Wall clock time and date at job start Wed Apr 1 2020 03:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35091 * 125.90656 * 2 1 4 4 C 1.35017 * 108.03103 * 180.02562 * 3 2 1 5 5 C 1.41042 * 107.84100 * 359.97438 * 4 3 2 6 6 C 1.47852 * 126.06221 * 179.73803 * 5 4 3 7 7 C 1.36732 * 126.81831 * 179.97438 * 6 5 4 8 8 C 1.41894 * 103.82196 * 179.97438 * 7 6 5 9 9 C 1.48338 * 126.84557 * 179.97438 * 8 7 6 10 10 O 1.21497 * 120.00262 * 6.94021 * 9 8 7 11 11 N 1.34780 * 120.00116 * 186.93922 * 9 8 7 12 12 C 1.46921 * 120.62968 * 6.57136 * 11 9 8 13 13 C 1.53621 * 108.54362 * 126.37128 * 12 11 9 14 14 C 1.53048 * 109.24234 * 54.85563 * 13 12 11 15 15 N 1.46503 * 109.45854 * 178.49139 * 14 13 12 16 16 C 1.36930 * 119.99976 * 275.06844 * 15 14 13 17 17 H 1.08003 * 120.00069 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99807 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00056 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00092 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47293 * 90.00629 * 20 18 16 22 22 H 1.48509 * 109.47299 * 210.00283 * 20 18 16 23 23 H 1.48501 * 109.47390 * 330.00462 * 20 18 16 24 24 C 1.53034 * 109.53580 * 298.51172 * 14 13 12 25 25 C 1.46924 * 120.62929 * 186.85566 * 11 9 8 26 26 N 1.31101 * 106.31158 * 0.02562 * 8 7 6 27 27 O 1.20881 * 111.76456 * 359.73189 * 26 8 7 28 28 N 1.31817 * 107.86968 * 0.02562 * 5 4 3 29 29 H 1.09000 * 109.47283 * 90.00152 * 1 2 3 30 30 H 1.09004 * 109.46890 * 209.99897 * 1 2 3 31 31 H 1.09003 * 109.47397 * 329.99738 * 1 2 3 32 32 H 1.07991 * 125.98811 * 0.02562 * 3 2 1 33 33 H 1.07998 * 126.07768 * 180.02562 * 4 3 2 34 34 H 1.08001 * 128.09282 * 359.97438 * 7 6 5 35 35 H 1.08999 * 109.59004 * 246.20531 * 12 11 9 36 36 H 1.08999 * 109.58532 * 6.62952 * 12 11 9 37 37 H 1.08997 * 109.63395 * 294.86615 * 13 12 11 38 38 H 1.08998 * 109.43332 * 174.72496 * 13 12 11 39 39 H 1.08998 * 109.44612 * 58.52520 * 14 13 12 40 40 H 0.97003 * 119.99455 * 95.06826 * 15 14 13 41 41 H 0.97002 * 120.00179 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.50146 * 301.41317 * 24 14 13 43 43 H 1.09000 * 109.52210 * 181.33001 * 24 14 13 44 44 H 1.08998 * 109.59052 * 353.37209 * 25 11 9 45 45 H 1.09002 * 109.59024 * 113.65611 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2572 1.0942 0.0000 4 6 3.5422 0.6798 -0.0006 5 6 3.5414 -0.7306 -0.0003 6 6 4.7360 -1.6017 -0.0063 7 6 4.7532 -2.9689 -0.0056 8 6 6.1352 -3.2905 -0.0135 9 6 6.7325 -4.6484 -0.0157 10 8 6.0204 -5.6251 -0.1377 11 7 8.0653 -4.7985 0.1177 12 6 8.9234 -3.6422 0.4093 13 6 9.7663 -3.9608 1.6534 14 6 10.5295 -5.2675 1.4246 15 7 11.3629 -5.5573 2.5941 16 6 12.6089 -4.9999 2.7019 17 1 12.9776 -4.3470 1.9246 18 6 13.3987 -5.2749 3.8098 19 7 14.5963 -4.7387 3.9137 20 14 12.7615 -6.4047 5.1539 21 1 13.1427 -7.8062 4.8446 22 1 13.3530 -6.0069 6.4567 23 1 11.2821 -6.2992 5.2292 24 6 9.5346 -6.4106 1.2116 25 6 8.6883 -6.1207 -0.0321 26 7 6.7790 -2.1485 -0.0172 27 8 6.0212 -1.2068 -0.0183 28 7 2.2865 -1.1344 -0.0002 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.9216 2.1206 0.0004 33 1 4.4154 1.3153 -0.0003 34 1 3.9117 -3.6459 -0.0004 35 1 9.5789 -3.4500 -0.4401 36 1 8.3036 -2.7662 0.6007 37 1 9.1142 -4.0674 2.5202 38 1 10.4751 -3.1514 1.8283 39 1 11.1628 -5.1683 0.5430 40 1 11.0319 -6.1440 3.2921 41 1 15.1484 -4.9311 4.6878 42 1 8.8845 -6.4942 2.0825 43 1 10.0779 -7.3452 1.0721 44 1 7.9133 -6.8806 -0.1320 45 1 9.3230 -6.1274 -0.9182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996628519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:52 Heat of formation + Delta-G solvation = 121.702176 kcal Electronic energy + Delta-G solvation = -29190.246352 eV Core-core repulsion = 25020.448110 eV Total energy + Delta-G solvation = -4169.798243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -46.27397 -42.13910 -41.31739 -38.93103 -36.40277 -35.45911 -35.04023 -33.92542 -32.74737 -31.97955 -31.57402 -31.16906 -27.73559 -27.31413 -25.64825 -24.70342 -24.19619 -23.78499 -22.65015 -21.84429 -21.58110 -20.27747 -19.46985 -19.06126 -18.79261 -18.35342 -17.39180 -17.15202 -16.75142 -16.46588 -16.34513 -15.94370 -15.78928 -15.22681 -15.03348 -14.96715 -14.80676 -14.65150 -14.57753 -14.26457 -13.86386 -13.73629 -13.61287 -13.46972 -13.25548 -12.96824 -12.90513 -12.51889 -12.24531 -12.16947 -11.95148 -11.86973 -11.79664 -11.70885 -11.54813 -11.42545 -11.39223 -10.92249 -10.09096 -9.89379 -9.52894 -9.32431 -8.02138 -5.35478 -0.38219 0.13266 1.03373 1.07519 1.37360 1.39432 1.46544 1.57641 1.82285 1.96128 1.99277 2.47745 2.61268 3.13058 3.28790 3.48488 3.57653 3.63843 3.69163 3.89887 4.01934 4.09065 4.10178 4.16897 4.29229 4.31511 4.48553 4.51087 4.61767 4.64985 4.69876 4.75089 4.76929 4.78861 4.84829 4.91384 4.93309 5.00757 5.18884 5.36540 5.37194 5.49732 5.77420 6.04198 6.06802 6.21812 6.43022 6.66027 6.87599 7.07250 7.83296 8.02264 9.19114 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.002065 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.169225 B =13558.995166 C =14173.037928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.362 5.362 3 C 0.075 3.925 4 C -0.261 4.261 5 C 0.110 3.890 6 C 0.057 3.943 7 C -0.153 4.153 8 C -0.031 4.031 9 C 0.596 3.404 10 O -0.553 6.553 11 N -0.591 5.591 12 C 0.098 3.902 13 C -0.139 4.139 14 C 0.175 3.825 15 N -0.751 5.751 16 C -0.226 4.226 17 H 0.061 0.939 18 C -0.064 4.064 19 N -0.982 5.982 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.298 1.298 23 H -0.258 1.258 24 C -0.131 4.131 25 C 0.120 3.880 26 N -0.323 5.323 27 O 0.142 5.858 28 N -0.297 5.297 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.229 0.771 33 H 0.173 0.827 34 H 0.190 0.810 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.363 0.637 41 H 0.257 0.743 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.772 13.189 -11.212 37.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.146 5.146 3 C -0.070 4.070 4 C -0.290 4.290 5 C -0.052 4.052 6 C -0.008 4.008 7 C -0.177 4.177 8 C -0.188 4.188 9 C 0.382 3.618 10 O -0.431 6.431 11 N -0.322 5.322 12 C -0.025 4.025 13 C -0.180 4.180 14 C 0.067 3.933 15 N -0.394 5.394 16 C -0.357 4.357 17 H 0.079 0.921 18 C -0.255 4.255 19 N -0.633 5.633 20 Si 0.780 3.220 21 H -0.204 1.204 22 H -0.225 1.225 23 H -0.183 1.183 24 C -0.170 4.170 25 C -0.002 4.002 26 N -0.024 5.024 27 O 0.066 5.934 28 N -0.125 5.125 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.145 0.855 32 H 0.246 0.754 33 H 0.190 0.810 34 H 0.207 0.793 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.196 0.804 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -32.558 12.034 -11.348 36.519 hybrid contribution 0.302 -0.375 1.175 1.270 sum -32.256 11.659 -10.172 35.776 Atomic orbital electron populations 1.22376 0.70957 1.06541 1.05211 1.48975 1.08267 1.02866 1.54478 1.23274 0.89700 0.95135 0.98900 1.21904 0.99573 0.92164 1.15395 1.18880 0.88321 0.92850 1.05167 1.20972 0.84389 0.91371 1.04111 1.22680 0.96124 0.94359 1.04574 1.23256 0.93211 0.93643 1.08643 1.17092 0.82069 0.85752 0.76859 1.90756 1.60935 1.39337 1.52040 1.48113 1.05447 1.10931 1.67754 1.22486 0.93848 0.88236 0.97899 1.22510 0.98368 1.00180 0.96941 1.20411 0.90553 0.92800 0.89503 1.42820 1.15628 1.57659 1.23257 1.19033 0.91111 1.21595 1.03944 0.92091 1.25451 0.96535 1.02503 1.01005 1.69877 1.11498 1.50256 1.31669 0.85452 0.78551 0.79115 0.78863 1.20386 1.22453 1.18252 1.22122 0.97393 0.99394 0.98101 1.21756 0.96970 0.83251 0.98222 1.74097 1.16135 0.95616 1.16552 1.84883 1.13006 1.30256 1.65219 1.77596 1.00263 1.09782 1.24902 0.88964 0.89331 0.85505 0.75417 0.80991 0.79310 0.89756 0.86780 0.93210 0.91797 0.92781 0.80356 0.93431 0.92245 0.89160 0.88474 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.15 11.46 127.77 1.46 1.61 16 2 N -0.36 -3.91 4.01 -369.71 -1.48 -5.40 16 3 C 0.08 0.54 11.46 83.45 0.96 1.50 16 4 C -0.26 -3.37 10.77 22.22 0.24 -3.13 16 5 C 0.11 2.13 7.11 42.38 0.30 2.43 16 6 C 0.06 1.25 7.35 24.46 0.18 1.43 16 7 C -0.15 -3.74 10.95 22.82 0.25 -3.49 16 8 C -0.03 -0.86 6.86 42.85 0.29 -0.57 16 9 C 0.60 18.41 7.71 86.93 0.67 19.08 16 10 O -0.55 -19.31 16.38 -3.71 -0.06 -19.37 16 11 N -0.59 -17.15 2.97 -820.92 -2.43 -19.58 16 12 C 0.10 2.82 6.16 86.51 0.53 3.36 16 13 C -0.14 -4.83 5.67 30.82 0.17 -4.66 16 14 C 0.18 6.51 2.73 45.02 0.12 6.63 16 15 N -0.75 -34.88 4.92 -322.81 -1.59 -36.47 16 16 C -0.23 -12.77 10.41 84.03 0.87 -11.89 16 17 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 18 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 19 N -0.98 -63.10 13.97 21.65 0.30 -62.79 16 20 Si 0.95 46.16 27.73 68.60 1.90 48.06 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 23 H -0.26 -11.48 6.52 99.48 0.65 -10.83 16 24 C -0.13 -3.97 5.55 30.67 0.17 -3.80 16 25 C 0.12 3.19 6.44 86.36 0.56 3.75 16 26 N -0.32 -8.42 8.62 -48.99 -0.42 -8.84 16 27 O 0.14 3.23 11.20 67.68 0.76 3.99 16 28 N -0.30 -5.75 12.60 -48.36 -0.61 -6.36 16 29 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.13 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.23 -0.69 8.06 -2.92 -0.02 -0.71 16 33 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.19 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 3.24 4.19 -13.07 -0.05 3.19 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 40 H 0.36 16.46 5.66 -92.71 -0.52 15.94 16 41 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.10 2.57 7.00 -2.39 -0.02 2.55 16 45 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -78.90 378.02 4.02 -74.88 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.41 Total: 22.93 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 7.25 Total: 8.96 kcal Atomic # 7 Polarization: -133.21 SS G_CDS: -6.24 Total: -139.44 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.70 Total: -15.38 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.06 kcal Total: -78.90 4.02 -74.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996628519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.583 kcal (2) G-P(sol) polarization free energy of solvation -78.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds