Wall clock time and date at job start Wed Apr 1 2020 03:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 119.99751 * 2 1 4 4 H 1.08000 * 119.99932 * 153.24103 * 3 2 1 5 5 C 1.38811 * 120.00097 * 332.97158 * 3 2 1 6 6 N 1.31619 * 119.99678 * 350.22231 * 5 3 2 7 7 Si 1.86797 * 119.99980 * 170.22199 * 5 3 2 8 8 H 1.48504 * 109.47182 * 89.99818 * 7 5 3 9 9 H 1.48493 * 109.47250 * 209.99786 * 7 5 3 10 10 H 1.48503 * 109.47138 * 330.00360 * 7 5 3 11 11 C 1.46504 * 120.00289 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88310 * 177.56867 * 11 2 1 13 13 C 1.55153 * 111.00460 * 53.64491 * 11 2 1 14 14 C 1.54320 * 102.94261 * 206.42727 * 13 11 2 15 15 N 1.47023 * 107.27365 * 22.18967 * 14 13 11 16 16 C 1.34777 * 125.65374 * 181.09555 * 15 14 13 17 17 O 1.21543 * 120.00186 * 174.89111 * 16 15 14 18 18 C 1.47906 * 119.99632 * 354.88506 * 16 15 14 19 19 C 1.39612 * 121.00890 * 50.01595 * 18 16 15 20 20 C 1.39080 * 119.23266 * 179.97438 * 19 18 16 21 21 O 1.35729 * 119.26930 * 179.97438 * 20 19 18 22 22 N 1.31865 * 121.45388 * 359.97438 * 20 19 18 23 23 C 1.33072 * 121.83032 * 0.02562 * 22 20 19 24 24 N 1.35732 * 133.21014 * 180.02562 * 23 22 20 25 25 C 1.30200 * 109.68646 * 179.97438 * 24 23 22 26 26 N 1.35970 * 110.07479 * 359.97438 * 25 24 23 27 27 C 1.46499 * 126.36532 * 180.02562 * 26 25 24 28 28 C 1.37615 * 107.27254 * 359.74591 * 26 25 24 29 29 C 1.47427 * 108.69878 * 1.06345 * 15 14 13 30 30 H 1.08996 * 109.47028 * 92.14545 * 1 2 3 31 31 H 1.09005 * 109.46591 * 212.14647 * 1 2 3 32 32 H 1.09000 * 109.47228 * 332.13995 * 1 2 3 33 33 H 0.97005 * 119.99341 * 180.02562 * 6 5 3 34 34 H 1.09004 * 110.71864 * 324.78770 * 13 11 2 35 35 H 1.09002 * 110.71983 * 88.05952 * 13 11 2 36 36 H 1.09002 * 109.88366 * 262.77781 * 14 13 11 37 37 H 1.08998 * 110.01783 * 141.68144 * 14 13 11 38 38 H 1.07998 * 120.38008 * 0.02562 * 19 18 16 39 39 H 0.96705 * 113.99904 * 90.00682 * 21 20 19 40 40 H 1.08002 * 124.97008 * 180.02562 * 25 24 23 41 41 H 1.09001 * 109.47027 * 95.59756 * 27 26 25 42 42 H 1.09002 * 109.46969 * 215.59697 * 27 26 25 43 43 H 1.09000 * 109.47148 * 335.60188 * 27 26 25 44 44 H 1.09004 * 110.36724 * 217.02414 * 29 15 14 45 45 H 1.09007 * 110.36526 * 94.71130 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1429 1.2361 0.4211 5 6 1.5693 2.3224 -0.5463 6 7 0.4507 2.2248 -1.2329 7 14 2.3759 3.9902 -0.3069 8 1 3.3273 4.2441 -1.4184 9 1 1.3332 5.0474 -0.2967 10 1 3.1085 4.0049 0.9848 11 6 2.1976 -1.2687 -0.0006 12 1 3.2731 -1.0964 -0.0437 13 6 1.7321 -2.1792 -1.1675 14 6 2.0381 -3.5976 -0.6424 15 7 2.0994 -3.5164 0.8243 16 6 2.3658 -4.5418 1.6574 17 8 2.4825 -4.3410 2.8505 18 6 2.5161 -5.9115 1.1199 19 6 3.3575 -6.1706 0.0363 20 6 3.4714 -7.4727 -0.4390 21 8 4.2888 -7.7254 -1.4927 22 7 2.8028 -8.4671 0.1115 23 6 1.9874 -8.2770 1.1458 24 7 1.2043 -9.1101 1.8772 25 6 0.5854 -8.4323 2.8006 26 7 0.9295 -7.1190 2.7252 27 6 0.4436 -6.0426 3.5922 28 6 1.8238 -6.9898 1.6873 29 6 1.8218 -2.1273 1.2328 30 1 -0.3633 -0.0385 -1.0269 31 1 -0.3633 -0.8702 0.5468 32 1 -0.3634 0.9085 0.4802 33 1 0.0453 3.0190 -1.6150 34 1 0.6643 -2.0573 -1.3493 35 1 2.3046 -1.9706 -2.0713 36 1 2.9958 -3.9397 -1.0349 37 1 1.2477 -4.2853 -0.9429 38 1 3.9140 -5.3693 -0.4268 39 1 5.1973 -7.9427 -1.2425 40 1 -0.1003 -8.8519 3.5218 41 1 1.1568 -5.8765 4.3996 42 1 0.3349 -5.1279 3.0094 43 1 -0.5223 -6.3227 4.0125 44 1 2.4389 -1.8530 2.0884 45 1 0.7652 -2.0062 1.4718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971662202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:25 Heat of formation + Delta-G solvation = 39.759903 kcal Electronic energy + Delta-G solvation = -30586.077231 eV Core-core repulsion = 26412.725705 eV Total energy + Delta-G solvation = -4173.351526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.61901 -41.30731 -40.28498 -39.02379 -37.33612 -36.61629 -35.42282 -33.79377 -33.03851 -31.35129 -30.40387 -29.50811 -28.08832 -28.02944 -26.46292 -24.91736 -24.21063 -23.80129 -22.56907 -21.00244 -20.64514 -19.71928 -19.11567 -18.95413 -18.31985 -18.17419 -17.64182 -17.23451 -16.75023 -16.40778 -16.17581 -16.00846 -15.58723 -15.31466 -15.11796 -15.03096 -14.62121 -14.47076 -14.38360 -14.20368 -13.90766 -13.63161 -13.22507 -12.97281 -12.92108 -12.86386 -12.82077 -12.50443 -12.40825 -12.17420 -12.10381 -12.03560 -11.90018 -11.81444 -11.55933 -11.45248 -10.63594 -10.37823 -9.98428 -9.78819 -9.60831 -8.74857 -7.86669 -5.37344 -0.73270 -0.08870 1.16893 1.41262 1.47829 1.49296 1.52380 1.58203 1.73363 2.18371 2.50209 2.53189 2.93881 3.24719 3.27831 3.36091 3.48889 3.62828 3.87315 3.88140 3.93718 3.98515 4.07275 4.19229 4.27499 4.31539 4.37506 4.46555 4.60777 4.62600 4.69476 4.74282 4.87340 4.94760 4.96403 5.06962 5.16261 5.19605 5.28923 5.38572 5.64033 5.69801 5.89338 6.26682 6.31439 6.33377 6.66143 6.75987 6.83565 7.13752 7.82265 8.27718 9.17699 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002681 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.746701 B =10442.042162 C =11281.653277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.599 5.599 3 C -0.269 4.269 4 H 0.070 0.930 5 C -0.043 4.043 6 N -0.933 5.933 7 Si 0.967 3.033 8 H -0.284 1.284 9 H -0.295 1.295 10 H -0.272 1.272 11 C 0.166 3.834 12 H 0.079 0.921 13 C -0.140 4.140 14 C 0.104 3.896 15 N -0.597 5.597 16 C 0.575 3.425 17 O -0.557 6.557 18 C -0.052 4.052 19 C -0.133 4.133 20 C 0.335 3.665 21 O -0.476 6.476 22 N -0.487 5.487 23 C 0.252 3.748 24 N -0.526 5.526 25 C 0.313 3.687 26 N -0.482 5.482 27 C 0.083 3.917 28 C 0.007 3.993 29 C 0.099 3.901 30 H 0.004 0.996 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.249 0.751 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.180 0.820 39 H 0.425 0.575 40 H 0.281 0.719 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.135 0.865 44 H 0.065 0.935 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -19.609 6.338 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.320 5.320 3 C -0.399 4.399 4 H 0.088 0.912 5 C -0.239 4.239 6 N -0.578 5.578 7 Si 0.795 3.205 8 H -0.210 1.210 9 H -0.221 1.221 10 H -0.197 1.197 11 C 0.057 3.943 12 H 0.097 0.903 13 C -0.180 4.180 14 C -0.018 4.018 15 N -0.329 5.329 16 C 0.363 3.637 17 O -0.437 6.437 18 C -0.066 4.066 19 C -0.156 4.156 20 C 0.144 3.856 21 O -0.286 6.286 22 N -0.209 5.209 23 C 0.009 3.991 24 N -0.248 5.248 25 C 0.026 3.974 26 N -0.170 5.170 27 C -0.058 4.058 28 C -0.108 4.108 29 C -0.025 4.025 30 H 0.022 0.978 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.197 0.803 39 H 0.286 0.714 40 H 0.296 0.704 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.153 0.847 44 H 0.084 0.916 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.491 -20.868 6.207 21.822 hybrid contribution 0.566 2.716 0.485 2.817 sum 2.057 -18.151 6.692 19.455 Atomic orbital electron populations 1.20491 0.82759 0.96473 0.96998 1.43915 1.01926 1.00770 1.85402 1.19498 1.00879 0.87333 1.32234 0.91185 1.25808 0.98539 1.01980 0.97592 1.70184 1.21355 1.28532 1.37770 0.85293 0.77379 0.79769 0.78082 1.21036 1.22143 1.19652 1.21554 0.96129 0.84858 0.91735 0.90308 1.23054 1.02245 0.92963 0.99762 1.22330 1.03227 0.98188 0.78046 1.48379 1.67455 1.08656 1.08417 1.17782 0.77006 0.83582 0.85299 1.90785 1.52337 1.84741 1.15796 1.19009 0.99271 0.91234 0.97051 1.22318 1.00005 0.98750 0.94505 1.18584 0.92787 0.86600 0.87625 1.84810 1.25845 1.91137 1.26804 1.65853 1.08346 1.37757 1.08911 1.19166 0.97984 0.87562 0.94345 1.70370 1.13181 1.32198 1.09044 1.26757 0.96431 0.77760 0.96441 1.45445 1.34690 1.10898 1.25930 1.22316 1.02459 0.87567 0.93426 1.19566 0.98920 0.97027 0.95318 1.22726 1.00632 0.79620 0.99551 0.97810 0.95642 0.95826 0.94142 0.91684 0.89536 0.88484 0.90535 0.80273 0.71367 0.70395 0.90034 0.92077 0.84695 0.91601 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.14 7.72 127.77 0.99 9.13 16 2 N -0.60 -27.58 2.95 -695.01 -2.05 -29.63 16 3 C -0.27 -13.90 9.57 84.03 0.80 -13.09 16 4 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 5 C -0.04 -2.30 5.11 84.86 0.43 -1.86 16 6 N -0.93 -52.50 10.83 21.65 0.23 -52.26 16 7 Si 0.97 43.12 29.57 68.60 2.03 45.15 16 8 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 C 0.17 5.98 3.55 46.38 0.16 6.14 16 12 H 0.08 2.85 7.96 -2.39 -0.02 2.83 16 13 C -0.14 -4.17 6.51 31.78 0.21 -3.96 16 14 C 0.10 2.41 5.81 86.73 0.50 2.92 16 15 N -0.60 -16.27 3.33 -815.12 -2.71 -18.98 16 16 C 0.58 16.00 6.29 86.80 0.55 16.54 16 17 O -0.56 -18.09 14.80 -3.85 -0.06 -18.14 16 18 C -0.05 -1.29 5.38 -19.92 -0.11 -1.39 16 19 C -0.13 -2.74 8.56 22.80 0.20 -2.55 16 20 C 0.34 7.53 7.71 84.89 0.65 8.19 16 21 O -0.48 -8.16 13.55 -90.51 -1.23 -9.38 16 22 N -0.49 -13.84 10.41 -307.36 -3.20 -17.04 16 23 C 0.25 7.10 8.37 134.30 1.12 8.22 16 24 N -0.53 -13.13 11.27 -196.93 -2.22 -15.35 16 25 C 0.31 4.81 12.49 180.05 2.25 7.06 16 26 N -0.48 -9.28 3.19 -542.68 -1.73 -11.01 16 27 C 0.08 1.25 9.57 127.77 1.22 2.47 16 28 C 0.01 0.18 6.79 39.27 0.27 0.45 16 29 C 0.10 3.21 6.51 86.85 0.57 3.77 16 30 H 0.00 0.18 7.54 -2.39 -0.02 0.16 16 31 H 0.03 1.00 6.29 -2.38 -0.01 0.98 16 32 H 0.02 1.19 7.04 -2.39 -0.02 1.17 16 33 H 0.25 13.72 8.31 -92.70 -0.77 12.95 16 34 H 0.06 2.12 7.01 -2.39 -0.02 2.11 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.10 1.76 6.06 -2.39 -0.01 1.74 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.18 2.77 6.24 -2.91 -0.02 2.75 16 39 H 0.42 2.74 9.06 -74.05 -0.67 2.07 16 40 H 0.28 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.08 1.35 7.92 -2.39 -0.02 1.33 16 42 H 0.06 1.26 6.34 -2.39 -0.02 1.24 16 43 H 0.13 0.77 8.13 -2.39 -0.02 0.75 16 44 H 0.07 2.28 7.99 -2.38 -0.02 2.26 16 45 H 0.06 2.18 6.26 -2.38 -0.01 2.17 16 Total: -1.00 -76.52 365.49 -0.73 -77.24 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.39 Total: 7.36 kcal Atomic # 6 Polarization: 32.22 SS G_CDS: 9.82 Total: 42.04 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -11.68 Total: -144.26 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.28 Total: -27.53 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -76.52 -0.73 -77.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971662202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.004 kcal (2) G-P(sol) polarization free energy of solvation -76.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds