Wall clock time and date at job start Wed Apr 1 2020 03:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28820 * 125.94270 * 2 1 4 4 N 1.28644 * 111.79229 * 179.97438 * 3 2 1 5 5 C 1.34750 * 109.29375 * 0.02562 * 4 3 2 6 6 C 1.39899 * 134.59254 * 180.02562 * 5 4 3 7 7 C 1.36164 * 119.97856 * 179.97438 * 6 5 4 8 8 C 1.40255 * 120.55648 * 0.02562 * 7 6 5 9 9 C 1.47720 * 119.87953 * 179.97438 * 8 7 6 10 10 O 1.21572 * 119.99726 * 180.02562 * 9 8 7 11 11 N 1.34770 * 120.00136 * 359.97438 * 9 8 7 12 12 C 1.46503 * 119.99968 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47329 * 180.02562 * 12 11 9 14 14 H 1.09004 * 110.91549 * 302.55831 * 13 12 11 15 15 C 1.54917 * 111.00242 * 66.45559 * 13 12 11 16 16 N 1.47421 * 104.83002 * 155.08843 * 15 13 12 17 17 C 1.36936 * 125.64616 * 155.84135 * 16 15 13 18 18 H 1.08001 * 120.00149 * 359.97438 * 17 16 15 19 19 C 1.38822 * 119.99936 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99690 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00114 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46994 * 90.00079 * 21 19 17 23 23 H 1.48498 * 109.47143 * 210.00172 * 21 19 17 24 24 H 1.48504 * 109.47050 * 330.00404 * 21 19 17 25 25 C 1.47021 * 108.70450 * 335.86832 * 16 15 13 26 26 C 1.54326 * 107.27002 * 1.06211 * 25 16 15 27 27 H 1.09003 * 110.71705 * 140.55404 * 26 25 16 28 28 O 1.42892 * 110.72204 * 263.82884 * 26 25 16 29 29 C 1.39169 * 120.23725 * 0.22954 * 8 7 6 30 30 C 1.37361 * 125.94389 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47805 * 90.02001 * 1 2 3 32 32 H 1.09006 * 109.46709 * 210.02320 * 1 2 3 33 33 H 1.08996 * 109.46953 * 330.01639 * 1 2 3 34 34 H 1.08006 * 120.01497 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.72193 * 179.97438 * 7 6 5 36 36 H 0.96996 * 120.00278 * 0.02562 * 11 9 8 37 37 H 1.09006 * 109.46676 * 60.00540 * 12 11 9 38 38 H 1.08999 * 109.47518 * 300.00805 * 12 11 9 39 39 H 1.09002 * 110.36419 * 273.92650 * 15 13 12 40 40 H 1.08994 * 110.36559 * 36.13399 * 15 13 12 41 41 H 0.97002 * 119.99882 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.88310 * 120.48076 * 25 16 15 43 43 H 1.09002 * 109.88672 * 241.49116 * 25 16 15 44 44 H 0.96706 * 114.00295 * 293.52015 * 28 26 25 45 45 H 1.07997 * 120.24296 * 179.72727 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7284 0.0005 5 6 3.5893 -0.6136 0.0004 6 6 4.6696 -1.5025 0.0012 7 6 4.4455 -2.8456 0.0012 8 6 3.1369 -3.3502 -0.0001 9 6 2.9111 -4.8101 -0.0006 10 8 1.7777 -5.2498 -0.0022 11 7 3.9615 -5.6544 -0.0004 12 6 3.7375 -7.1022 -0.0003 13 6 5.0850 -7.8268 0.0007 14 1 5.6877 -7.5287 -0.8572 15 6 5.8467 -7.5808 1.3270 16 7 6.7469 -8.7400 1.4657 17 6 7.9107 -8.7649 2.1869 18 1 8.2372 -7.8817 2.7159 19 6 8.6709 -9.9253 2.2381 20 7 8.2732 -11.0015 1.5930 21 14 10.2588 -9.9591 3.2212 22 1 9.9694 -10.3834 4.6147 23 1 11.2063 -10.9181 2.5985 24 1 10.8631 -8.6026 3.2323 25 6 6.1885 -9.8648 0.7011 26 6 4.8890 -9.3656 0.0349 27 1 4.7954 -9.7649 -0.9750 28 8 3.7501 -9.7127 0.8249 29 6 2.0505 -2.4805 -0.0063 30 6 2.2713 -1.1121 0.0005 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8901 0.5136 34 1 5.6810 -1.1237 0.0018 35 1 5.2826 -3.5281 0.0014 36 1 4.8658 -5.3036 0.0005 37 1 3.1743 -7.3827 -0.8905 38 1 3.1738 -7.3827 0.8895 39 1 6.4234 -6.6577 1.2676 40 1 5.1487 -7.5380 2.1630 41 1 8.8042 -11.8125 1.6290 42 1 6.8982 -10.1825 -0.0626 43 1 5.9685 -10.6958 1.3713 44 1 3.5836 -10.6638 0.8784 45 1 1.0428 -2.8690 -0.0117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958625319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:02 Heat of formation + Delta-G solvation = 38.587355 kcal Electronic energy + Delta-G solvation = -29308.887567 eV Core-core repulsion = 25135.485196 eV Total energy + Delta-G solvation = -4173.402372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -44.29234 -41.15377 -39.87281 -38.46293 -36.38255 -36.14202 -35.90897 -33.95728 -32.23179 -31.89429 -31.01747 -29.40706 -28.84388 -27.34312 -26.01758 -24.68050 -24.47776 -22.35441 -22.19495 -21.69586 -21.16451 -19.49568 -19.03670 -18.77699 -18.19290 -17.80605 -17.45577 -17.05764 -16.77046 -16.34634 -15.84365 -15.74675 -15.42329 -15.29503 -15.09408 -14.80434 -14.44223 -14.36389 -14.34125 -14.17848 -13.79604 -13.56280 -13.26757 -13.13292 -13.10356 -12.99439 -12.79181 -12.64983 -12.32094 -12.03015 -11.87799 -11.84183 -11.82806 -11.74393 -11.57506 -11.08118 -10.75402 -10.69539 -10.25218 -10.00302 -9.44917 -8.87829 -7.83882 -5.18363 -0.80284 0.07355 0.96332 1.15119 1.48229 1.49347 1.57778 1.80202 2.06494 2.50789 2.64015 2.84320 3.31012 3.38954 3.44408 3.54663 3.57035 3.62551 3.91602 3.94831 3.96130 3.97271 4.05764 4.21984 4.26306 4.42885 4.48324 4.57064 4.62866 4.67716 4.80695 4.85287 4.88629 4.97269 5.05251 5.09527 5.14379 5.32370 5.40678 5.43545 5.45821 5.50629 5.56589 5.73928 6.20527 6.48895 6.96082 7.11825 7.13730 7.14092 7.79145 8.42993 9.26313 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.002194 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.641408 B =12761.344649 C =14150.421717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.304 5.304 3 N -0.031 5.031 4 N -0.291 5.291 5 C 0.011 3.989 6 C -0.057 4.057 7 C -0.080 4.080 8 C -0.108 4.108 9 C 0.562 3.438 10 O -0.574 6.574 11 N -0.708 5.708 12 C 0.155 3.845 13 C -0.093 4.093 14 H 0.111 0.889 15 C 0.141 3.859 16 N -0.625 5.625 17 C -0.238 4.238 18 H 0.084 0.916 19 C -0.067 4.067 20 N -0.952 5.952 21 Si 0.976 3.024 22 H -0.291 1.291 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.159 3.841 26 C 0.095 3.905 27 H 0.087 0.913 28 O -0.570 6.570 29 C -0.029 4.029 30 C 0.002 3.998 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.246 0.754 42 H 0.023 0.977 43 H 0.012 0.988 44 H 0.390 0.610 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.824 18.036 -7.181 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.106 5.106 3 N -0.012 5.012 4 N -0.164 5.164 5 C -0.116 4.116 6 C -0.078 4.078 7 C -0.101 4.101 8 C -0.115 4.115 9 C 0.349 3.651 10 O -0.454 6.454 11 N -0.359 5.359 12 C 0.031 3.969 13 C -0.113 4.113 14 H 0.129 0.871 15 C 0.016 3.984 16 N -0.351 5.351 17 C -0.367 4.367 18 H 0.102 0.898 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.805 3.195 22 H -0.218 1.218 23 H -0.222 1.222 24 H -0.191 1.191 25 C 0.033 3.967 26 C 0.035 3.965 27 H 0.105 0.895 28 O -0.378 6.378 29 C -0.051 4.051 30 C -0.117 4.117 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.183 0.817 35 H 0.185 0.815 36 H 0.252 0.748 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.055 0.945 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.240 0.760 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.537 19.785 -7.063 26.130 hybrid contribution 1.202 -2.057 0.675 2.476 sum -14.335 17.728 -6.388 23.677 Atomic orbital electron populations 1.22794 0.69102 1.07929 1.06986 1.47557 1.10371 1.02083 1.50557 1.77917 0.97067 1.13176 1.12992 1.75326 1.08266 1.12246 1.20544 1.20523 0.94477 0.91133 1.05418 1.20206 0.98239 0.90870 0.98524 1.21148 0.96022 0.95444 0.97479 1.19689 0.94375 0.91967 1.05509 1.18220 0.84498 0.86313 0.76021 1.90771 1.23783 1.79114 1.51757 1.45865 1.09715 1.06691 1.73664 1.20931 0.95777 0.77841 1.02371 1.22595 0.95777 0.93537 0.99362 0.87115 1.21715 0.91518 0.90700 0.94483 1.44694 1.23124 1.09509 1.57764 1.19470 0.97050 0.97474 1.22661 0.89795 1.25609 1.02493 0.95860 1.02061 1.70144 1.40148 1.02182 1.47656 0.85112 0.79193 0.77598 0.77646 1.21814 1.22201 1.19098 1.21688 0.91749 0.89786 0.93450 1.22957 0.85011 0.94718 0.93838 0.89495 1.86377 1.47068 1.30299 1.74074 1.20113 1.00842 0.87334 0.96835 1.19698 0.91126 0.91157 1.09730 0.87078 0.86419 0.86065 0.81657 0.81453 0.74829 0.90733 0.92176 0.92555 0.96969 0.94482 0.95926 0.96992 0.76033 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.40 127.77 1.46 1.86 16 2 N -0.30 -5.13 3.80 -361.28 -1.37 -6.51 16 3 N -0.03 -0.68 13.07 37.02 0.48 -0.20 16 4 N -0.29 -7.28 12.42 -52.39 -0.65 -7.93 16 5 C 0.01 0.24 7.36 39.75 0.29 0.54 16 6 C -0.06 -0.93 10.03 22.19 0.22 -0.71 16 7 C -0.08 -1.19 9.46 22.28 0.21 -0.98 16 8 C -0.11 -2.07 5.88 -20.06 -0.12 -2.19 16 9 C 0.56 13.38 7.77 86.75 0.67 14.05 16 10 O -0.57 -17.68 16.32 -3.94 -0.06 -17.75 16 11 N -0.71 -15.29 5.36 -466.09 -2.50 -17.79 16 12 C 0.15 4.06 4.74 86.38 0.41 4.47 16 13 C -0.09 -2.73 3.03 -9.40 -0.03 -2.76 16 14 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 15 C 0.14 5.23 6.40 86.86 0.56 5.78 16 16 N -0.62 -30.38 3.39 -691.98 -2.35 -32.73 16 17 C -0.24 -12.80 10.28 84.04 0.86 -11.94 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.07 -3.73 5.49 84.86 0.47 -3.27 16 20 N -0.95 -55.51 10.31 21.66 0.22 -55.29 16 21 Si 0.98 44.66 29.55 68.60 2.03 46.69 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 C 0.16 7.30 5.14 86.73 0.45 7.75 16 26 C 0.09 3.14 4.08 31.78 0.13 3.27 16 27 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 28 O -0.57 -18.28 12.09 -148.98 -1.80 -20.08 16 29 C -0.03 -0.52 9.59 22.58 0.22 -0.31 16 30 C 0.00 0.04 6.93 39.02 0.27 0.31 16 31 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.17 1.58 6.36 -2.91 -0.02 1.57 16 36 H 0.41 6.83 6.33 -92.71 -0.59 6.24 16 37 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.06 1.91 7.42 -2.39 -0.02 1.89 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.01 0.50 8.00 -2.39 -0.02 0.48 16 41 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 43 H 0.01 0.63 7.43 -2.39 -0.02 0.61 16 44 H 0.39 9.84 9.12 -74.05 -0.68 9.17 16 45 H 0.15 2.50 7.63 -2.91 -0.02 2.48 16 Total: -1.00 -78.93 376.10 -0.14 -79.07 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -0.21 Total: 16.61 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.07 Total: 15.89 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -6.16 Total: -120.43 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.87 Total: -37.82 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -78.93 -0.14 -79.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958625319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.656 kcal (2) G-P(sol) polarization free energy of solvation -78.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds