Wall clock time and date at job start Wed Apr 1 2020 03:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35093 * 125.91151 * 2 1 4 4 C 1.35008 * 108.03345 * 179.70376 * 3 2 1 5 5 C 1.41039 * 107.84295 * 0.42727 * 4 3 2 6 6 C 1.47856 * 126.06216 * 179.83185 * 5 4 3 7 7 C 1.36730 * 126.81551 * 180.02562 * 6 5 4 8 8 C 1.41891 * 103.82014 * 180.11730 * 7 6 5 9 9 C 1.48345 * 126.84459 * 179.89363 * 8 7 6 10 10 O 1.21485 * 120.00149 * 353.04454 * 9 8 7 11 11 N 1.34776 * 119.99789 * 173.04644 * 9 8 7 12 12 C 1.46927 * 120.63326 * 353.16072 * 11 9 8 13 13 C 1.53192 * 108.77883 * 233.63595 * 12 11 9 14 14 C 1.53046 * 109.30879 * 305.36602 * 13 12 11 15 15 C 1.53035 * 109.54253 * 61.36493 * 14 13 12 16 16 H 1.09002 * 109.49547 * 58.58337 * 15 14 13 17 17 N 1.46495 * 109.52774 * 178.66565 * 15 14 13 18 18 C 1.36940 * 120.00185 * 204.91783 * 17 15 14 19 19 H 1.07995 * 120.00082 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99793 * 179.97438 * 18 17 15 21 21 N 1.31626 * 120.00239 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99946 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47036 * 60.00348 * 22 20 18 24 24 H 1.48502 * 109.46981 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47038 * 300.00325 * 22 20 18 26 26 C 1.46924 * 120.63211 * 173.19120 * 11 9 8 27 27 N 1.31098 * 106.31203 * 359.62236 * 8 7 6 28 28 O 1.20880 * 111.76420 * 0.24732 * 27 8 7 29 29 N 1.31815 * 107.87055 * 359.56768 * 5 4 3 30 30 H 1.09000 * 109.47418 * 269.99890 * 1 2 3 31 31 H 1.09004 * 109.47384 * 30.00743 * 1 2 3 32 32 H 1.09004 * 109.46913 * 149.99855 * 1 2 3 33 33 H 1.08001 * 125.97996 * 359.97438 * 3 2 1 34 34 H 1.08004 * 126.07478 * 180.28266 * 4 3 2 35 35 H 1.08002 * 128.09403 * 359.97438 * 7 6 5 36 36 H 1.08998 * 109.58367 * 353.42074 * 12 11 9 37 37 H 1.08995 * 109.58584 * 113.84754 * 12 11 9 38 38 H 1.08994 * 109.49825 * 65.30953 * 13 12 11 39 39 H 1.08999 * 109.49941 * 185.38532 * 13 12 11 40 40 H 1.09005 * 109.46126 * 301.34003 * 14 13 12 41 41 H 1.08997 * 109.45786 * 181.38867 * 14 13 12 42 42 H 0.97005 * 119.99569 * 24.92150 * 17 15 14 43 43 H 0.97001 * 119.99757 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.58284 * 6.57571 * 26 11 9 45 45 H 1.09005 * 109.58451 * 246.15716 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2573 1.0942 0.0000 4 6 3.5422 0.6797 0.0066 5 6 3.5414 -0.7307 0.0009 6 6 4.7361 -1.6018 0.0016 7 6 4.7533 -2.9689 -0.0044 8 6 6.1352 -3.2906 0.0023 9 6 6.7325 -4.6485 0.0019 10 8 6.0205 -5.6253 0.1229 11 7 8.0652 -4.7984 -0.1326 12 6 8.9225 -3.6425 -0.4288 13 6 9.7643 -3.9579 -1.6692 14 6 10.5275 -5.2652 -1.4438 15 6 9.5327 -6.4086 -1.2317 16 1 8.8815 -6.4904 -2.1019 17 7 10.2630 -7.6652 -1.0477 18 6 9.6591 -8.8579 -1.3445 19 1 8.6447 -8.8722 -1.7145 20 6 10.3513 -10.0484 -1.1706 21 7 11.5880 -10.0310 -0.7201 22 14 9.5279 -11.6754 -1.5761 23 1 9.1419 -11.6910 -3.0100 24 1 10.4720 -12.7891 -1.3050 25 1 8.3150 -11.8394 -0.7351 26 6 8.6882 -6.1209 0.0136 27 7 6.7791 -2.1486 0.0028 28 8 6.0213 -1.2068 0.0025 29 7 2.2866 -1.1345 0.0006 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8899 -0.5140 32 1 -0.3633 -0.8900 -0.5139 33 1 1.9216 2.1207 -0.0004 34 1 4.4154 1.3153 0.0127 35 1 3.9117 -3.6459 -0.0102 36 1 8.3020 -2.7672 -0.6212 37 1 9.5794 -3.4481 0.4189 38 1 9.1109 -4.0628 -2.5352 39 1 10.4726 -3.1480 -1.8437 40 1 11.1622 -5.1680 -0.5630 41 1 11.1463 -5.4792 -2.3152 42 1 11.1743 -7.6523 -0.7156 43 1 12.0715 -10.8630 -0.5983 44 1 7.9132 -6.8809 0.1131 45 1 9.3261 -6.1286 0.8975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999250405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:17 Heat of formation + Delta-G solvation = 118.052564 kcal Electronic energy + Delta-G solvation = -29233.487152 eV Core-core repulsion = 25063.530650 eV Total energy + Delta-G solvation = -4169.956502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.28312 -42.12828 -41.30371 -38.84955 -36.38112 -35.43404 -35.00102 -33.89411 -32.84152 -32.58621 -31.16013 -30.11447 -27.73432 -27.41636 -25.93884 -24.99904 -24.43658 -23.33224 -22.80916 -21.83224 -21.45034 -20.05853 -19.17804 -19.06918 -18.77740 -18.35232 -17.41176 -17.18567 -16.73514 -16.42123 -16.31298 -15.84427 -15.61302 -15.43327 -15.29251 -15.01557 -14.90636 -14.63642 -14.20868 -14.08477 -13.91273 -13.73523 -13.65668 -13.28662 -13.21024 -12.92754 -12.87343 -12.55528 -12.26342 -11.97618 -11.95810 -11.85011 -11.76331 -11.69835 -11.55010 -11.41954 -11.27935 -11.09184 -10.08489 -9.91829 -9.51627 -9.06545 -7.99813 -5.29652 -0.38646 0.12619 1.05068 1.07012 1.43388 1.46377 1.52427 1.57819 1.82575 1.97002 1.99338 2.51912 2.60630 3.15259 3.32584 3.57705 3.63495 3.69048 3.77264 3.95045 3.98889 4.09552 4.16152 4.21659 4.29144 4.32036 4.48524 4.59495 4.63935 4.64288 4.64992 4.75409 4.79734 4.80313 4.89141 4.95062 4.98299 5.05886 5.30417 5.36849 5.38331 5.39578 5.49860 6.05936 6.13744 6.22105 6.44805 6.68625 6.87493 7.29197 7.99638 8.26401 9.22306 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020520 B = 0.002073 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.179781 B =13503.857968 C =14619.996746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.362 5.362 3 C 0.075 3.925 4 C -0.258 4.258 5 C 0.110 3.890 6 C 0.062 3.938 7 C -0.157 4.157 8 C -0.027 4.027 9 C 0.585 3.415 10 O -0.565 6.565 11 N -0.588 5.588 12 C 0.085 3.915 13 C -0.119 4.119 14 C -0.117 4.117 15 C 0.168 3.832 16 H 0.033 0.967 17 N -0.727 5.727 18 C -0.249 4.249 19 H 0.065 0.935 20 C -0.067 4.067 21 N -0.962 5.962 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.106 3.894 27 N -0.316 5.316 28 O 0.150 5.850 29 N -0.302 5.302 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.177 0.823 35 H 0.183 0.817 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.379 0.621 43 H 0.253 0.747 44 H 0.057 0.943 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.855 32.932 1.206 38.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.146 5.146 3 C -0.070 4.070 4 C -0.286 4.286 5 C -0.052 4.052 6 C -0.004 4.004 7 C -0.182 4.182 8 C -0.183 4.183 9 C 0.372 3.628 10 O -0.443 6.443 11 N -0.320 5.320 12 C -0.036 4.036 13 C -0.157 4.157 14 C -0.156 4.156 15 C 0.058 3.942 16 H 0.051 0.949 17 N -0.367 5.367 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.260 4.260 21 N -0.612 5.612 22 Si 0.798 3.202 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.019 4.019 27 N -0.016 5.016 28 O 0.073 5.927 29 N -0.130 5.130 30 H 0.109 0.891 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.247 0.753 34 H 0.194 0.806 35 H 0.200 0.800 36 H 0.139 0.861 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.211 0.789 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.928 31.521 1.205 37.312 hybrid contribution -0.091 -1.480 0.106 1.486 sum -20.020 30.041 1.311 36.125 Atomic orbital electron populations 1.22368 0.71068 1.06517 1.05147 1.48975 1.08245 1.02909 1.54513 1.23309 0.89733 0.95105 0.98896 1.21907 0.99602 0.91900 1.15240 1.18877 0.88190 0.92950 1.05208 1.20878 0.84498 0.90979 1.04002 1.22657 0.96113 0.94674 1.04767 1.23065 0.93196 0.93179 1.08840 1.17353 0.82327 0.86041 0.77121 1.90779 1.61319 1.40049 1.52115 1.48191 1.05561 1.10638 1.67598 1.22622 0.94363 0.87771 0.98866 1.21860 0.99144 0.97673 0.97021 1.21745 0.97593 0.93727 1.02494 1.20625 0.93165 0.86544 0.93891 0.94931 1.42468 1.14766 1.00853 1.78567 1.19484 0.97213 0.85560 1.35771 0.91658 1.25500 0.97045 1.00895 1.02531 1.69789 1.11348 1.26835 1.53202 0.85286 0.77249 0.79543 0.78129 1.20396 1.21479 1.20941 1.22436 0.96634 0.82325 1.00512 1.74010 1.15885 0.95205 1.16504 1.84858 1.12792 1.29999 1.65028 1.77630 1.00485 1.09918 1.24944 0.89080 0.85341 0.89519 0.75303 0.80555 0.79963 0.86084 0.89615 0.92194 0.86910 0.91126 0.91513 0.78851 0.93785 0.92480 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.20 11.46 127.77 1.46 1.66 16 2 N -0.36 -4.01 4.01 -369.71 -1.48 -5.49 16 3 C 0.08 0.50 11.46 83.45 0.96 1.45 16 4 C -0.26 -3.04 10.77 22.21 0.24 -2.80 16 5 C 0.11 2.12 7.11 42.38 0.30 2.42 16 6 C 0.06 1.36 7.35 24.46 0.18 1.54 16 7 C -0.16 -4.20 10.95 22.82 0.25 -3.95 16 8 C -0.03 -0.79 6.86 42.85 0.29 -0.50 16 9 C 0.59 21.72 7.71 86.93 0.67 22.39 16 10 O -0.56 -25.31 16.38 -3.67 -0.06 -25.37 16 11 N -0.59 -20.48 2.97 -821.76 -2.44 -22.92 16 12 C 0.09 2.23 6.13 86.36 0.53 2.76 16 13 C -0.12 -2.95 6.08 30.67 0.19 -2.77 16 14 C -0.12 -3.79 5.36 30.62 0.16 -3.62 16 15 C 0.17 7.10 2.92 45.07 0.13 7.23 16 16 H 0.03 1.50 8.08 -2.39 -0.02 1.48 16 17 N -0.73 -37.91 5.13 -322.60 -1.65 -39.57 16 18 C -0.25 -14.51 9.93 84.03 0.83 -13.67 16 19 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 21 N -0.96 -59.53 13.06 21.65 0.28 -59.24 16 22 Si 0.97 48.14 29.55 68.60 2.03 50.17 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 26 C 0.11 4.36 6.03 86.36 0.52 4.88 16 27 N -0.32 -7.89 8.62 -48.99 -0.42 -8.31 16 28 O 0.15 3.17 11.20 67.74 0.76 3.93 16 29 N -0.30 -6.06 12.60 -48.36 -0.61 -6.67 16 30 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.13 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.23 -0.89 8.06 -2.91 -0.02 -0.91 16 34 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 36 H 0.12 2.95 4.19 -12.66 -0.05 2.90 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.38 20.61 7.80 -92.70 -0.72 19.89 16 43 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.06 2.76 7.00 -2.38 -0.02 2.74 16 45 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -80.29 381.12 3.86 -76.44 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.27 Total: 23.49 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 7.19 Total: 13.54 kcal Atomic # 7 Polarization: -135.88 SS G_CDS: -6.33 Total: -142.20 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.70 Total: -21.44 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -80.29 3.86 -76.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999250405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.491 kcal (2) G-P(sol) polarization free energy of solvation -80.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds