Wall clock time and date at job start Wed Apr 1 2020 03:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35968 * 126.36228 * 2 1 4 4 N 1.30197 * 110.06892 * 180.02562 * 3 2 1 5 5 C 1.35733 * 109.68135 * 359.97438 * 4 3 2 6 6 N 1.33105 * 133.20257 * 179.97438 * 5 4 3 7 7 C 1.31842 * 121.83117 * 180.02562 * 6 5 4 8 8 O 1.35727 * 119.27755 * 179.97438 * 7 6 5 9 9 C 1.39132 * 121.44768 * 359.77005 * 7 6 5 10 10 C 1.39567 * 119.22983 * 0.46951 * 9 7 6 11 11 C 1.47910 * 121.00497 * 179.80616 * 10 9 7 12 12 O 1.21544 * 119.99821 * 125.10624 * 11 10 9 13 13 N 1.34775 * 120.00157 * 305.10355 * 11 10 9 14 14 C 1.46927 * 120.62792 * 354.48885 * 13 11 10 15 15 C 1.53195 * 108.76964 * 126.41623 * 14 13 11 16 16 C 1.53035 * 109.31653 * 54.63756 * 15 14 13 17 17 C 1.53046 * 109.53529 * 298.63011 * 16 15 14 18 18 H 1.08998 * 109.50018 * 301.38043 * 17 16 15 19 19 N 1.46496 * 109.49763 * 181.31510 * 17 16 15 20 20 C 1.36940 * 120.00178 * 155.00146 * 19 17 16 21 21 H 1.07993 * 119.99477 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99982 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99661 * 179.72275 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47460 * 89.99327 * 24 22 20 26 26 H 1.48497 * 109.47053 * 210.00107 * 24 22 20 27 27 H 1.48504 * 109.46820 * 329.99515 * 24 22 20 28 28 C 1.46921 * 120.63280 * 174.51690 * 13 11 10 29 29 C 1.37607 * 126.36652 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.47183 * 274.81736 * 1 2 3 31 31 H 1.08993 * 109.47625 * 34.82152 * 1 2 3 32 32 H 1.09007 * 109.47160 * 154.82583 * 1 2 3 33 33 H 1.08008 * 124.96246 * 359.97438 * 3 2 1 34 34 H 0.96697 * 114.00092 * 90.00073 * 8 7 6 35 35 H 1.07997 * 120.38312 * 180.28022 * 9 7 6 36 36 H 1.09001 * 109.58853 * 6.63420 * 14 13 11 37 37 H 1.08993 * 109.70633 * 246.27198 * 14 13 11 38 38 H 1.09003 * 109.49852 * 294.67709 * 15 14 13 39 39 H 1.09005 * 109.49563 * 174.59229 * 15 14 13 40 40 H 1.09003 * 109.45991 * 178.61513 * 16 15 14 41 41 H 1.08996 * 109.45039 * 58.64113 * 16 15 14 42 42 H 0.97001 * 120.00025 * 335.00556 * 19 17 16 43 43 H 0.96997 * 119.99618 * 179.97438 * 23 22 20 44 44 H 1.08997 * 109.58860 * 113.79446 * 28 13 11 45 45 H 1.09004 * 109.58694 * 353.37282 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0949 0.0000 4 7 3.5208 0.7297 -0.0005 5 6 3.6010 -0.6253 -0.0004 6 7 4.6234 -1.4776 -0.0012 7 6 4.4403 -2.7832 -0.0012 8 8 5.5206 -3.6050 -0.0026 9 6 3.1641 -3.3372 0.0043 10 6 2.0539 -2.4914 0.0000 11 6 0.6796 -3.0380 0.0013 12 8 -0.1094 -2.6966 0.8605 13 7 0.3021 -3.9147 -0.9502 14 6 1.2025 -4.2451 -2.0632 15 6 1.3649 -5.7670 -2.1307 16 6 -0.0160 -6.4197 -2.2245 17 6 -0.8305 -6.0760 -0.9752 18 1 -0.3016 -6.4254 -0.0885 19 7 -2.1407 -6.7269 -1.0512 20 6 -2.8329 -7.0087 0.0962 21 1 -2.4130 -6.7507 1.0572 22 6 -4.0746 -7.6251 0.0241 23 7 -4.7374 -7.9009 1.1273 24 14 -4.8011 -8.0707 -1.6381 25 1 -4.3748 -9.4428 -2.0129 26 1 -6.2831 -8.0162 -1.5613 27 1 -4.3228 -7.1069 -2.6617 28 6 -1.0178 -4.5576 -0.8946 29 6 2.2809 -1.1081 -0.0005 30 1 -0.3634 0.0863 1.0241 31 1 -0.3634 0.8436 -0.5868 32 1 -0.3634 -0.9301 -0.4372 33 1 1.9253 2.1181 -0.0004 34 1 5.8345 -3.8433 0.8804 35 1 3.0340 -4.4093 0.0087 36 1 2.1747 -3.7810 -1.8969 37 1 0.7790 -3.8810 -2.9992 38 1 1.8736 -6.1188 -1.2331 39 1 1.9529 -6.0314 -3.0097 40 1 0.0978 -7.5014 -2.2975 41 1 -0.5337 -6.0485 -3.1089 42 1 -2.5179 -6.9583 -1.9144 43 1 -5.6052 -8.3312 1.0769 44 1 -1.6248 -4.2192 -1.7343 45 1 -1.5108 -4.2995 0.0427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999342080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:18 Heat of formation + Delta-G solvation = 48.854255 kcal Electronic energy + Delta-G solvation = -30853.615883 eV Core-core repulsion = 26680.658718 eV Total energy + Delta-G solvation = -4172.957165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.80992 -40.34350 -39.42546 -37.64650 -36.55422 -34.88557 -34.51130 -32.73253 -32.15465 -31.42340 -29.57247 -28.92002 -27.39003 -26.10538 -24.37266 -23.88747 -23.31880 -22.09240 -21.75097 -20.35517 -19.59707 -18.66306 -18.29372 -17.68377 -17.47367 -17.29722 -16.36555 -16.09866 -15.55790 -15.36655 -14.95524 -14.81720 -14.52593 -14.44796 -14.20575 -13.93770 -13.84017 -13.56486 -13.33062 -13.14483 -12.74547 -12.60000 -12.37193 -12.13916 -12.05950 -11.78095 -11.36705 -11.12899 -11.02849 -11.02472 -10.84271 -10.80402 -10.43831 -10.29603 -10.02721 -9.68453 -9.45129 -9.22974 -9.02008 -8.78214 -8.61715 -7.41145 -5.86471 -3.24624 0.16044 0.76637 2.05456 2.15466 2.52443 2.80850 2.95215 3.28953 3.31703 3.38282 3.40493 3.88552 3.99753 4.20394 4.36576 4.49190 4.55354 4.67490 4.72200 4.85846 4.89189 4.92965 5.06104 5.21043 5.25353 5.33067 5.33390 5.36780 5.45229 5.60556 5.65347 5.74148 5.75626 5.88198 5.92672 5.96275 6.10237 6.21891 6.42093 6.55801 6.56970 6.72896 7.05783 7.27994 7.31837 7.66602 7.87159 7.94979 8.31898 9.08526 9.80170 9.97984 11.31280 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.003023 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.469365 B = 9259.161198 C =10214.878287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.478 5.478 3 C 0.290 3.710 4 N -0.486 5.486 5 C 0.273 3.727 6 N -0.455 5.455 7 C 0.330 3.670 8 O -0.474 6.474 9 C -0.142 4.142 10 C -0.042 4.042 11 C 0.553 3.447 12 O -0.523 6.523 13 N -0.592 5.592 14 C 0.097 3.903 15 C -0.129 4.129 16 C -0.131 4.131 17 C 0.173 3.827 18 H 0.061 0.939 19 N -0.741 5.741 20 C -0.252 4.252 21 H 0.092 0.908 22 C 0.009 3.991 23 N -0.929 5.929 24 Si 0.885 3.115 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.091 3.909 29 C 0.021 3.979 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.227 0.773 34 H 0.403 0.597 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.363 0.637 43 H 0.261 0.739 44 H 0.064 0.936 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.832 14.222 -6.449 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.167 5.167 3 C 0.002 3.998 4 N -0.207 5.207 5 C 0.030 3.970 6 N -0.176 5.176 7 C 0.139 3.861 8 O -0.280 6.280 9 C -0.166 4.166 10 C -0.056 4.056 11 C 0.339 3.661 12 O -0.400 6.400 13 N -0.325 5.325 14 C -0.026 4.026 15 C -0.167 4.167 16 C -0.169 4.169 17 C 0.062 3.938 18 H 0.079 0.921 19 N -0.383 5.383 20 C -0.382 4.382 21 H 0.109 0.891 22 C -0.187 4.187 23 N -0.575 5.575 24 Si 0.715 3.285 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.033 4.033 29 C -0.093 4.093 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.243 0.757 34 H 0.261 0.739 35 H 0.176 0.824 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.196 0.804 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.630 15.223 -6.346 23.421 hybrid contribution -2.112 -1.212 -0.656 2.521 sum 14.518 14.011 -7.003 21.357 Atomic orbital electron populations 1.22280 0.74368 1.05142 1.04774 1.45191 1.08201 1.04983 1.58279 1.25678 0.84209 0.93908 0.95956 1.70383 1.18190 1.08886 1.23195 1.18889 0.85165 0.90580 1.02385 1.65854 1.35061 1.03011 1.13692 1.18484 0.85693 0.85006 0.96925 1.84834 1.45862 1.63063 1.34268 1.22095 0.90517 1.01504 1.02456 1.19162 0.94838 0.89699 1.01922 1.18112 0.86156 0.79642 0.82206 1.90843 1.52743 1.59247 1.37208 1.48252 1.18292 1.41822 1.24108 1.21962 0.94243 0.96854 0.89553 1.21872 0.98125 0.93945 1.02792 1.21883 0.94858 1.01154 0.99007 1.20460 0.87214 0.89607 0.96473 0.92060 1.42732 1.18392 1.71310 1.05832 1.19080 0.99377 1.33218 0.86489 0.89060 1.24691 0.97058 1.00534 0.96451 1.69704 1.14959 1.47146 1.25737 0.86557 0.78751 0.78487 0.84721 1.20968 1.21656 1.20338 1.22865 0.81275 0.95238 1.03881 1.19459 0.93434 0.88788 1.07637 0.89444 0.89235 0.89028 0.75690 0.73884 0.82443 0.89765 0.91096 0.91183 0.90504 0.91023 0.92059 0.80380 0.92902 0.91793 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.08 59.85 0.60 1.25 16 2 N -0.48 -4.94 3.19 -122.88 -0.39 -5.34 16 3 C 0.29 2.55 12.50 -89.78 -1.12 1.43 16 4 N -0.49 -6.22 11.27 -13.60 -0.15 -6.37 16 5 C 0.27 3.83 8.37 -156.97 -1.31 2.52 16 6 N -0.46 -6.41 10.41 -12.77 -0.13 -6.55 16 7 C 0.33 3.79 7.71 -17.22 -0.13 3.66 16 8 O -0.47 -4.31 13.55 -18.89 -0.26 -4.57 16 9 C -0.14 -1.55 7.61 -38.75 -0.29 -1.84 16 10 C -0.04 -0.53 4.74 -104.71 -0.50 -1.03 16 11 C 0.55 7.98 5.82 -12.30 -0.07 7.91 16 12 O -0.52 -9.16 14.47 5.33 0.08 -9.08 16 13 N -0.59 -7.97 2.97 -173.86 -0.52 -8.49 16 14 C 0.10 1.01 5.96 -3.71 -0.02 0.98 16 15 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 16 C -0.13 -1.73 5.35 -26.69 -0.14 -1.87 16 17 C 0.17 3.02 2.92 -67.81 -0.20 2.82 16 18 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 19 N -0.74 -16.28 4.93 -53.31 -0.26 -16.55 16 20 C -0.25 -6.81 10.41 -15.06 -0.16 -6.97 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 22 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 23 N -0.93 -28.49 13.97 55.49 0.78 -27.72 16 24 Si 0.88 21.19 27.74 -169.99 -4.71 16.48 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 28 C 0.09 1.51 6.00 -3.71 -0.02 1.48 16 29 C 0.02 0.28 6.82 -83.67 -0.57 -0.29 16 30 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.00 5.58 -51.93 -0.29 0.71 16 33 H 0.23 0.73 8.06 -52.48 -0.42 0.30 16 34 H 0.40 1.67 9.06 45.56 0.41 2.09 16 35 H 0.16 1.42 7.85 -52.49 -0.41 1.01 16 36 H 0.08 0.81 4.88 -51.93 -0.25 0.56 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.36 7.79 5.66 -40.82 -0.23 7.56 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.10 1.93 7.04 -51.93 -0.37 1.56 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -36.89 366.83 -9.20 -46.09 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.95 Total: 7.82 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -4.20 Total: 8.74 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -0.68 Total: -71.00 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.18 Total: -13.65 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.89 -9.20 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999342080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.945 kcal (2) G-P(sol) polarization free energy of solvation -36.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds