Wall clock time and date at job start Wed Apr 1 2020 03:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35968 * 126.36228 * 2 1 4 4 N 1.30197 * 110.06892 * 180.02562 * 3 2 1 5 5 C 1.35733 * 109.68135 * 359.97438 * 4 3 2 6 6 N 1.33105 * 133.20257 * 179.97438 * 5 4 3 7 7 C 1.31842 * 121.83117 * 180.02562 * 6 5 4 8 8 O 1.35727 * 119.27755 * 179.97438 * 7 6 5 9 9 C 1.39132 * 121.44768 * 359.77005 * 7 6 5 10 10 C 1.39567 * 119.22983 * 0.46951 * 9 7 6 11 11 C 1.47910 * 121.00497 * 179.80616 * 10 9 7 12 12 O 1.21544 * 119.99821 * 125.10624 * 11 10 9 13 13 N 1.34775 * 120.00157 * 305.10355 * 11 10 9 14 14 C 1.46927 * 120.62792 * 354.48885 * 13 11 10 15 15 C 1.53195 * 108.76964 * 126.41623 * 14 13 11 16 16 C 1.53035 * 109.31653 * 54.63756 * 15 14 13 17 17 C 1.53046 * 109.53529 * 298.63011 * 16 15 14 18 18 H 1.08998 * 109.50018 * 301.38043 * 17 16 15 19 19 N 1.46496 * 109.49763 * 181.31510 * 17 16 15 20 20 C 1.36940 * 120.00178 * 155.00146 * 19 17 16 21 21 H 1.07993 * 119.99477 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99982 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99661 * 179.72275 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47460 * 89.99327 * 24 22 20 26 26 H 1.48497 * 109.47053 * 210.00107 * 24 22 20 27 27 H 1.48504 * 109.46820 * 329.99515 * 24 22 20 28 28 C 1.46921 * 120.63280 * 174.51690 * 13 11 10 29 29 C 1.37607 * 126.36652 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.47183 * 274.81736 * 1 2 3 31 31 H 1.08993 * 109.47625 * 34.82152 * 1 2 3 32 32 H 1.09007 * 109.47160 * 154.82583 * 1 2 3 33 33 H 1.08008 * 124.96246 * 359.97438 * 3 2 1 34 34 H 0.96697 * 114.00092 * 90.00073 * 8 7 6 35 35 H 1.07997 * 120.38312 * 180.28022 * 9 7 6 36 36 H 1.09001 * 109.58853 * 6.63420 * 14 13 11 37 37 H 1.08993 * 109.70633 * 246.27198 * 14 13 11 38 38 H 1.09003 * 109.49852 * 294.67709 * 15 14 13 39 39 H 1.09005 * 109.49563 * 174.59229 * 15 14 13 40 40 H 1.09003 * 109.45991 * 178.61513 * 16 15 14 41 41 H 1.08996 * 109.45039 * 58.64113 * 16 15 14 42 42 H 0.97001 * 120.00025 * 335.00556 * 19 17 16 43 43 H 0.96997 * 119.99618 * 179.97438 * 23 22 20 44 44 H 1.08997 * 109.58860 * 113.79446 * 28 13 11 45 45 H 1.09004 * 109.58694 * 353.37282 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0949 0.0000 4 7 3.5208 0.7297 -0.0005 5 6 3.6010 -0.6253 -0.0004 6 7 4.6234 -1.4776 -0.0012 7 6 4.4403 -2.7832 -0.0012 8 8 5.5206 -3.6050 -0.0026 9 6 3.1641 -3.3372 0.0043 10 6 2.0539 -2.4914 0.0000 11 6 0.6796 -3.0380 0.0013 12 8 -0.1094 -2.6966 0.8605 13 7 0.3021 -3.9147 -0.9502 14 6 1.2025 -4.2451 -2.0632 15 6 1.3649 -5.7670 -2.1307 16 6 -0.0160 -6.4197 -2.2245 17 6 -0.8305 -6.0760 -0.9752 18 1 -0.3016 -6.4254 -0.0885 19 7 -2.1407 -6.7269 -1.0512 20 6 -2.8329 -7.0087 0.0962 21 1 -2.4130 -6.7507 1.0572 22 6 -4.0746 -7.6251 0.0241 23 7 -4.7374 -7.9009 1.1273 24 14 -4.8011 -8.0707 -1.6381 25 1 -4.3748 -9.4428 -2.0129 26 1 -6.2831 -8.0162 -1.5613 27 1 -4.3228 -7.1069 -2.6617 28 6 -1.0178 -4.5576 -0.8946 29 6 2.2809 -1.1081 -0.0005 30 1 -0.3634 0.0863 1.0241 31 1 -0.3634 0.8436 -0.5868 32 1 -0.3634 -0.9301 -0.4372 33 1 1.9253 2.1181 -0.0004 34 1 5.8345 -3.8433 0.8804 35 1 3.0340 -4.4093 0.0087 36 1 2.1747 -3.7810 -1.8969 37 1 0.7790 -3.8810 -2.9992 38 1 1.8736 -6.1188 -1.2331 39 1 1.9529 -6.0314 -3.0097 40 1 0.0978 -7.5014 -2.2975 41 1 -0.5337 -6.0485 -3.1089 42 1 -2.5179 -6.9583 -1.9144 43 1 -5.6052 -8.3312 1.0769 44 1 -1.6248 -4.2192 -1.7343 45 1 -1.5108 -4.2995 0.0427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999342080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:17 Heat of formation + Delta-G solvation = 19.472904 kcal Electronic energy + Delta-G solvation = -30854.889954 eV Core-core repulsion = 26680.658718 eV Total energy + Delta-G solvation = -4174.231236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.65292 -41.43925 -40.29256 -38.89925 -37.35357 -36.40037 -35.44681 -34.13521 -33.19426 -32.98211 -30.56606 -30.29390 -28.17059 -27.16505 -25.72000 -25.19991 -24.18722 -23.18912 -22.96507 -21.57817 -20.57077 -19.71264 -19.48098 -19.13451 -18.36514 -18.31734 -17.23534 -17.19304 -16.66427 -16.47895 -16.25772 -15.88541 -15.80335 -15.46205 -15.29529 -15.13972 -14.81954 -14.69183 -14.37171 -14.28597 -14.22375 -13.90465 -13.44130 -13.20336 -12.99021 -12.89815 -12.84950 -12.56494 -12.19890 -12.09503 -11.96001 -11.88715 -11.86471 -11.83058 -11.43411 -11.37611 -11.11508 -10.38349 -9.99550 -9.86674 -9.62244 -9.29951 -8.04448 -5.40639 -0.73194 -0.10338 1.16023 1.37544 1.39611 1.42482 1.49262 1.53867 1.71003 2.16725 2.47254 2.52045 2.94673 3.23625 3.26476 3.32463 3.49501 3.61300 3.85597 3.91476 3.98434 4.01396 4.03281 4.07752 4.22157 4.29127 4.32734 4.44810 4.54172 4.58822 4.62079 4.66974 4.81092 4.85644 4.92367 4.98914 5.11270 5.15486 5.33012 5.35851 5.42748 5.74174 5.87447 6.16430 6.19500 6.30599 6.64852 6.80670 6.82614 7.04871 7.77627 7.98527 9.17085 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.003023 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.469365 B = 9259.161198 C =10214.878287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.482 5.482 3 C 0.313 3.687 4 N -0.525 5.525 5 C 0.254 3.746 6 N -0.485 5.485 7 C 0.338 3.662 8 O -0.475 6.475 9 C -0.132 4.132 10 C -0.050 4.050 11 C 0.555 3.445 12 O -0.563 6.563 13 N -0.587 5.587 14 C 0.094 3.906 15 C -0.121 4.121 16 C -0.122 4.122 17 C 0.169 3.831 18 H 0.037 0.963 19 N -0.742 5.742 20 C -0.236 4.236 21 H 0.048 0.952 22 C -0.063 4.063 23 N -0.984 5.984 24 Si 0.960 3.040 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.245 1.245 28 C 0.106 3.894 29 C 0.005 3.995 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.064 0.936 33 H 0.280 0.720 34 H 0.424 0.576 35 H 0.177 0.823 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.370 0.630 43 H 0.258 0.742 44 H 0.073 0.927 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.234 15.097 -9.646 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.170 5.170 3 C 0.026 3.974 4 N -0.246 5.246 5 C 0.012 3.988 6 N -0.207 5.207 7 C 0.146 3.854 8 O -0.285 6.285 9 C -0.155 4.155 10 C -0.064 4.064 11 C 0.343 3.657 12 O -0.443 6.443 13 N -0.319 5.319 14 C -0.027 4.027 15 C -0.160 4.160 16 C -0.160 4.160 17 C 0.060 3.940 18 H 0.056 0.944 19 N -0.386 5.386 20 C -0.367 4.367 21 H 0.066 0.934 22 C -0.254 4.254 23 N -0.634 5.634 24 Si 0.787 3.213 25 H -0.202 1.202 26 H -0.226 1.226 27 H -0.169 1.169 28 C -0.019 4.019 29 C -0.111 4.111 30 H 0.100 0.900 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.295 0.705 34 H 0.286 0.714 35 H 0.194 0.806 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.204 0.796 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.114 16.110 -9.581 26.066 hybrid contribution -2.429 -1.409 0.450 2.843 sum 15.686 14.701 -9.131 23.357 Atomic orbital electron populations 1.22343 0.73373 1.05511 1.04991 1.45424 1.08777 1.04738 1.58014 1.26735 0.82900 0.95274 0.92457 1.70380 1.20340 1.08480 1.25437 1.19155 0.85526 0.91259 1.02899 1.65873 1.35816 1.04078 1.14959 1.18549 0.86363 0.84582 0.95877 1.84790 1.45096 1.62380 1.36209 1.22219 0.89795 1.02096 1.01418 1.19028 0.93939 0.90091 1.03330 1.18362 0.86583 0.79245 0.81539 1.90822 1.54032 1.60631 1.38784 1.48206 1.17590 1.41232 1.24856 1.22230 0.94192 0.97393 0.88874 1.21879 0.96448 0.93033 1.04596 1.21808 0.95902 1.01686 0.96625 1.20650 0.85575 0.89566 0.98218 0.94447 1.42659 1.19635 1.71924 1.04349 1.18955 0.99420 1.31588 0.86736 0.93388 1.25581 0.97726 1.01299 1.00837 1.69908 1.15529 1.49207 1.28774 0.85344 0.76981 0.78959 0.80050 1.20198 1.22587 1.16946 1.22344 0.82802 0.94757 1.01948 1.19587 0.93804 0.89405 1.08271 0.90048 0.84923 0.91750 0.70472 0.71384 0.80603 0.88504 0.89291 0.91106 0.86910 0.90892 0.90574 0.79555 0.93285 0.90900 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.08 127.77 1.29 2.53 16 2 N -0.48 -9.32 3.19 -542.68 -1.73 -11.05 16 3 C 0.31 4.79 12.50 180.05 2.25 7.04 16 4 N -0.52 -12.85 11.27 -196.93 -2.22 -15.07 16 5 C 0.25 7.01 8.37 134.28 1.12 8.13 16 6 N -0.49 -13.40 10.41 -307.36 -3.20 -16.59 16 7 C 0.34 7.31 7.71 84.91 0.65 7.97 16 8 O -0.47 -7.72 13.55 -90.50 -1.23 -8.94 16 9 C -0.13 -2.70 7.61 22.81 0.17 -2.52 16 10 C -0.05 -1.24 4.74 -19.92 -0.09 -1.33 16 11 C 0.56 16.16 5.82 86.81 0.51 16.67 16 12 O -0.56 -20.66 14.47 -3.85 -0.06 -20.72 16 13 N -0.59 -15.37 2.97 -822.24 -2.44 -17.81 16 14 C 0.09 1.68 5.96 86.36 0.51 2.19 16 15 C -0.12 -2.00 6.08 30.67 0.19 -1.81 16 16 C -0.12 -2.87 5.35 30.62 0.16 -2.71 16 17 C 0.17 5.85 2.92 45.07 0.13 5.98 16 18 H 0.04 1.46 8.08 -2.39 -0.02 1.45 16 19 N -0.74 -32.47 4.93 -322.57 -1.59 -34.06 16 20 C -0.24 -13.20 10.41 84.03 0.88 -12.33 16 21 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 22 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 23 N -0.98 -62.87 13.97 21.65 0.30 -62.56 16 24 Si 0.96 43.78 27.74 68.60 1.90 45.68 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 27 H -0.25 -9.77 6.52 99.48 0.65 -9.12 16 28 C 0.11 3.54 6.00 86.36 0.52 4.05 16 29 C 0.00 0.12 6.82 39.28 0.27 0.38 16 30 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.41 5.58 -2.38 -0.01 1.40 16 33 H 0.28 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.42 2.70 9.06 -74.06 -0.67 2.03 16 35 H 0.18 2.81 7.85 -2.91 -0.02 2.78 16 36 H 0.10 1.56 4.88 -2.39 -0.01 1.55 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.37 15.12 5.66 -92.71 -0.52 14.59 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 2.27 7.04 -2.38 -0.02 2.25 16 Total: -1.00 -86.50 366.83 -1.43 -87.92 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.19 Total: 22.14 kcal Atomic # 6 Polarization: 22.04 SS G_CDS: 9.03 Total: 31.07 kcal Atomic # 7 Polarization: -146.27 SS G_CDS: -10.88 Total: -157.15 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.28 Total: -29.66 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.90 Total: 45.68 kcal Total: -86.50 -1.43 -87.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999342080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.396 kcal (2) G-P(sol) polarization free energy of solvation -86.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds