Wall clock time and date at job start Wed Apr 1 2020 03:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 119.99751 * 2 1 4 4 H 1.08000 * 119.99932 * 153.24103 * 3 2 1 5 5 C 1.38811 * 120.00097 * 332.97158 * 3 2 1 6 6 N 1.31619 * 119.99678 * 350.22231 * 5 3 2 7 7 Si 1.86797 * 119.99980 * 170.22199 * 5 3 2 8 8 H 1.48504 * 109.47182 * 89.99818 * 7 5 3 9 9 H 1.48493 * 109.47250 * 209.99786 * 7 5 3 10 10 H 1.48503 * 109.47138 * 330.00360 * 7 5 3 11 11 C 1.46504 * 120.00289 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88310 * 177.56867 * 11 2 1 13 13 C 1.55153 * 111.00460 * 53.64491 * 11 2 1 14 14 C 1.54320 * 102.94261 * 206.42727 * 13 11 2 15 15 N 1.47023 * 107.27365 * 22.18967 * 14 13 11 16 16 C 1.34777 * 125.65374 * 181.09555 * 15 14 13 17 17 O 1.21543 * 120.00186 * 174.89111 * 16 15 14 18 18 C 1.47906 * 119.99632 * 354.88506 * 16 15 14 19 19 C 1.39612 * 121.00890 * 50.01595 * 18 16 15 20 20 C 1.39080 * 119.23266 * 179.97438 * 19 18 16 21 21 O 1.35729 * 119.26930 * 179.97438 * 20 19 18 22 22 N 1.31865 * 121.45388 * 359.97438 * 20 19 18 23 23 C 1.33072 * 121.83032 * 0.02562 * 22 20 19 24 24 N 1.35732 * 133.21014 * 180.02562 * 23 22 20 25 25 C 1.30200 * 109.68646 * 179.97438 * 24 23 22 26 26 N 1.35970 * 110.07479 * 359.97438 * 25 24 23 27 27 C 1.46499 * 126.36532 * 180.02562 * 26 25 24 28 28 C 1.37615 * 107.27254 * 359.74591 * 26 25 24 29 29 C 1.47427 * 108.69878 * 1.06345 * 15 14 13 30 30 H 1.08996 * 109.47028 * 92.14545 * 1 2 3 31 31 H 1.09005 * 109.46591 * 212.14647 * 1 2 3 32 32 H 1.09000 * 109.47228 * 332.13995 * 1 2 3 33 33 H 0.97005 * 119.99341 * 180.02562 * 6 5 3 34 34 H 1.09004 * 110.71864 * 324.78770 * 13 11 2 35 35 H 1.09002 * 110.71983 * 88.05952 * 13 11 2 36 36 H 1.09002 * 109.88366 * 262.77781 * 14 13 11 37 37 H 1.08998 * 110.01783 * 141.68144 * 14 13 11 38 38 H 1.07998 * 120.38008 * 0.02562 * 19 18 16 39 39 H 0.96705 * 113.99904 * 90.00682 * 21 20 19 40 40 H 1.08002 * 124.97008 * 180.02562 * 25 24 23 41 41 H 1.09001 * 109.47027 * 95.59756 * 27 26 25 42 42 H 1.09002 * 109.46969 * 215.59697 * 27 26 25 43 43 H 1.09000 * 109.47148 * 335.60188 * 27 26 25 44 44 H 1.09004 * 110.36724 * 217.02414 * 29 15 14 45 45 H 1.09007 * 110.36526 * 94.71130 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1429 1.2361 0.4211 5 6 1.5693 2.3224 -0.5463 6 7 0.4507 2.2248 -1.2329 7 14 2.3759 3.9902 -0.3069 8 1 3.3273 4.2441 -1.4184 9 1 1.3332 5.0474 -0.2967 10 1 3.1085 4.0049 0.9848 11 6 2.1976 -1.2687 -0.0006 12 1 3.2731 -1.0964 -0.0437 13 6 1.7321 -2.1792 -1.1675 14 6 2.0381 -3.5976 -0.6424 15 7 2.0994 -3.5164 0.8243 16 6 2.3658 -4.5418 1.6574 17 8 2.4825 -4.3410 2.8505 18 6 2.5161 -5.9115 1.1199 19 6 3.3575 -6.1706 0.0363 20 6 3.4714 -7.4727 -0.4390 21 8 4.2888 -7.7254 -1.4927 22 7 2.8028 -8.4671 0.1115 23 6 1.9874 -8.2770 1.1458 24 7 1.2043 -9.1101 1.8772 25 6 0.5854 -8.4323 2.8006 26 7 0.9295 -7.1190 2.7252 27 6 0.4436 -6.0426 3.5922 28 6 1.8238 -6.9898 1.6873 29 6 1.8218 -2.1273 1.2328 30 1 -0.3633 -0.0385 -1.0269 31 1 -0.3633 -0.8702 0.5468 32 1 -0.3634 0.9085 0.4802 33 1 0.0453 3.0190 -1.6150 34 1 0.6643 -2.0573 -1.3493 35 1 2.3046 -1.9706 -2.0713 36 1 2.9958 -3.9397 -1.0349 37 1 1.2477 -4.2853 -0.9429 38 1 3.9140 -5.3693 -0.4268 39 1 5.1973 -7.9427 -1.2425 40 1 -0.1003 -8.8519 3.5218 41 1 1.1568 -5.8765 4.3996 42 1 0.3349 -5.1279 3.0094 43 1 -0.5223 -6.3227 4.0125 44 1 2.4389 -1.8530 2.0884 45 1 0.7652 -2.0062 1.4718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971662202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:26 Heat of formation + Delta-G solvation = 64.918280 kcal Electronic energy + Delta-G solvation = -30584.986282 eV Core-core repulsion = 26412.725705 eV Total energy + Delta-G solvation = -4172.260577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.76812 -40.16223 -39.39030 -37.67160 -36.52241 -34.98078 -34.55021 -32.59865 -31.55007 -29.93802 -29.54390 -28.15956 -27.28870 -26.16068 -25.33834 -23.55610 -23.31876 -22.42477 -21.61930 -19.73745 -19.47360 -18.75354 -18.26079 -17.39578 -17.18294 -17.16082 -16.42550 -16.12550 -15.65815 -15.24079 -15.05843 -14.81815 -14.56440 -14.16088 -13.98035 -13.65888 -13.54313 -13.41317 -12.93257 -12.79295 -12.59881 -12.41878 -12.10924 -12.08752 -11.99277 -11.46179 -11.14223 -11.05216 -10.99154 -10.84682 -10.63790 -10.58044 -10.40491 -10.33814 -10.02624 -9.95163 -9.42441 -9.05201 -8.76224 -8.69043 -8.56949 -6.86967 -5.88503 -3.38060 0.17358 0.79589 2.07342 2.16778 2.55341 2.84055 2.98033 3.30141 3.37455 3.38969 3.43270 3.90608 4.01582 4.27460 4.37154 4.37618 4.57668 4.73950 4.84151 4.88789 4.96847 5.14794 5.22694 5.25752 5.34500 5.40400 5.43646 5.51813 5.61622 5.75956 5.79207 5.88452 5.95867 6.09063 6.23625 6.33180 6.50305 6.59087 6.67386 6.74886 7.07857 7.21513 7.33949 7.42660 7.56004 7.68716 7.68779 7.91658 8.27586 9.08704 9.69292 10.19469 11.17613 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002681 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.746701 B =10442.042162 C =11281.653277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.583 5.583 3 C -0.265 4.265 4 H 0.069 0.931 5 C 0.009 3.991 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.286 1.286 9 H -0.289 1.289 10 H -0.278 1.278 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.150 4.150 14 C 0.096 3.904 15 N -0.598 5.598 16 C 0.568 3.432 17 O -0.534 6.534 18 C -0.042 4.042 19 C -0.143 4.143 20 C 0.330 3.670 21 O -0.473 6.473 22 N -0.455 5.455 23 C 0.272 3.728 24 N -0.486 5.486 25 C 0.290 3.710 26 N -0.478 5.478 27 C 0.081 3.919 28 C 0.024 3.976 29 C 0.083 3.917 30 H 0.025 0.975 31 H -0.003 1.003 32 H 0.053 0.947 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.159 0.841 39 H 0.402 0.598 40 H 0.227 0.773 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -18.216 5.792 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.303 5.303 3 C -0.394 4.394 4 H 0.087 0.913 5 C -0.190 4.190 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.212 1.212 9 H -0.215 1.215 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.190 4.190 14 C -0.027 4.027 15 N -0.330 5.330 16 C 0.355 3.645 17 O -0.412 6.412 18 C -0.056 4.056 19 C -0.166 4.166 20 C 0.139 3.861 21 O -0.279 6.279 22 N -0.176 5.176 23 C 0.029 3.971 24 N -0.207 5.207 25 C 0.002 3.998 26 N -0.167 5.167 27 C -0.061 4.061 28 C -0.091 4.091 29 C -0.041 4.041 30 H 0.043 0.957 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.176 0.824 39 H 0.260 0.740 40 H 0.243 0.757 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.022 -19.438 5.655 20.270 hybrid contribution 0.666 2.398 0.605 2.561 sum 1.688 -17.040 6.260 18.232 Atomic orbital electron populations 1.20792 0.82541 0.96819 0.98307 1.43777 1.01776 0.99775 1.84948 1.19192 1.00879 0.86053 1.33320 0.91341 1.25128 0.97795 0.98953 0.97162 1.70039 1.20009 1.28265 1.36374 0.86231 0.78479 0.83583 0.78057 1.21248 1.21521 1.20377 1.21434 0.96622 0.85955 0.89751 0.90131 1.23228 1.03121 0.92010 1.00689 1.22295 1.01222 0.99899 0.79278 1.48439 1.67316 1.09585 1.07706 1.17641 0.77867 0.83233 0.85739 1.90799 1.51380 1.84344 1.14707 1.19098 0.98088 0.92316 0.96062 1.22167 1.00720 0.98423 0.95270 1.18482 0.93028 0.86755 0.87832 1.84855 1.24439 1.91165 1.27483 1.65843 1.07311 1.36435 1.07991 1.18885 0.97479 0.86778 0.93930 1.70378 1.11718 1.31130 1.07441 1.25682 0.97893 0.78735 0.97496 1.45194 1.35223 1.09883 1.26370 1.22232 1.00509 0.88825 0.94524 1.19432 0.98012 0.97371 0.94237 1.23127 1.01437 0.78539 1.00953 0.95685 0.98459 0.92825 0.93519 0.90382 0.90113 0.91254 0.91831 0.82395 0.73994 0.75692 0.89355 0.89572 0.89095 0.90506 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.61 7.72 59.85 0.46 4.07 16 2 N -0.58 -13.36 2.95 -171.03 -0.50 -13.87 16 3 C -0.27 -6.81 9.57 -15.06 -0.14 -6.96 16 4 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 5 C 0.01 0.24 5.11 -17.43 -0.09 0.15 16 6 N -0.90 -24.90 10.83 55.49 0.60 -24.30 16 7 Si 0.91 20.82 29.57 -169.99 -5.03 15.79 16 8 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 C 0.17 3.18 3.55 -65.78 -0.23 2.94 16 12 H 0.08 1.49 7.96 -51.93 -0.41 1.08 16 13 C -0.15 -2.34 6.51 -24.90 -0.16 -2.50 16 14 C 0.10 1.23 5.81 -3.07 -0.02 1.21 16 15 N -0.60 -8.63 3.33 -171.61 -0.57 -9.20 16 16 C 0.57 8.28 6.29 -12.30 -0.08 8.20 16 17 O -0.53 -8.86 14.80 5.33 0.08 -8.78 16 18 C -0.04 -0.55 5.38 -104.71 -0.56 -1.11 16 19 C -0.14 -1.62 8.56 -38.76 -0.33 -1.95 16 20 C 0.33 3.97 7.71 -17.22 -0.13 3.84 16 21 O -0.47 -4.54 13.55 -18.89 -0.26 -4.80 16 22 N -0.45 -6.63 10.41 -12.77 -0.13 -6.77 16 23 C 0.27 3.94 8.37 -156.98 -1.31 2.63 16 24 N -0.49 -6.38 11.27 -13.60 -0.15 -6.53 16 25 C 0.29 2.62 12.49 -89.77 -1.12 1.49 16 26 N -0.48 -5.08 3.19 -122.88 -0.39 -5.47 16 27 C 0.08 0.69 9.57 59.85 0.57 1.26 16 28 C 0.02 0.32 6.79 -83.66 -0.57 -0.24 16 29 C 0.08 1.38 6.51 -2.53 -0.02 1.36 16 30 H 0.02 0.60 7.54 -51.93 -0.39 0.21 16 31 H 0.00 -0.06 6.29 -51.93 -0.33 -0.38 16 32 H 0.05 1.33 7.04 -51.93 -0.37 0.97 16 33 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.08 1.31 7.01 -51.93 -0.36 0.95 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 0.75 6.06 -51.93 -0.31 0.44 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.16 1.48 6.24 -52.49 -0.33 1.15 16 39 H 0.40 1.74 9.06 45.56 0.41 2.16 16 40 H 0.23 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.09 0.79 7.92 -51.93 -0.41 0.38 16 42 H 0.09 0.93 6.34 -51.93 -0.33 0.61 16 43 H 0.09 0.43 8.13 -51.93 -0.42 0.01 16 44 H 0.08 1.34 7.99 -51.93 -0.41 0.93 16 45 H 0.07 1.24 6.26 -51.92 -0.33 0.91 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -34.28 365.49 -9.39 -43.67 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.81 Total: 0.36 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: -3.74 Total: 14.39 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -1.15 Total: -66.14 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.18 Total: -13.58 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.28 -9.39 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971662202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.589 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds