Wall clock time and date at job start Wed Apr 1 2020 04:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00061 * 2 1 4 4 O 1.21689 * 120.00267 * 183.38685 * 3 2 1 5 5 C 1.46660 * 119.99977 * 3.38413 * 3 2 1 6 6 C 1.36547 * 125.98628 * 173.22456 * 5 3 2 7 7 C 1.40366 * 106.70511 * 179.77278 * 6 5 3 8 8 C 1.35131 * 107.11606 * 0.40722 * 7 6 5 9 9 C 1.50706 * 125.61502 * 179.84883 * 8 7 6 10 10 N 1.46497 * 109.46875 * 89.72262 * 9 8 7 11 11 C 1.35316 * 125.86821 * 124.71466 * 10 9 8 12 12 C 1.35354 * 106.17440 * 179.90467 * 11 10 9 13 13 N 1.33773 * 106.49507 * 0.34978 * 12 11 10 14 14 N 1.28635 * 108.88632 * 359.77583 * 13 12 11 15 15 O 1.33927 * 108.76939 * 359.58716 * 8 7 6 16 16 C 1.46496 * 119.99985 * 179.97438 * 2 1 3 17 17 C 1.53784 * 113.61337 * 39.14056 * 16 2 1 18 18 C 1.53961 * 87.01673 * 220.04674 * 17 16 2 19 19 N 1.46499 * 113.73832 * 139.94225 * 18 17 16 20 20 C 1.36938 * 119.99790 * 107.40263 * 19 18 17 21 21 H 1.08004 * 120.00250 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00118 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00002 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99888 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47338 * 60.00728 * 24 22 20 26 26 H 1.48509 * 109.47005 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47349 * 300.00144 * 24 22 20 28 28 C 1.53783 * 87.11257 * 25.36403 * 18 17 16 29 29 H 1.09000 * 109.46726 * 84.01867 * 1 2 3 30 30 H 1.08990 * 109.47153 * 204.02002 * 1 2 3 31 31 H 1.09004 * 109.47139 * 324.01904 * 1 2 3 32 32 H 1.07991 * 126.64543 * 0.02562 * 6 5 3 33 33 H 1.08003 * 126.44522 * 180.25947 * 7 6 5 34 34 H 1.09004 * 109.46669 * 209.71818 * 9 8 7 35 35 H 1.08992 * 109.47316 * 329.71999 * 9 8 7 36 36 H 1.07997 * 126.91363 * 0.02562 * 11 10 9 37 37 H 1.07998 * 126.75192 * 180.13235 * 12 11 10 38 38 H 1.09004 * 112.84972 * 170.33404 * 16 2 1 39 39 H 1.09000 * 113.61350 * 334.56126 * 17 16 2 40 40 H 1.08996 * 113.61650 * 105.46874 * 17 16 2 41 41 H 1.08996 * 113.53709 * 270.80965 * 18 17 16 42 42 H 0.96998 * 120.00481 * 287.39864 * 19 18 17 43 43 H 0.97004 * 120.00687 * 179.97438 * 23 22 20 44 44 H 1.09000 * 113.60941 * 220.09038 * 28 18 17 45 45 H 1.08999 * 113.61362 * 89.18542 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3543 1.1682 -0.0623 5 6 1.4076 2.4362 0.0750 6 6 1.9635 3.6756 0.2137 7 6 0.9020 4.5938 0.2352 8 6 -0.2413 3.8828 0.1193 9 6 -1.6342 4.4578 0.0991 10 7 -2.0154 4.7658 -1.2814 11 6 -3.1175 4.3094 -1.9202 12 6 -3.0776 4.8381 -3.1656 13 7 -1.9636 5.5761 -3.2294 14 7 -1.3566 5.5125 -2.0970 15 8 0.0676 2.5835 0.0195 16 6 2.1975 -1.2687 0.0006 17 6 1.5591 -2.3490 -0.8884 18 6 1.9075 -3.3556 0.2233 19 7 0.8613 -4.3521 0.4655 20 6 1.0450 -5.6488 0.0653 21 1 1.9613 -5.9369 -0.4286 22 6 0.0540 -6.5932 0.2953 23 7 -1.0624 -6.2424 0.8976 24 14 0.3044 -8.3618 -0.2514 25 1 1.5002 -8.9246 0.4256 26 1 -0.8920 -9.1650 0.1076 27 1 0.5036 -8.4018 -1.7224 28 6 1.8674 -2.1701 1.2020 29 1 -0.3633 0.1071 -1.0221 30 1 -0.3633 -0.9386 0.4183 31 1 -0.3634 0.8316 0.6038 32 1 3.0161 3.9053 0.2880 33 1 0.9835 5.6667 0.3292 34 1 -2.3328 3.7322 0.5157 35 1 -1.6593 5.3700 0.6951 36 1 -3.8772 3.6563 -1.5169 37 1 -3.8008 4.6902 -3.9539 38 1 3.2667 -1.1402 -0.1681 39 1 0.4874 -2.2155 -1.0363 40 1 2.0976 -2.5223 -1.8200 41 1 2.8973 -3.7988 0.1146 42 1 0.0386 -4.0936 0.9095 43 1 -1.7551 -6.9022 1.0580 44 1 2.6546 -2.1992 1.9554 45 1 0.8802 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999162155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:56 Heat of formation + Delta-G solvation = 136.638841 kcal Electronic energy + Delta-G solvation = -29351.083041 eV Core-core repulsion = 25181.932501 eV Total energy + Delta-G solvation = -4169.150540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.68642 -43.09253 -40.08730 -38.08187 -35.70061 -34.99168 -33.50577 -33.11725 -31.43463 -31.14207 -30.03215 -27.78474 -27.14714 -25.23860 -24.79517 -23.54596 -23.03090 -22.52283 -21.96242 -21.24115 -20.09294 -18.97420 -18.34707 -17.76799 -17.17772 -17.15428 -16.70463 -16.53715 -15.82668 -15.25297 -15.10321 -14.81835 -14.63263 -14.54931 -14.13906 -14.02292 -13.61474 -13.54497 -13.21716 -13.05980 -12.86903 -12.79291 -12.15764 -12.07024 -12.00952 -11.86162 -11.31379 -11.30550 -10.94488 -10.74562 -10.66168 -10.55909 -10.42372 -10.37853 -10.23056 -10.01064 -9.76787 -9.65017 -9.13510 -8.95260 -8.57774 -7.05523 -5.85718 -3.14855 0.51733 1.15957 1.62400 2.08995 2.24372 2.28600 2.87712 2.97238 3.39597 3.44305 3.44993 3.78865 3.85259 4.14363 4.33111 4.44914 4.52920 4.53501 4.67093 4.85000 4.99683 5.03388 5.09915 5.20938 5.22504 5.25571 5.30856 5.38296 5.42910 5.51003 5.76909 5.77268 5.78397 5.86894 5.92320 6.04877 6.07202 6.20031 6.23425 6.26608 6.46875 6.49457 6.66343 6.94079 7.28676 7.63388 7.89443 8.12758 8.32607 9.44121 9.99761 10.34479 11.36531 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.002209 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.107541 B =12674.929642 C =14014.481571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.585 5.585 3 C 0.594 3.406 4 O -0.521 6.521 5 C -0.043 4.043 6 C -0.130 4.130 7 C -0.161 4.161 8 C -0.041 4.041 9 C 0.203 3.797 10 N -0.297 5.297 11 C -0.045 4.045 12 C -0.051 4.051 13 N -0.269 5.269 14 N -0.076 5.076 15 O -0.149 6.149 16 C 0.114 3.886 17 C -0.175 4.175 18 C 0.171 3.829 19 N -0.709 5.709 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.162 4.162 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.194 0.806 37 H 0.191 0.809 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.257 0.743 44 H 0.067 0.933 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 24.750 0.318 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.314 5.314 3 C 0.381 3.619 4 O -0.400 6.400 5 C -0.096 4.096 6 C -0.151 4.151 7 C -0.181 4.181 8 C -0.094 4.094 9 C 0.082 3.918 10 N -0.091 5.091 11 C -0.195 4.195 12 C -0.207 4.207 13 N -0.135 5.135 14 N -0.056 5.056 15 O -0.045 6.045 16 C 0.011 3.989 17 C -0.217 4.217 18 C 0.058 3.942 19 N -0.346 5.346 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.202 4.202 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.182 0.818 33 H 0.179 0.821 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.211 0.789 37 H 0.208 0.792 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.715 25.122 0.028 25.268 hybrid contribution -1.294 -1.475 0.072 1.964 sum -4.009 23.646 0.100 23.984 Atomic orbital electron populations 1.22004 0.78910 1.03852 1.02325 1.47819 1.07450 1.05671 1.70506 1.16717 0.86241 0.81281 0.77655 1.90872 1.11927 1.85898 1.51268 1.22359 0.79933 0.96747 1.10551 1.21993 1.01370 0.90234 1.01483 1.21666 0.90681 1.01202 1.04529 1.22189 0.96225 0.82213 1.08729 1.20310 0.90724 1.02724 0.78037 1.47560 1.16488 1.32377 1.12703 1.23796 0.94607 1.06017 0.95041 1.23689 0.98997 1.00526 0.97533 1.75160 1.06293 1.18907 1.13184 1.78367 1.19334 1.12080 0.95807 1.84279 1.24031 1.25986 1.70194 1.22773 0.97369 0.79603 0.99121 1.24386 1.01153 0.96493 0.99642 1.21361 0.93895 0.87214 0.91759 1.42335 1.17130 1.05573 1.69601 1.19269 1.01305 0.85467 1.31648 0.91000 1.24764 0.96501 0.98352 1.01145 1.69640 1.07283 1.33877 1.47298 0.86249 0.76878 0.84611 0.78337 1.21156 1.21668 1.21182 1.23947 1.01960 0.97038 0.97258 0.92313 0.89335 0.90461 0.81765 0.82138 0.85418 0.84843 0.78897 0.79166 0.86432 0.89839 0.91888 0.90090 0.78118 0.93367 0.91460 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 8.34 59.85 0.50 1.34 16 2 N -0.58 -8.20 3.08 -174.55 -0.54 -8.74 16 3 C 0.59 8.77 7.64 -12.86 -0.10 8.67 16 4 O -0.52 -9.05 16.34 5.20 0.08 -8.97 16 5 C -0.04 -0.53 6.77 -36.79 -0.25 -0.78 16 6 C -0.13 -1.39 10.63 -39.39 -0.42 -1.81 16 7 C -0.16 -1.35 10.77 -39.89 -0.43 -1.78 16 8 C -0.04 -0.33 6.68 -35.41 -0.24 -0.57 16 9 C 0.20 0.90 6.99 -5.19 -0.04 0.86 16 10 N -0.30 -2.26 3.43 -62.44 -0.21 -2.47 16 11 C -0.04 -0.27 11.57 -17.04 -0.20 -0.47 16 12 C -0.05 -0.41 12.05 -17.73 -0.21 -0.62 16 13 N -0.27 -3.17 12.41 30.24 0.38 -2.79 16 14 N -0.08 -0.85 12.92 60.35 0.78 -0.07 16 15 O -0.15 -1.54 7.29 4.99 0.04 -1.50 16 16 C 0.11 1.73 4.22 -67.12 -0.28 1.45 16 17 C -0.17 -2.91 7.31 -25.82 -0.19 -3.10 16 18 C 0.17 3.23 4.48 -67.02 -0.30 2.93 16 19 N -0.71 -16.96 5.41 -52.54 -0.28 -17.25 16 20 C -0.25 -6.61 9.97 -15.06 -0.15 -6.76 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 24 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 C -0.16 -2.59 7.34 -25.92 -0.19 -2.78 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.08 6.11 -51.93 -0.32 0.77 16 31 H 0.08 0.79 5.40 -51.93 -0.28 0.51 16 32 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.13 0.18 8.07 -51.93 -0.42 -0.23 16 35 H 0.13 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.19 0.40 8.06 -52.49 -0.42 -0.02 16 37 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 1.84 7.20 -51.93 -0.37 1.47 16 39 H 0.08 1.43 6.68 -51.93 -0.35 1.08 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 42 H 0.38 9.69 7.92 -40.82 -0.32 9.36 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.31 6.88 -51.93 -0.36 0.95 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -35.37 382.36 -6.65 -42.02 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.77 Total: 7.53 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.59 Total: -3.84 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.84 Total: -57.85 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.12 Total: -10.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.37 -6.65 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999162155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.660 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds