Wall clock time and date at job start Wed Apr 1 2020 03:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40254 * 126.66168 * 2 1 4 4 N 1.28665 * 109.42387 * 179.97438 * 3 2 1 5 5 C 1.35392 * 110.10245 * 359.97438 * 4 3 2 6 6 C 1.40123 * 133.02964 * 179.97438 * 5 4 3 7 7 C 1.37596 * 120.15312 * 179.97438 * 6 5 4 8 8 C 1.38485 * 120.80294 * 0.02562 * 7 6 5 9 9 C 1.39213 * 120.27506 * 359.97438 * 8 7 6 10 10 C 1.47534 * 120.24648 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99513 * 135.70140 * 10 9 8 12 12 N 1.34775 * 119.99959 * 315.70353 * 10 9 8 13 13 C 1.46492 * 119.99917 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47095 * 179.97438 * 13 12 10 15 15 H 1.09001 * 110.64487 * 56.68883 * 14 13 12 16 16 C 1.54325 * 110.72270 * 293.54547 * 14 13 12 17 17 N 1.47019 * 107.27066 * 219.44591 * 16 14 13 18 18 C 1.36943 * 125.64361 * 178.90618 * 17 16 14 19 19 H 1.07994 * 120.00326 * 355.57403 * 18 17 16 20 20 C 1.38817 * 119.99462 * 175.57782 * 18 17 16 21 21 N 1.31624 * 119.99308 * 154.81618 * 20 18 17 22 22 Si 1.86792 * 120.00370 * 334.82176 * 20 18 17 23 23 H 1.48505 * 109.47159 * 89.42385 * 22 20 18 24 24 H 1.48501 * 109.47209 * 209.42343 * 22 20 18 25 25 H 1.48500 * 109.47399 * 329.42430 * 22 20 18 26 26 C 1.47426 * 108.70590 * 358.93852 * 17 16 14 27 27 C 1.54910 * 104.83058 * 24.13053 * 26 17 16 28 28 H 1.08994 * 111.00097 * 204.91760 * 27 26 17 29 29 O 1.42898 * 111.00420 * 81.06421 * 27 26 17 30 30 C 1.36972 * 126.66675 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.47093 * 276.13547 * 1 2 3 32 32 H 1.08995 * 109.47650 * 36.14181 * 1 2 3 33 33 H 1.09006 * 109.47234 * 156.14228 * 1 2 3 34 34 H 1.07996 * 119.92154 * 0.02562 * 6 5 4 35 35 H 1.08003 * 119.59770 * 180.27897 * 7 6 5 36 36 H 1.08005 * 119.86214 * 180.02562 * 8 7 6 37 37 H 0.97003 * 120.00025 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.47272 * 299.99707 * 13 12 10 39 39 H 1.09001 * 109.47297 * 59.99794 * 13 12 10 40 40 H 1.09006 * 109.87812 * 338.86074 * 16 14 13 41 41 H 1.09000 * 109.87916 * 100.02539 * 16 14 13 42 42 H 0.97002 * 119.99393 * 179.97438 * 21 20 18 43 43 H 1.08998 * 110.36806 * 142.97014 * 26 17 16 44 44 H 1.09001 * 110.36636 * 265.18203 * 26 17 16 45 45 H 0.96705 * 113.99565 * 67.80371 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3024 1.1251 0.0000 4 7 3.5313 0.7438 0.0005 5 6 3.5989 -0.6084 0.0015 6 6 4.6697 -1.5122 0.0019 7 6 4.4305 -2.8672 0.0035 8 6 3.1358 -3.3588 0.0041 9 6 2.0529 -2.4839 0.0037 10 6 0.6739 -3.0083 0.0038 11 8 -0.1621 -2.5196 0.7390 12 7 0.3410 -4.0290 -0.8109 13 6 -1.0284 -4.5493 -0.8112 14 6 -1.1382 -5.6956 -1.8185 15 1 -0.4133 -6.4773 -1.5917 16 6 -0.9483 -5.1765 -3.2594 17 7 -1.9066 -5.8949 -4.1120 18 6 -2.0724 -5.7087 -5.4586 19 1 -1.5205 -4.9330 -5.9685 20 6 -2.9500 -6.5171 -6.1681 21 7 -3.4933 -6.0781 -7.2836 22 14 -3.3598 -8.2277 -5.5396 23 1 -4.5334 -8.1539 -4.6326 24 1 -3.6768 -9.1142 -6.6880 25 1 -2.1952 -8.7751 -4.7985 26 6 -2.6600 -6.8483 -3.2772 27 6 -2.5798 -6.2688 -1.8428 28 1 -2.7006 -7.0543 -1.0969 29 8 -3.5461 -5.2330 -1.6542 30 6 2.2829 -1.0987 0.0005 31 1 -0.3634 0.1098 1.0219 32 1 -0.3634 0.8298 -0.6061 33 1 -0.3634 -0.9399 -0.4157 34 1 5.6851 -1.1444 0.0018 35 1 5.2626 -3.5558 0.0083 36 1 2.9656 -4.4253 0.0058 37 1 1.0080 -4.4186 -1.3977 38 1 -1.2783 -4.9151 0.1847 39 1 -1.7193 -3.7537 -1.0900 40 1 -1.1489 -4.1057 -3.2970 41 1 0.0693 -5.3772 -3.5946 42 1 -4.1063 -6.6431 -7.7796 43 1 -3.6975 -6.9035 -3.6067 44 1 -2.1973 -7.8345 -3.3161 45 1 -4.4619 -5.5435 -1.6619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958764080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:11 Heat of formation + Delta-G solvation = 43.538950 kcal Electronic energy + Delta-G solvation = -30196.272734 eV Core-core repulsion = 26023.085080 eV Total energy + Delta-G solvation = -4173.187654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.25371 -41.03082 -40.01514 -38.36551 -36.45684 -36.25761 -35.55878 -34.16320 -32.56848 -31.45271 -31.31591 -29.67348 -28.57789 -27.56582 -25.73668 -24.83862 -23.70107 -23.25980 -22.76564 -21.37544 -20.94718 -19.33423 -19.15666 -18.61404 -18.03084 -17.64197 -17.33910 -17.30711 -16.78989 -16.69158 -16.28091 -15.99217 -15.58668 -15.37954 -15.20504 -15.05549 -14.54853 -14.48905 -14.30178 -14.06360 -13.71774 -13.56604 -13.47612 -13.23567 -13.18297 -13.00557 -12.79783 -12.69448 -12.35218 -12.25524 -12.16696 -11.96610 -11.81854 -11.76188 -11.39675 -11.02739 -10.98341 -10.64339 -10.14412 -10.02249 -9.39161 -9.10163 -8.15070 -5.36110 -0.79552 0.15716 0.86414 1.02953 1.27763 1.39558 1.48716 1.58904 2.03419 2.42015 2.55254 2.96458 2.99565 3.19715 3.35771 3.40842 3.49206 3.68235 3.73083 3.78531 3.83027 3.90325 4.13598 4.20534 4.29311 4.35519 4.38408 4.51970 4.58241 4.62752 4.69956 4.72376 4.74932 4.82946 4.91599 4.98576 5.06367 5.15979 5.24682 5.28422 5.36782 5.41492 5.60758 5.64995 6.08510 6.41282 6.74075 6.80603 6.91047 7.05980 7.55933 8.08357 9.03532 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.002562 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.696007 B =10928.375157 C =11026.765942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.390 5.390 3 N -0.040 5.040 4 N -0.237 5.237 5 C -0.047 4.047 6 C -0.012 4.012 7 C -0.125 4.125 8 C -0.009 4.009 9 C -0.159 4.159 10 C 0.559 3.441 11 O -0.567 6.567 12 N -0.704 5.704 13 C 0.151 3.849 14 C -0.092 4.092 15 H 0.132 0.868 16 C 0.142 3.858 17 N -0.623 5.623 18 C -0.234 4.234 19 H 0.056 0.944 20 C -0.051 4.051 21 N -0.961 5.961 22 Si 0.955 3.045 23 H -0.274 1.274 24 H -0.317 1.317 25 H -0.248 1.248 26 C 0.059 3.941 27 C 0.108 3.892 28 H 0.112 0.888 29 O -0.569 6.569 30 C 0.104 3.896 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.169 0.831 35 H 0.191 0.809 36 H 0.181 0.819 37 H 0.416 0.584 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.014 0.986 41 H 0.042 0.958 42 H 0.260 0.740 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.782 -0.294 20.726 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.183 5.183 3 N -0.019 5.019 4 N -0.114 5.114 5 C -0.173 4.173 6 C -0.034 4.034 7 C -0.145 4.145 8 C -0.031 4.031 9 C -0.167 4.167 10 C 0.347 3.653 11 O -0.447 6.447 12 N -0.355 5.355 13 C 0.028 3.972 14 C -0.110 4.110 15 H 0.150 0.850 16 C 0.017 3.983 17 N -0.350 5.350 18 C -0.363 4.363 19 H 0.074 0.926 20 C -0.244 4.244 21 N -0.609 5.609 22 Si 0.784 3.216 23 H -0.201 1.201 24 H -0.247 1.247 25 H -0.172 1.172 26 C -0.066 4.066 27 C 0.048 3.952 28 H 0.130 0.870 29 O -0.376 6.376 30 C -0.020 4.020 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.186 0.814 35 H 0.208 0.792 36 H 0.199 0.801 37 H 0.253 0.747 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 14.551 1.998 21.061 25.677 hybrid contribution -1.315 -1.599 -1.090 2.340 sum 13.236 0.398 19.972 23.963 Atomic orbital electron populations 1.22372 0.71274 1.05543 1.04991 1.50250 1.08806 1.03321 1.55948 1.81586 0.94406 1.08471 1.17484 1.74775 1.11557 1.11571 1.13523 1.20452 0.93973 0.90060 1.12768 1.21129 0.97856 0.91830 0.92568 1.21477 0.97858 0.94460 1.00728 1.21913 0.90661 1.00865 0.89679 1.18914 0.94777 0.89094 1.13923 1.18232 0.87404 0.79687 0.79990 1.90779 1.52118 1.59708 1.42126 1.45915 1.13336 1.34759 1.41467 1.21016 0.81880 0.95304 0.99015 1.22557 0.96683 0.98603 0.93205 0.85005 1.21493 0.92542 0.94593 0.89664 1.44701 1.42409 1.44448 1.03453 1.18583 1.21061 1.13280 0.83356 0.92640 1.25516 0.98280 1.03366 0.97278 1.70063 1.32461 1.37532 1.20815 0.85966 0.78924 0.80880 0.75863 1.20053 1.24668 1.17241 1.23048 0.96386 0.94004 0.93114 1.22933 0.88600 0.89904 0.93802 0.87013 1.86442 1.19619 1.36491 1.95078 1.19429 0.91433 0.89917 1.01214 0.89315 0.88003 0.88645 0.81397 0.79170 0.80127 0.74706 0.89845 0.92843 0.96761 0.93996 0.93114 0.93751 0.93204 0.75911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.33 10.12 127.77 1.29 3.63 16 2 N -0.39 -10.68 4.10 -360.43 -1.48 -12.16 16 3 N -0.04 -1.19 13.72 37.02 0.51 -0.68 16 4 N -0.24 -6.65 12.40 -52.19 -0.65 -7.30 16 5 C -0.05 -1.09 7.26 39.59 0.29 -0.80 16 6 C -0.01 -0.16 10.09 22.58 0.23 0.07 16 7 C -0.12 -0.90 9.98 22.18 0.22 -0.68 16 8 C -0.01 -0.09 9.41 22.56 0.21 0.12 16 9 C -0.16 -3.08 5.72 -20.06 -0.11 -3.20 16 10 C 0.56 12.45 6.38 86.70 0.55 13.00 16 11 O -0.57 -16.26 13.76 -3.98 -0.05 -16.31 16 12 N -0.70 -12.98 5.34 -466.30 -2.49 -15.47 16 13 C 0.15 3.34 4.59 86.38 0.40 3.74 16 14 C -0.09 -2.13 2.95 -9.60 -0.03 -2.15 16 15 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 16 C 0.14 4.86 6.52 86.73 0.57 5.43 16 17 N -0.62 -28.03 3.34 -691.98 -2.31 -30.34 16 18 C -0.23 -13.29 10.61 84.03 0.89 -12.40 16 19 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 20 C -0.05 -2.97 5.45 84.86 0.46 -2.51 16 21 N -0.96 -60.87 13.97 21.65 0.30 -60.56 16 22 Si 0.95 44.56 24.33 68.60 1.67 46.23 16 23 H -0.27 -11.89 6.42 99.48 0.64 -11.26 16 24 H -0.32 -15.37 7.11 99.48 0.71 -14.66 16 25 H -0.25 -10.46 5.92 99.48 0.59 -9.87 16 26 C 0.06 2.18 4.41 86.86 0.38 2.56 16 27 C 0.11 2.79 4.17 31.99 0.13 2.92 16 28 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 29 O -0.57 -16.03 12.22 -148.98 -1.82 -17.85 16 30 C 0.10 2.58 6.81 39.41 0.27 2.85 16 31 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.10 2.48 5.11 -2.38 -0.01 2.46 16 34 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.19 -0.25 8.06 -2.91 -0.02 -0.28 16 36 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 37 H 0.42 5.56 8.03 -92.71 -0.74 4.82 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.56 7.44 -2.39 -0.02 1.54 16 40 H 0.01 0.55 7.76 -2.38 -0.02 0.53 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 43 H 0.04 1.83 5.24 -2.39 -0.01 1.82 16 44 H 0.05 1.77 5.87 -2.39 -0.01 1.76 16 45 H 0.39 8.34 9.12 -74.05 -0.68 7.66 16 Total: -1.00 -85.19 365.05 -1.11 -86.30 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.54 Total: 15.56 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.75 Total: 12.58 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -6.12 Total: -126.51 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.87 Total: -34.16 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.67 Total: 46.23 kcal Total: -85.19 -1.11 -86.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958764080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.839 kcal (2) G-P(sol) polarization free energy of solvation -85.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds