Wall clock time and date at job start Wed Apr 1 2020 03:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39800 * 125.34330 * 2 1 4 4 C 1.30205 * 110.13413 * 179.97438 * 3 2 1 5 5 C 1.45975 * 107.58371 * 0.02562 * 4 3 2 6 6 C 1.39657 * 134.11474 * 180.02562 * 5 4 3 7 7 C 1.39514 * 117.94532 * 179.97438 * 6 5 4 8 8 C 1.47684 * 120.40541 * 179.97438 * 7 6 5 9 9 O 1.21566 * 120.00368 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99643 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99895 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46858 * 180.02562 * 11 10 8 13 13 H 1.08996 * 110.64067 * 303.30523 * 12 11 10 14 14 C 1.54320 * 110.72234 * 66.45360 * 12 11 10 15 15 N 1.47029 * 107.27322 * 140.73520 * 14 12 11 16 16 C 1.36933 * 125.64936 * 181.02206 * 15 14 12 17 17 H 1.08003 * 119.99721 * 13.63215 * 16 15 14 18 18 C 1.38816 * 119.99961 * 193.62770 * 16 15 14 19 19 N 1.31616 * 119.99775 * 27.26821 * 18 16 15 20 20 Si 1.86796 * 119.99890 * 207.26642 * 18 16 15 21 21 H 1.48502 * 109.47389 * 60.00434 * 20 18 16 22 22 H 1.48499 * 109.47223 * 300.00034 * 20 18 16 23 23 H 1.48500 * 109.47095 * 180.02562 * 20 18 16 24 24 C 1.47425 * 108.70123 * 1.28326 * 15 14 12 25 25 C 1.55140 * 104.72236 * 335.55406 * 24 15 14 26 26 H 1.08992 * 110.90138 * 155.27569 * 25 24 15 27 27 O 1.42899 * 111.22399 * 279.18013 * 25 24 15 28 28 C 1.40176 * 119.18268 * 0.24662 * 7 6 5 29 29 N 1.31191 * 121.37612 * 359.46877 * 28 7 6 30 30 C 1.32930 * 121.84116 * 0.55001 * 29 28 7 31 31 H 1.09001 * 109.46781 * 270.03662 * 1 2 3 32 32 H 1.08999 * 109.47090 * 30.03037 * 1 2 3 33 33 H 1.08999 * 109.47584 * 150.03802 * 1 2 3 34 34 H 1.07992 * 126.20922 * 180.02562 * 4 3 2 35 35 H 1.07995 * 121.02799 * 0.02562 * 6 5 4 36 36 H 0.96998 * 120.00190 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.47451 * 59.99349 * 11 10 8 38 38 H 1.09004 * 109.46573 * 299.99734 * 11 10 8 39 39 H 1.08996 * 109.88396 * 21.31395 * 14 12 11 40 40 H 1.09003 * 110.01118 * 260.21543 * 14 12 11 41 41 H 0.97006 * 120.00147 * 5.85176 * 19 18 16 42 42 H 1.08995 * 110.36729 * 94.48746 * 24 15 14 43 43 H 1.08999 * 110.36759 * 216.81246 * 24 15 14 44 44 H 0.96705 * 113.99864 * 292.19978 * 27 25 24 45 45 H 1.08003 * 119.31409 * 179.72569 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1404 0.0000 4 6 3.5301 0.7988 0.0005 5 6 3.5906 -0.6597 0.0003 6 6 4.6327 -1.5895 0.0011 7 6 4.3000 -2.9444 0.0011 8 6 5.3588 -3.9740 0.0013 9 8 6.5285 -3.6431 0.0011 10 7 5.0281 -5.2806 0.0018 11 6 6.0783 -6.3020 0.0027 12 6 5.4382 -7.6916 0.0025 13 1 4.7682 -7.8061 0.8545 14 6 4.6868 -7.9465 -1.3212 15 7 4.9283 -9.3472 -1.6975 16 6 4.4514 -9.9648 -2.8228 17 1 4.0336 -9.3760 -3.6260 18 6 4.5051 -11.3477 -2.9311 19 7 4.4881 -12.0938 -1.8470 20 14 4.6013 -12.1495 -4.6155 21 1 5.8271 -11.6872 -5.3146 22 1 3.4056 -11.7734 -5.4118 23 1 4.6470 -13.6256 -4.4591 24 6 5.7637 -9.9782 -0.6596 25 6 6.5238 -8.8003 0.0049 26 1 6.8210 -9.0539 1.0224 27 8 7.6562 -8.4100 -0.7745 28 6 2.9485 -3.3164 -0.0050 29 7 1.9927 -2.4177 -0.0002 30 6 2.2553 -1.1146 -0.0003 31 1 -0.3633 0.0007 1.0277 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3634 -0.8903 -0.5132 34 1 4.3743 1.4722 0.0011 35 1 5.6642 -1.2696 0.0025 36 1 4.0947 -5.5447 0.0024 37 1 6.6968 -6.1866 0.8927 38 1 6.6973 -6.1874 -0.8873 39 1 5.0679 -7.2831 -2.0975 40 1 3.6188 -7.7791 -1.1820 41 1 4.3528 -11.6840 -0.9782 42 1 5.1380 -10.4898 0.0717 43 1 6.4680 -10.6764 -1.1120 44 1 8.3612 -9.0714 -0.8025 45 1 2.6886 -4.3646 -0.0095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958525446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:44 Heat of formation + Delta-G solvation = 24.391385 kcal Electronic energy + Delta-G solvation = -29294.024342 eV Core-core repulsion = 25120.006387 eV Total energy + Delta-G solvation = -4174.017955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.73956 -41.04089 -40.00472 -38.84250 -36.52661 -36.24937 -34.94032 -34.11212 -32.86509 -31.91649 -30.88416 -29.61737 -28.00879 -27.00854 -25.68902 -25.03578 -24.28924 -22.37387 -22.03471 -21.63909 -21.19375 -19.70387 -19.10119 -18.82154 -18.35741 -17.73384 -17.00616 -16.91514 -16.42531 -16.34316 -16.25494 -15.91816 -15.61495 -15.27619 -15.13937 -14.99481 -14.77932 -14.53213 -14.34806 -14.21862 -14.00246 -13.81089 -13.47034 -13.35120 -13.14964 -12.72053 -12.54582 -12.36086 -12.27700 -12.15360 -11.91394 -11.80909 -11.64548 -11.60229 -11.29780 -10.85705 -10.61534 -10.52852 -10.27679 -10.14608 -9.44856 -8.98906 -8.31567 -5.29636 -0.39236 -0.36432 1.03274 1.32177 1.57020 1.64371 1.74204 1.83443 2.03436 2.63211 2.67889 2.97381 3.14541 3.17023 3.25046 3.46107 3.46604 3.58444 3.68854 3.81362 3.82330 3.89204 3.93944 4.22204 4.33829 4.35379 4.37522 4.42740 4.46731 4.58075 4.62851 4.73425 4.82980 4.90576 4.93890 5.04910 5.07729 5.12571 5.27727 5.30147 5.38343 5.61253 5.64824 6.24515 6.32843 6.44529 6.65770 6.86339 6.94606 7.12323 7.71286 8.28609 9.01571 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.002188 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.423730 B =12792.801885 C =13903.376074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.262 5.262 4 C 0.111 3.889 5 C -0.251 4.251 6 C 0.080 3.920 7 C -0.243 4.243 8 C 0.574 3.426 9 O -0.575 6.575 10 N -0.714 5.714 11 C 0.156 3.844 12 C -0.092 4.092 13 H 0.118 0.882 14 C 0.141 3.859 15 N -0.622 5.622 16 C -0.343 4.343 17 H 0.056 0.944 18 C -0.077 4.077 19 N -0.947 5.947 20 Si 1.112 2.888 21 H -0.285 1.285 22 H -0.276 1.276 23 H -0.290 1.290 24 C 0.118 3.882 25 C 0.105 3.895 26 H 0.101 0.899 27 O -0.566 6.566 28 C 0.210 3.790 29 N -0.519 5.519 30 C 0.310 3.690 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.246 0.754 35 H 0.167 0.833 36 H 0.410 0.590 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.017 0.983 40 H 0.029 0.971 41 H 0.258 0.742 42 H 0.020 0.980 43 H 0.025 0.975 44 H 0.391 0.609 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 23.850 8.630 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.190 5.190 3 N -0.073 5.073 4 C -0.088 4.088 5 C -0.261 4.261 6 C 0.051 3.949 7 C -0.250 4.250 8 C 0.361 3.639 9 O -0.456 6.456 10 N -0.365 5.365 11 C 0.032 3.968 12 C -0.111 4.111 13 H 0.136 0.864 14 C 0.017 3.983 15 N -0.349 5.349 16 C -0.471 4.471 17 H 0.074 0.926 18 C -0.273 4.273 19 N -0.591 5.591 20 Si 0.936 3.064 21 H -0.212 1.212 22 H -0.202 1.202 23 H -0.216 1.216 24 C -0.008 4.008 25 C 0.044 3.956 26 H 0.118 0.882 27 O -0.373 6.373 28 C 0.039 3.961 29 N -0.234 5.234 30 C 0.070 3.930 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.262 0.738 35 H 0.185 0.815 36 H 0.248 0.752 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.043 0.957 44 H 0.240 0.760 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.053 23.967 7.656 25.484 hybrid contribution 0.735 -0.064 0.651 0.984 sum -3.318 23.903 8.307 25.522 Atomic orbital electron populations 1.22088 0.71681 1.05504 1.04408 1.48486 1.07520 0.99749 1.63202 1.76752 1.03458 1.07527 1.19583 1.25838 0.95428 0.92042 0.95443 1.20687 0.93511 0.95955 1.15934 1.21339 1.00000 0.89710 0.83843 1.20536 0.94625 0.94443 1.15424 1.17983 0.87799 0.82495 0.75586 1.90767 1.20651 1.82045 1.52095 1.45853 1.11155 1.05101 1.74406 1.20942 0.89243 0.84225 1.02376 1.22475 0.96549 0.93521 0.98537 0.86420 1.21455 0.96797 0.85779 0.94318 1.44664 1.58107 1.08290 1.23863 1.19984 1.40611 0.92296 0.94239 0.92648 1.26963 0.99743 0.93295 1.07263 1.70909 1.50932 1.37725 0.99531 0.82888 0.77148 0.74932 0.71385 1.21164 1.20214 1.21554 1.22283 0.92775 0.94851 0.90846 1.22971 0.85828 0.92694 0.94058 0.88159 1.86418 1.29321 1.47093 1.74479 1.23212 0.86370 0.99250 0.87258 1.66729 1.37705 0.98830 1.20142 1.19496 0.89746 0.88533 0.95219 0.89886 0.87769 0.88818 0.73811 0.81535 0.75223 0.90306 0.92616 0.96497 0.95348 0.93129 0.96200 0.95678 0.76012 0.79267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.25 11.43 127.77 1.46 2.71 16 2 N -0.40 -7.62 4.03 -366.44 -1.48 -9.10 16 3 N -0.26 -4.69 12.39 -53.08 -0.66 -5.35 16 4 C 0.11 1.54 12.30 86.94 1.07 2.61 16 5 C -0.25 -4.68 6.36 -20.24 -0.13 -4.81 16 6 C 0.08 1.50 9.76 22.92 0.22 1.72 16 7 C -0.24 -5.05 5.89 -20.00 -0.12 -5.17 16 8 C 0.57 14.44 7.77 86.74 0.67 15.11 16 9 O -0.57 -18.44 16.40 -3.92 -0.06 -18.50 16 10 N -0.71 -16.31 5.35 -466.12 -2.50 -18.80 16 11 C 0.16 4.21 4.60 86.38 0.40 4.61 16 12 C -0.09 -2.67 2.93 -9.61 -0.03 -2.70 16 13 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 14 C 0.14 5.52 6.52 86.73 0.57 6.09 16 15 N -0.62 -31.00 3.33 -691.52 -2.30 -33.30 16 16 C -0.34 -19.50 10.05 84.03 0.84 -18.66 16 17 H 0.06 3.18 7.96 -2.91 -0.02 3.15 16 18 C -0.08 -4.40 5.09 84.86 0.43 -3.97 16 19 N -0.95 -57.18 12.82 21.65 0.28 -56.90 16 20 Si 1.11 51.48 30.00 68.60 2.06 53.53 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 C 0.12 5.22 4.97 86.94 0.43 5.65 16 25 C 0.10 3.33 4.17 32.07 0.13 3.47 16 26 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 27 O -0.57 -18.29 12.25 -148.98 -1.82 -20.11 16 28 C 0.21 3.99 10.69 85.26 0.91 4.90 16 29 N -0.52 -11.31 10.37 -191.96 -1.99 -13.30 16 30 C 0.31 6.67 7.96 134.17 1.07 7.74 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.25 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.17 2.67 7.72 -2.91 -0.02 2.65 16 36 H 0.41 7.38 6.37 -92.71 -0.59 6.79 16 37 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.86 7.45 -2.39 -0.02 1.84 16 39 H 0.02 0.71 7.77 -2.39 -0.02 0.69 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.26 15.53 5.83 -92.70 -0.54 14.99 16 42 H 0.02 0.94 6.84 -2.39 -0.02 0.92 16 43 H 0.02 1.24 7.73 -2.39 -0.02 1.22 16 44 H 0.39 9.82 9.12 -74.05 -0.68 9.14 16 45 H 0.19 2.55 6.39 -2.91 -0.02 2.53 16 Total: -1.00 -82.00 376.96 -0.52 -82.52 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.02 Total: 20.02 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 7.94 Total: 19.29 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -8.64 Total: -136.75 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.89 Total: -38.62 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.06 Total: 53.53 kcal Total: -82.00 -0.52 -82.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958525446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.909 kcal (2) G-P(sol) polarization free energy of solvation -82.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds