Wall clock time and date at job start Wed Apr 1 2020 03:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35091 * 125.90656 * 2 1 4 4 C 1.35017 * 108.03103 * 180.02562 * 3 2 1 5 5 C 1.41042 * 107.84100 * 359.97438 * 4 3 2 6 6 C 1.47852 * 126.06221 * 179.73803 * 5 4 3 7 7 C 1.36732 * 126.81831 * 179.97438 * 6 5 4 8 8 C 1.41894 * 103.82196 * 179.97438 * 7 6 5 9 9 C 1.48338 * 126.84557 * 179.97438 * 8 7 6 10 10 O 1.21497 * 120.00262 * 6.94021 * 9 8 7 11 11 N 1.34780 * 120.00116 * 186.93922 * 9 8 7 12 12 C 1.46921 * 120.62968 * 6.57136 * 11 9 8 13 13 C 1.53621 * 108.54362 * 126.37128 * 12 11 9 14 14 C 1.53048 * 109.24234 * 54.85563 * 13 12 11 15 15 N 1.46503 * 109.45854 * 178.49139 * 14 13 12 16 16 C 1.36930 * 119.99976 * 275.06844 * 15 14 13 17 17 H 1.08003 * 120.00069 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99807 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00056 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00092 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47293 * 90.00629 * 20 18 16 22 22 H 1.48509 * 109.47299 * 210.00283 * 20 18 16 23 23 H 1.48501 * 109.47390 * 330.00462 * 20 18 16 24 24 C 1.53034 * 109.53580 * 298.51172 * 14 13 12 25 25 C 1.46924 * 120.62929 * 186.85566 * 11 9 8 26 26 N 1.31101 * 106.31158 * 0.02562 * 8 7 6 27 27 O 1.20881 * 111.76456 * 359.73189 * 26 8 7 28 28 N 1.31817 * 107.86968 * 0.02562 * 5 4 3 29 29 H 1.09000 * 109.47283 * 90.00152 * 1 2 3 30 30 H 1.09004 * 109.46890 * 209.99897 * 1 2 3 31 31 H 1.09003 * 109.47397 * 329.99738 * 1 2 3 32 32 H 1.07991 * 125.98811 * 0.02562 * 3 2 1 33 33 H 1.07998 * 126.07768 * 180.02562 * 4 3 2 34 34 H 1.08001 * 128.09282 * 359.97438 * 7 6 5 35 35 H 1.08999 * 109.59004 * 246.20531 * 12 11 9 36 36 H 1.08999 * 109.58532 * 6.62952 * 12 11 9 37 37 H 1.08997 * 109.63395 * 294.86615 * 13 12 11 38 38 H 1.08998 * 109.43332 * 174.72496 * 13 12 11 39 39 H 1.08998 * 109.44612 * 58.52520 * 14 13 12 40 40 H 0.97003 * 119.99455 * 95.06826 * 15 14 13 41 41 H 0.97002 * 120.00179 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.50146 * 301.41317 * 24 14 13 43 43 H 1.09000 * 109.52210 * 181.33001 * 24 14 13 44 44 H 1.08998 * 109.59052 * 353.37209 * 25 11 9 45 45 H 1.09002 * 109.59024 * 113.65611 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2572 1.0942 0.0000 4 6 3.5422 0.6798 -0.0006 5 6 3.5414 -0.7306 -0.0003 6 6 4.7360 -1.6017 -0.0063 7 6 4.7532 -2.9689 -0.0056 8 6 6.1352 -3.2905 -0.0135 9 6 6.7325 -4.6484 -0.0157 10 8 6.0204 -5.6251 -0.1377 11 7 8.0653 -4.7985 0.1177 12 6 8.9234 -3.6422 0.4093 13 6 9.7663 -3.9608 1.6534 14 6 10.5295 -5.2675 1.4246 15 7 11.3629 -5.5573 2.5941 16 6 12.6089 -4.9999 2.7019 17 1 12.9776 -4.3470 1.9246 18 6 13.3987 -5.2749 3.8098 19 7 14.5963 -4.7387 3.9137 20 14 12.7615 -6.4047 5.1539 21 1 13.1427 -7.8062 4.8446 22 1 13.3530 -6.0069 6.4567 23 1 11.2821 -6.2992 5.2292 24 6 9.5346 -6.4106 1.2116 25 6 8.6883 -6.1207 -0.0321 26 7 6.7790 -2.1485 -0.0172 27 8 6.0212 -1.2068 -0.0183 28 7 2.2865 -1.1344 -0.0002 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.9216 2.1206 0.0004 33 1 4.4154 1.3153 -0.0003 34 1 3.9117 -3.6459 -0.0004 35 1 9.5789 -3.4500 -0.4401 36 1 8.3036 -2.7662 0.6007 37 1 9.1142 -4.0674 2.5202 38 1 10.4751 -3.1514 1.8283 39 1 11.1628 -5.1683 0.5430 40 1 11.0319 -6.1440 3.2921 41 1 15.1484 -4.9311 4.6878 42 1 8.8845 -6.4942 2.0825 43 1 10.0779 -7.3452 1.0721 44 1 7.9133 -6.8806 -0.1320 45 1 9.3230 -6.1274 -0.9182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996628519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:56 Heat of formation + Delta-G solvation = 145.797395 kcal Electronic energy + Delta-G solvation = -29189.201505 eV Core-core repulsion = 25020.448110 eV Total energy + Delta-G solvation = -4168.753395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -45.29125 -41.62564 -40.06155 -37.51209 -34.78521 -34.66286 -34.11271 -32.22797 -31.77545 -30.75760 -30.62017 -29.80025 -27.29031 -25.92957 -24.21939 -23.70897 -22.94813 -22.44344 -21.54903 -21.31553 -20.21232 -19.08352 -18.09360 -18.03462 -17.51386 -17.27436 -16.68486 -15.99958 -15.93600 -15.16275 -15.01821 -14.83667 -14.30005 -14.24500 -14.08265 -13.85565 -13.58469 -13.44080 -13.35585 -13.15990 -13.00175 -12.99785 -12.53547 -12.27029 -12.08538 -11.49110 -11.29750 -11.02382 -10.99334 -10.88258 -10.84771 -10.68000 -10.50021 -10.29742 -10.09784 -9.88207 -9.58636 -9.46131 -8.95771 -8.90703 -8.63129 -7.27937 -5.77424 -3.13159 0.48376 1.13582 1.54104 1.65113 2.57028 2.58067 2.79776 3.04562 3.38004 3.41461 3.45744 3.69902 3.97543 4.03092 4.34175 4.57533 4.59084 4.63768 4.66486 4.77424 4.85514 5.08059 5.09474 5.17174 5.21996 5.28518 5.36838 5.42752 5.51050 5.60536 5.63355 5.71420 5.85181 5.90095 5.99134 6.16128 6.16746 6.27490 6.38068 6.38358 6.53340 6.80527 6.94829 6.99056 7.29346 7.70732 7.98297 8.00345 8.41632 9.19808 9.92639 10.12570 11.40750 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.002065 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.169225 B =13558.995166 C =14173.037928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.365 5.365 3 C 0.058 3.942 4 C -0.243 4.243 5 C 0.138 3.862 6 C 0.040 3.960 7 C -0.141 4.141 8 C -0.016 4.016 9 C 0.596 3.404 10 O -0.530 6.530 11 N -0.589 5.589 12 C 0.087 3.913 13 C -0.149 4.149 14 C 0.182 3.818 15 N -0.748 5.748 16 C -0.244 4.244 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.143 4.143 25 C 0.117 3.883 26 N -0.313 5.313 27 O 0.132 5.868 28 N -0.260 5.260 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.183 0.817 33 H 0.160 0.840 34 H 0.186 0.814 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.762 12.251 -10.881 33.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 C -0.087 4.087 4 C -0.273 4.273 5 C -0.026 4.026 6 C -0.025 4.025 7 C -0.166 4.166 8 C -0.173 4.173 9 C 0.381 3.619 10 O -0.406 6.406 11 N -0.322 5.322 12 C -0.036 4.036 13 C -0.190 4.190 14 C 0.072 3.928 15 N -0.390 5.390 16 C -0.373 4.373 17 H 0.109 0.891 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.181 4.181 25 C -0.005 4.005 26 N -0.015 5.015 27 O 0.058 5.942 28 N -0.086 5.086 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.200 0.800 33 H 0.178 0.822 34 H 0.203 0.797 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.504 11.117 -10.983 33.387 hybrid contribution -0.475 -0.253 1.174 1.292 sum -29.979 10.863 -9.809 33.362 Atomic orbital electron populations 1.21982 0.73289 1.05030 1.03883 1.48553 1.06938 1.03333 1.56068 1.22565 0.90709 0.93710 1.01683 1.21593 0.97835 0.93221 1.14606 1.18801 0.88740 0.91771 1.03275 1.20758 0.84302 0.91447 1.05973 1.22626 0.96661 0.93712 1.03574 1.23391 0.92478 0.94144 1.07327 1.16915 0.82148 0.85345 0.77473 1.90777 1.60489 1.38414 1.50907 1.48060 1.05490 1.10645 1.67985 1.22595 0.94043 0.88017 0.98903 1.22706 0.98765 1.01697 0.95796 1.20173 0.90306 0.90897 0.91377 1.42795 1.16549 1.57868 1.21768 1.19072 0.89738 1.23239 1.05283 0.89132 1.24671 0.96167 1.00112 0.98163 1.69703 1.09794 1.47875 1.30723 0.86559 0.78169 0.81278 0.82557 1.21081 1.21775 1.20391 1.22249 0.98147 1.00398 0.97354 1.21709 0.96905 0.83449 0.98458 1.74176 1.15635 0.95640 1.16034 1.84918 1.12691 1.30878 1.65748 1.77682 0.99822 1.07466 1.23650 0.90237 0.88877 0.88924 0.80004 0.82201 0.79683 0.90996 0.87381 0.92436 0.89986 0.92375 0.80652 0.93072 0.91813 0.90180 0.89000 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.22 11.46 59.84 0.69 0.91 16 2 N -0.37 -2.41 4.01 -68.21 -0.27 -2.68 16 3 C 0.06 0.30 11.46 -17.26 -0.20 0.11 16 4 C -0.24 -1.80 10.77 -39.66 -0.43 -2.23 16 5 C 0.14 1.38 7.11 -82.88 -0.59 0.80 16 6 C 0.04 0.45 7.35 -36.19 -0.27 0.18 16 7 C -0.14 -1.72 10.95 -38.73 -0.42 -2.15 16 8 C -0.02 -0.22 6.86 -82.62 -0.57 -0.79 16 9 C 0.60 9.36 7.71 -12.10 -0.09 9.27 16 10 O -0.53 -9.36 16.38 5.37 0.09 -9.27 16 11 N -0.59 -8.87 2.97 -173.43 -0.51 -9.39 16 12 C 0.09 1.29 6.16 -3.49 -0.02 1.27 16 13 C -0.15 -2.60 5.67 -26.38 -0.15 -2.75 16 14 C 0.18 3.44 2.73 -67.89 -0.19 3.26 16 15 N -0.75 -17.57 4.92 -53.38 -0.26 -17.83 16 16 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 17 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 20 Si 0.88 22.29 27.73 -169.99 -4.71 17.57 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 24 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 25 C 0.12 1.66 6.44 -3.71 -0.02 1.63 16 26 N -0.31 -4.15 8.62 33.35 0.29 -3.86 16 27 O 0.13 1.53 11.20 16.07 0.18 1.71 16 28 N -0.26 -2.62 12.60 33.36 0.42 -2.20 16 29 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 33 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.19 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.11 1.57 4.19 -57.34 -0.24 1.33 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.36 8.45 5.66 -40.82 -0.23 8.22 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -35.66 378.02 -6.90 -42.56 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.92 Total: 5.98 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.66 Total: 0.18 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: 0.43 Total: -64.44 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.27 Total: -7.56 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.66 -6.90 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996628519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.356 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds