Wall clock time and date at job start Wed Apr 1 2020 04:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00061 * 2 1 4 4 O 1.21689 * 120.00267 * 183.38685 * 3 2 1 5 5 C 1.46660 * 119.99977 * 3.38413 * 3 2 1 6 6 C 1.36547 * 125.98628 * 173.22456 * 5 3 2 7 7 C 1.40366 * 106.70511 * 179.77278 * 6 5 3 8 8 C 1.35131 * 107.11606 * 0.40722 * 7 6 5 9 9 C 1.50706 * 125.61502 * 179.84883 * 8 7 6 10 10 N 1.46497 * 109.46875 * 89.72262 * 9 8 7 11 11 C 1.35316 * 125.86821 * 124.71466 * 10 9 8 12 12 C 1.35354 * 106.17440 * 179.90467 * 11 10 9 13 13 N 1.33773 * 106.49507 * 0.34978 * 12 11 10 14 14 N 1.28635 * 108.88632 * 359.77583 * 13 12 11 15 15 O 1.33927 * 108.76939 * 359.58716 * 8 7 6 16 16 C 1.46496 * 119.99985 * 179.97438 * 2 1 3 17 17 C 1.53784 * 113.61337 * 39.14056 * 16 2 1 18 18 C 1.53961 * 87.01673 * 220.04674 * 17 16 2 19 19 N 1.46499 * 113.73832 * 139.94225 * 18 17 16 20 20 C 1.36938 * 119.99790 * 107.40263 * 19 18 17 21 21 H 1.08004 * 120.00250 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00118 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00002 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99888 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47338 * 60.00728 * 24 22 20 26 26 H 1.48509 * 109.47005 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47349 * 300.00144 * 24 22 20 28 28 C 1.53783 * 87.11257 * 25.36403 * 18 17 16 29 29 H 1.09000 * 109.46726 * 84.01867 * 1 2 3 30 30 H 1.08990 * 109.47153 * 204.02002 * 1 2 3 31 31 H 1.09004 * 109.47139 * 324.01904 * 1 2 3 32 32 H 1.07991 * 126.64543 * 0.02562 * 6 5 3 33 33 H 1.08003 * 126.44522 * 180.25947 * 7 6 5 34 34 H 1.09004 * 109.46669 * 209.71818 * 9 8 7 35 35 H 1.08992 * 109.47316 * 329.71999 * 9 8 7 36 36 H 1.07997 * 126.91363 * 0.02562 * 11 10 9 37 37 H 1.07998 * 126.75192 * 180.13235 * 12 11 10 38 38 H 1.09004 * 112.84972 * 170.33404 * 16 2 1 39 39 H 1.09000 * 113.61350 * 334.56126 * 17 16 2 40 40 H 1.08996 * 113.61650 * 105.46874 * 17 16 2 41 41 H 1.08996 * 113.53709 * 270.80965 * 18 17 16 42 42 H 0.96998 * 120.00481 * 287.39864 * 19 18 17 43 43 H 0.97004 * 120.00687 * 179.97438 * 23 22 20 44 44 H 1.09000 * 113.60941 * 220.09038 * 28 18 17 45 45 H 1.08999 * 113.61362 * 89.18542 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3543 1.1682 -0.0623 5 6 1.4076 2.4362 0.0750 6 6 1.9635 3.6756 0.2137 7 6 0.9020 4.5938 0.2352 8 6 -0.2413 3.8828 0.1193 9 6 -1.6342 4.4578 0.0991 10 7 -2.0154 4.7658 -1.2814 11 6 -3.1175 4.3094 -1.9202 12 6 -3.0776 4.8381 -3.1656 13 7 -1.9636 5.5761 -3.2294 14 7 -1.3566 5.5125 -2.0970 15 8 0.0676 2.5835 0.0195 16 6 2.1975 -1.2687 0.0006 17 6 1.5591 -2.3490 -0.8884 18 6 1.9075 -3.3556 0.2233 19 7 0.8613 -4.3521 0.4655 20 6 1.0450 -5.6488 0.0653 21 1 1.9613 -5.9369 -0.4286 22 6 0.0540 -6.5932 0.2953 23 7 -1.0624 -6.2424 0.8976 24 14 0.3044 -8.3618 -0.2514 25 1 1.5002 -8.9246 0.4256 26 1 -0.8920 -9.1650 0.1076 27 1 0.5036 -8.4018 -1.7224 28 6 1.8674 -2.1701 1.2020 29 1 -0.3633 0.1071 -1.0221 30 1 -0.3633 -0.9386 0.4183 31 1 -0.3634 0.8316 0.6038 32 1 3.0161 3.9053 0.2880 33 1 0.9835 5.6667 0.3292 34 1 -2.3328 3.7322 0.5157 35 1 -1.6593 5.3700 0.6951 36 1 -3.8772 3.6563 -1.5169 37 1 -3.8008 4.6902 -3.9539 38 1 3.2667 -1.1402 -0.1681 39 1 0.4874 -2.2155 -1.0363 40 1 2.0976 -2.5223 -1.8200 41 1 2.8973 -3.7988 0.1146 42 1 0.0386 -4.0936 0.9095 43 1 -1.7551 -6.9022 1.0580 44 1 2.6546 -2.1992 1.9554 45 1 0.8802 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999162155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:55 Heat of formation + Delta-G solvation = 112.409184 kcal Electronic energy + Delta-G solvation = -29352.133718 eV Core-core repulsion = 25181.932501 eV Total energy + Delta-G solvation = -4170.201217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.28274 -43.81824 -41.29131 -39.40842 -36.44680 -36.14101 -34.95972 -34.18228 -32.17874 -31.95008 -31.61064 -28.51228 -28.21032 -26.65828 -26.31249 -24.86204 -23.63485 -23.28809 -22.86511 -22.06652 -21.12412 -20.37398 -19.06845 -18.97567 -18.65872 -18.02638 -17.66478 -17.44573 -16.61298 -16.35949 -16.20189 -16.02055 -15.71977 -15.49974 -15.08069 -14.98109 -14.59087 -14.52799 -14.41286 -14.23353 -14.12859 -13.54914 -13.37548 -13.28749 -13.14830 -12.92963 -12.76076 -12.60966 -12.30135 -12.16918 -12.06107 -11.90175 -11.75634 -11.56290 -11.33538 -11.21762 -11.16191 -10.87778 -10.31846 -9.99785 -9.65770 -9.00296 -7.95163 -5.23296 -0.28298 0.60150 0.96792 1.32514 1.48995 1.50733 1.56686 1.64701 1.75566 1.87072 1.96143 2.56946 3.09654 3.36122 3.51283 3.55195 3.71025 3.73114 3.78168 3.83654 3.89773 4.09938 4.18880 4.24166 4.25278 4.30916 4.35945 4.41846 4.50238 4.58418 4.67188 4.70876 4.77453 4.82256 4.85093 4.87369 5.04549 5.10003 5.21660 5.27682 5.32856 5.46418 5.55600 5.62069 5.71695 6.17131 6.26982 6.78560 7.33998 7.52381 8.08020 8.32376 9.27594 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.002209 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.107541 B =12674.929642 C =14014.481571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.587 5.587 3 C 0.592 3.408 4 O -0.558 6.558 5 C -0.076 4.076 6 C -0.127 4.127 7 C -0.170 4.170 8 C -0.025 4.025 9 C 0.196 3.804 10 N -0.295 5.295 11 C -0.027 4.027 12 C -0.071 4.071 13 N -0.315 5.315 14 N -0.116 5.116 15 O -0.152 6.152 16 C 0.128 3.872 17 C -0.163 4.163 18 C 0.155 3.845 19 N -0.721 5.721 20 C -0.246 4.246 21 H 0.076 0.924 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.970 3.030 25 H -0.279 1.279 26 H -0.296 1.296 27 H -0.280 1.280 28 C -0.147 4.147 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.165 0.835 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.238 0.762 37 H 0.213 0.787 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.075 0.925 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 25.788 0.766 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.316 5.316 3 C 0.381 3.619 4 O -0.439 6.439 5 C -0.128 4.128 6 C -0.148 4.148 7 C -0.189 4.189 8 C -0.078 4.078 9 C 0.077 3.923 10 N -0.089 5.089 11 C -0.177 4.177 12 C -0.228 4.228 13 N -0.181 5.181 14 N -0.096 5.096 15 O -0.048 6.048 16 C 0.024 3.976 17 C -0.205 4.205 18 C 0.044 3.956 19 N -0.358 5.358 20 C -0.378 4.378 21 H 0.094 0.906 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.799 3.201 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.206 1.206 28 C -0.187 4.187 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.183 0.817 33 H 0.201 0.799 34 H 0.185 0.815 35 H 0.183 0.817 36 H 0.255 0.745 37 H 0.229 0.771 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.002 26.203 0.466 26.511 hybrid contribution -0.918 -1.666 -0.068 1.904 sum -4.920 24.537 0.399 25.028 Atomic orbital electron populations 1.22094 0.77429 1.04343 1.02931 1.47824 1.08315 1.05066 1.70362 1.16988 0.86034 0.82079 0.76765 1.90837 1.13466 1.86624 1.53015 1.21865 0.80944 0.95917 1.14123 1.22238 1.02155 0.90385 0.99997 1.21957 0.90102 1.02116 1.04748 1.22929 0.97972 0.81164 1.05714 1.20915 0.89299 1.05050 0.77038 1.47780 1.16488 1.31409 1.13260 1.24492 0.94381 1.04769 0.94067 1.24255 0.98670 1.00491 0.99344 1.75090 1.08075 1.20732 1.14189 1.78292 1.20677 1.14171 0.96432 1.84227 1.22904 1.27338 1.70376 1.22460 0.97207 0.80087 0.97801 1.24168 1.01104 0.96058 0.99123 1.21630 0.92646 0.87259 0.94025 1.42455 1.17914 1.05642 1.69828 1.19645 1.01051 0.86784 1.30304 0.90616 1.25509 0.96620 1.02052 1.02256 1.69780 1.08060 1.34679 1.49181 0.85269 0.76534 0.80246 0.78047 1.20526 1.22191 1.20582 1.23777 1.02404 0.95327 0.97190 0.91934 0.89902 0.88570 0.81696 0.79926 0.81539 0.81713 0.74540 0.77051 0.86800 0.90135 0.91728 0.90182 0.79152 0.93962 0.90673 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.62 8.34 127.77 1.07 2.69 16 2 N -0.59 -16.05 3.08 -824.36 -2.54 -18.60 16 3 C 0.59 17.38 7.64 86.44 0.66 18.04 16 4 O -0.56 -19.68 16.34 -4.31 -0.07 -19.75 16 5 C -0.08 -1.80 6.77 24.07 0.16 -1.64 16 6 C -0.13 -2.60 10.63 22.39 0.24 -2.37 16 7 C -0.17 -2.50 10.77 22.07 0.24 -2.26 16 8 C -0.03 -0.33 6.68 24.97 0.17 -0.17 16 9 C 0.20 0.91 6.99 85.64 0.60 1.50 16 10 N -0.29 -3.57 3.43 -351.47 -1.21 -4.78 16 11 C -0.03 -0.23 11.57 83.49 0.97 0.73 16 12 C -0.07 -1.00 12.05 83.73 1.01 0.01 16 13 N -0.31 -7.24 12.41 -58.25 -0.72 -7.96 16 14 N -0.12 -2.45 12.92 37.02 0.48 -1.97 16 15 O -0.15 -2.81 7.29 -5.07 -0.04 -2.85 16 16 C 0.13 3.82 4.22 45.52 0.19 4.01 16 17 C -0.16 -5.36 7.31 31.18 0.23 -5.13 16 18 C 0.16 5.83 4.48 45.58 0.20 6.03 16 19 N -0.72 -34.63 5.41 -320.15 -1.73 -36.36 16 20 C -0.25 -13.23 9.97 84.03 0.84 -12.39 16 21 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 23 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 24 Si 0.97 45.05 29.55 68.60 2.03 47.07 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 C -0.15 -4.61 7.34 31.12 0.23 -4.38 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.93 6.11 -2.39 -0.01 1.92 16 31 H 0.10 1.75 5.40 -2.38 -0.01 1.74 16 32 H 0.17 3.22 8.06 -2.92 -0.02 3.20 16 33 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.17 -0.48 8.07 -2.39 -0.02 -0.50 16 35 H 0.17 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.24 -0.31 8.06 -2.91 -0.02 -0.33 16 37 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.11 3.55 7.20 -2.39 -0.02 3.53 16 39 H 0.08 2.72 6.68 -2.39 -0.02 2.70 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 42 H 0.38 19.14 7.92 -92.71 -0.73 18.40 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.08 2.63 6.88 -2.39 -0.02 2.61 16 Total: -1.00 -79.11 382.36 4.05 -75.06 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.31 Total: 25.76 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 7.26 Total: 1.14 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.44 Total: -126.45 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.11 Total: -22.60 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -79.11 4.05 -75.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999162155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.471 kcal (2) G-P(sol) polarization free energy of solvation -79.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds