Wall clock time and date at job start Wed Apr 1 2020 04:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99805 * 2 1 4 4 O 1.21283 * 119.99435 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00301 * 359.97438 * 3 2 1 6 6 N 1.46495 * 109.47024 * 180.02562 * 5 3 2 7 7 N 1.40164 * 126.21106 * 269.99552 * 6 5 3 8 8 C 1.31268 * 107.88472 * 180.02562 * 7 6 5 9 9 C 1.41793 * 132.00433 * 179.97438 * 8 7 6 10 10 C 1.35525 * 119.32384 * 179.97438 * 9 8 7 11 11 C 1.40999 * 119.86012 * 0.02562 * 10 9 8 12 12 C 1.34455 * 120.59926 * 0.02562 * 11 10 9 13 13 N 1.37469 * 120.68014 * 359.96456 * 12 11 10 14 14 C 1.34824 * 131.80284 * 180.02562 * 13 12 11 15 15 O 1.21894 * 126.05860 * 0.05681 * 14 13 12 16 16 C 1.46494 * 120.00086 * 179.97438 * 2 1 3 17 17 C 1.53792 * 113.61436 * 37.50395 * 16 2 1 18 18 C 1.53777 * 87.08290 * 220.01648 * 17 16 2 19 19 N 1.46499 * 113.68715 * 139.98873 * 18 17 16 20 20 C 1.36942 * 119.99940 * 107.46576 * 19 18 17 21 21 H 1.08004 * 119.99279 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00478 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99342 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00211 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46858 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46799 * 119.99978 * 24 22 20 27 27 H 1.48500 * 109.47140 * 240.00118 * 24 22 20 28 28 C 1.53784 * 113.61896 * 300.00847 * 16 2 1 29 29 H 1.09008 * 109.46238 * 90.00518 * 1 2 3 30 30 H 1.08994 * 109.47422 * 210.00204 * 1 2 3 31 31 H 1.08997 * 109.47196 * 330.01097 * 1 2 3 32 32 H 1.08997 * 109.46846 * 60.00026 * 5 3 2 33 33 H 1.09005 * 109.46751 * 300.00279 * 5 3 2 34 34 H 1.08000 * 120.34121 * 359.97438 * 9 8 7 35 35 H 1.08002 * 120.07130 * 179.72364 * 10 9 8 36 36 H 1.07996 * 119.69910 * 179.97438 * 11 10 9 37 37 H 1.07997 * 119.65779 * 180.02562 * 12 11 10 38 38 H 1.08996 * 112.85314 * 168.80715 * 16 2 1 39 39 H 1.08999 * 113.60996 * 334.57124 * 17 16 2 40 40 H 1.08995 * 113.61115 * 105.46857 * 17 16 2 41 41 H 1.08999 * 113.61755 * 270.88523 * 18 17 16 42 42 H 0.97001 * 120.00698 * 287.46428 * 19 18 17 43 43 H 0.97006 * 119.99184 * 180.02562 * 23 22 20 44 44 H 1.08998 * 113.61857 * 254.52878 * 28 16 2 45 45 H 1.09004 * 113.61221 * 25.43119 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3374 3.5858 -0.0011 7 7 2.8754 4.2157 1.1295 8 6 3.6848 5.1630 0.7164 9 6 4.4849 6.1002 1.4178 10 6 5.2398 6.9827 0.7193 11 6 5.2218 6.9604 -0.6904 12 6 4.4607 6.0704 -1.3511 13 7 3.6861 5.1646 -0.6661 14 6 2.8545 4.1915 -1.0897 15 8 2.6142 3.9082 -2.2506 16 6 2.1975 -1.2687 0.0006 17 6 1.5374 -2.3615 -0.8569 18 6 1.9129 -3.3525 0.2575 19 7 0.8728 -4.3455 0.5371 20 6 1.0474 -5.6474 0.1499 21 1 1.9517 -5.9419 -0.3619 22 6 0.0622 -6.5886 0.4152 23 7 -1.0401 -6.2295 1.0385 24 14 0.3007 -8.3646 -0.1123 25 1 1.6149 -8.5078 -0.7888 26 1 0.2610 -9.2454 1.0826 27 1 -0.7839 -8.7526 -1.0495 28 6 1.8953 -2.1541 1.2211 29 1 -0.3632 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5136 32 1 0.7584 2.5302 0.8891 33 1 0.7590 2.5298 -0.8909 34 1 4.4926 6.1108 2.4977 35 1 5.8503 7.7047 1.2413 36 1 5.8241 7.6651 -1.2444 37 1 4.4587 6.0666 -2.4311 38 1 3.2625 -1.1427 -0.1945 39 1 0.4625 -2.2298 -0.9802 40 1 2.0529 -2.5481 -1.7989 41 1 2.9001 -3.7972 0.1320 42 1 0.0604 -4.0810 0.9964 43 1 -1.7284 -6.8873 1.2242 44 1 2.6996 -2.1733 1.9565 45 1 0.9181 -1.9658 1.6659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999203813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:07 Heat of formation + Delta-G solvation = 98.073305 kcal Electronic energy + Delta-G solvation = -29356.286016 eV Core-core repulsion = 25185.463149 eV Total energy + Delta-G solvation = -4170.822867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.31508 -40.26186 -38.80607 -37.97388 -37.28600 -34.87963 -34.24362 -33.25178 -32.79675 -30.15080 -29.60227 -28.42819 -27.06225 -25.21027 -24.99076 -24.12525 -23.46295 -22.64824 -21.89535 -19.64102 -18.85566 -18.83250 -17.92877 -17.65040 -17.13791 -16.98279 -16.70723 -16.19364 -15.80060 -15.62147 -15.40336 -14.95214 -14.61370 -14.42706 -13.90667 -13.57068 -13.55159 -13.19669 -13.04431 -12.87478 -12.56340 -12.47376 -12.44420 -12.23874 -12.08036 -12.01388 -11.81248 -11.26890 -11.03510 -10.92870 -10.68170 -10.61915 -10.51333 -10.33786 -10.24002 -9.98966 -9.69144 -9.46005 -8.92357 -8.51515 -8.05604 -7.01086 -5.82469 -3.11251 0.12597 1.12212 1.16668 2.16837 2.46762 2.55387 2.93988 3.04739 3.40893 3.47249 3.49080 3.64874 4.17434 4.27621 4.29094 4.50341 4.56529 4.63262 4.67948 4.75683 5.02456 5.08113 5.11878 5.16223 5.35213 5.36945 5.41922 5.49843 5.50047 5.60653 5.69000 5.73032 5.83777 5.87649 5.93220 6.12258 6.20794 6.26308 6.31960 6.38783 6.54987 6.75227 6.99554 7.13935 7.39546 7.55799 7.67713 8.07150 8.36068 9.47643 10.03847 10.38661 11.39937 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.033792 B = 0.001827 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.394834 B =15318.975066 C =15358.933990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.594 5.594 3 C 0.496 3.504 4 O -0.531 6.531 5 C 0.142 3.858 6 N -0.417 5.417 7 N -0.273 5.273 8 C 0.293 3.707 9 C -0.119 4.119 10 C -0.046 4.046 11 C -0.186 4.186 12 C 0.131 3.869 13 N -0.480 5.480 14 C 0.652 3.348 15 O -0.537 6.537 16 C 0.117 3.883 17 C -0.174 4.174 18 C 0.170 3.830 19 N -0.709 5.709 20 C -0.244 4.244 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.162 4.162 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.169 0.831 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.064 0.936 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.452 31.396 -0.440 32.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.326 5.326 3 C 0.282 3.718 4 O -0.407 6.407 5 C 0.018 3.982 6 N -0.235 5.235 7 N -0.098 5.098 8 C 0.027 3.973 9 C -0.140 4.140 10 C -0.071 4.071 11 C -0.209 4.209 12 C 0.012 3.988 13 N -0.195 5.195 14 C 0.353 3.647 15 O -0.409 6.409 16 C 0.014 3.986 17 C -0.216 4.216 18 C 0.057 3.943 19 N -0.347 5.347 20 C -0.375 4.375 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.202 4.202 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.176 0.824 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.187 0.813 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.332 30.240 -0.562 31.372 hybrid contribution -0.054 -0.658 -0.752 1.000 sum 8.278 29.583 -1.314 30.747 Atomic orbital electron populations 1.21907 0.79253 1.03792 1.02498 1.47840 1.07075 1.05606 1.72096 1.20739 0.88498 0.85470 0.77125 1.90718 1.13672 1.87005 1.49336 1.21440 0.88717 0.81131 1.06947 1.48171 1.41627 1.30879 1.02780 1.77781 1.15113 1.09109 1.07825 1.21537 0.97834 0.96886 0.81060 1.20276 0.97974 0.94850 1.00934 1.21192 0.95613 0.96489 0.93791 1.20792 1.03303 1.01811 0.94955 1.21714 0.90373 0.87830 0.98872 1.43476 1.37776 1.29598 1.08698 1.16412 0.81444 0.80976 0.85914 1.91142 1.65622 1.68743 1.15350 1.22647 0.97222 0.79955 0.98801 1.24329 1.01089 0.96453 0.99690 1.21333 0.93783 0.87285 0.91912 1.42353 1.18541 1.05201 1.68613 1.19366 1.02144 0.85182 1.30784 0.90936 1.24766 0.96665 0.98316 1.01142 1.69670 1.08315 1.33552 1.46510 0.86104 0.77298 0.84986 0.77726 1.20492 1.21834 1.21839 1.23929 1.01889 0.97173 0.97192 0.91904 0.89446 0.91312 0.85236 0.85468 0.82436 0.83385 0.82710 0.81349 0.86949 0.89745 0.92092 0.90263 0.78106 0.93503 0.91719 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 8.84 59.85 0.53 1.24 16 2 N -0.59 -8.21 3.08 -173.00 -0.53 -8.74 16 3 C 0.50 7.43 7.74 -10.99 -0.09 7.34 16 4 O -0.53 -10.19 15.91 5.55 0.09 -10.11 16 5 C 0.14 1.63 5.40 -5.20 -0.03 1.60 16 6 N -0.42 -5.73 3.11 -66.31 -0.21 -5.94 16 7 N -0.27 -3.56 12.62 31.35 0.40 -3.16 16 8 C 0.29 3.15 7.87 -155.68 -1.23 1.92 16 9 C -0.12 -0.76 10.12 -39.19 -0.40 -1.16 16 10 C -0.05 -0.18 10.06 -39.51 -0.40 -0.58 16 11 C -0.19 -0.79 9.97 -39.87 -0.40 -1.19 16 12 C 0.13 0.96 10.90 -16.36 -0.18 0.78 16 13 N -0.48 -5.47 2.93 -66.47 -0.19 -5.66 16 14 C 0.65 9.51 8.70 -86.78 -0.75 8.75 16 15 O -0.54 -9.11 17.86 5.01 0.09 -9.02 16 16 C 0.12 1.86 4.21 -67.11 -0.28 1.57 16 17 C -0.17 -2.98 7.31 -25.91 -0.19 -3.17 16 18 C 0.17 3.33 4.48 -67.12 -0.30 3.03 16 19 N -0.71 -17.36 5.40 -52.64 -0.28 -17.64 16 20 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 24 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 C -0.16 -2.70 7.37 -25.91 -0.19 -2.89 16 29 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.09 1.00 6.34 -51.93 -0.33 0.67 16 31 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 32 H 0.13 1.07 7.40 -51.93 -0.38 0.69 16 33 H 0.13 1.21 8.06 -51.93 -0.42 0.79 16 34 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.15 0.09 8.06 -52.49 -0.42 -0.33 16 36 H 0.16 0.17 8.06 -52.49 -0.42 -0.26 16 37 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.11 1.93 7.23 -51.93 -0.38 1.55 16 39 H 0.08 1.46 6.72 -51.93 -0.35 1.11 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 42 H 0.38 9.88 7.92 -40.82 -0.32 9.56 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.35 6.90 -51.93 -0.36 1.00 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -38.16 381.19 -9.14 -47.30 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.80 Total: 6.99 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -4.14 Total: 9.96 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -0.10 Total: -68.08 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.18 Total: -19.13 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.16 -9.14 -47.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999203813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.376 kcal (2) G-P(sol) polarization free energy of solvation -38.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds