.50 -5.74 10.37 -12.03 -0.12 -5.86 16 30 C 0.33 3.72 7.96 -156.08 -1.24 2.48 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.21 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.16 1.36 7.72 -52.49 -0.41 0.96 16 36 H 0.40 4.02 6.37 -40.82 -0.26 3.76 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.44 7.45 -51.93 -0.39 1.05 16 39 H 0.03 0.65 7.77 -51.93 -0.40 0.25 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.27 7.84 5.83 -40.82 -0.24 7.60 16 42 H 0.03 0.74 6.84 -51.93 -0.36 0.39 16 43 H 0.06 1.40 7.73 -51.93 -0.40 1.00 16 44 H 0.38 4.95 9.12 45.56 0.42 5.36 16 45 H 0.17 1.29 6.39 -52.48 -0.34 0.95 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -37.19 376.96 -8.25 -45.44 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.96 Total: 5.84 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -3.34 Total: 4.59 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.18 Total: -63.19 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.34 Total: -18.55 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.10 Total: 20.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.19 -8.25 -45.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958525446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.584 kcal (2) G-P(sol) polarization free energy of solvation -37.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds