Wall clock time and date at job start Wed Apr 1 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34457 * 125.77018 * 2 1 4 4 C 1.38069 * 107.39469 * 179.97438 * 3 2 1 5 5 C 1.47348 * 126.41349 * 179.97438 * 4 3 2 6 6 O 1.34262 * 127.19461 * 5.73475 * 5 4 3 7 7 N 1.20733 * 111.95238 * 180.25725 * 6 5 4 8 8 C 1.29882 * 112.81513 * 0.02562 * 7 6 5 9 9 C 1.39926 * 127.19677 * 186.04814 * 5 4 3 10 10 C 1.46914 * 128.39783 * 359.72086 * 9 5 4 11 11 O 1.21664 * 119.99985 * 49.08311 * 10 9 5 12 12 N 1.34781 * 119.99957 * 229.09035 * 10 9 5 13 13 C 1.46926 * 120.63197 * 5.35608 * 12 10 9 14 14 C 1.53189 * 108.77463 * 126.37276 * 13 12 10 15 15 C 1.53036 * 109.31645 * 54.63586 * 14 13 12 16 16 C 1.53041 * 109.53659 * 298.63417 * 15 14 13 17 17 H 1.09000 * 109.50091 * 301.38164 * 16 15 14 18 18 N 1.46502 * 109.49863 * 181.31422 * 16 15 14 19 19 C 1.36938 * 119.99996 * 154.99846 * 18 16 15 20 20 H 1.08003 * 120.00019 * 0.02562 * 19 18 16 21 21 C 1.38809 * 119.99733 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99595 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00412 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47005 * 89.99160 * 23 21 19 25 25 H 1.48494 * 109.47155 * 209.99634 * 23 21 19 26 26 H 1.48502 * 109.46790 * 329.99907 * 23 21 19 27 27 C 1.46929 * 120.63059 * 185.08012 * 12 10 9 28 28 C 1.41302 * 107.17660 * 0.24292 * 4 3 2 29 29 N 1.30488 * 108.05553 * 359.58920 * 28 4 3 30 30 H 1.09001 * 109.46693 * 90.00128 * 1 2 3 31 31 H 1.09000 * 109.47078 * 210.00581 * 1 2 3 32 32 H 1.09000 * 109.47074 * 330.00671 * 1 2 3 33 33 H 1.08006 * 126.30309 * 0.02562 * 3 2 1 34 34 H 1.07992 * 126.78955 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.58826 * 246.16232 * 13 12 10 36 36 H 1.09004 * 109.58613 * 6.44183 * 13 12 10 37 37 H 1.09006 * 109.49583 * 174.59133 * 14 13 12 38 38 H 1.09000 * 109.49736 * 294.67873 * 14 13 12 39 39 H 1.08994 * 109.45698 * 58.65225 * 15 14 13 40 40 H 1.09000 * 109.46349 * 178.61723 * 15 14 13 41 41 H 0.96994 * 119.99835 * 334.99823 * 18 16 15 42 42 H 0.97003 * 119.99688 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.58078 * 353.41671 * 27 12 10 44 44 H 1.08998 * 109.58949 * 113.84061 * 27 12 10 45 45 H 1.07999 * 125.97662 * 179.75632 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.0909 0.0000 4 6 3.5613 0.6557 0.0006 5 6 4.7652 1.5053 0.0003 6 8 4.8147 2.8428 0.1062 7 7 5.9482 3.2568 0.0695 8 6 6.8265 2.3091 -0.0629 9 6 6.0954 1.0874 -0.1166 10 6 6.6131 -0.2801 -0.2599 11 8 6.1336 -1.0280 -1.0911 12 7 7.6190 -0.7060 0.5296 13 6 8.1295 0.1425 1.6150 14 6 8.0940 -0.6549 2.9225 15 6 8.8604 -1.9664 2.7366 16 6 8.1890 -2.8010 1.6435 17 1 7.1537 -2.9989 1.9211 18 7 8.9047 -4.0698 1.4880 19 6 8.2550 -5.1652 0.9850 20 1 7.2150 -5.0938 0.7025 21 6 8.9333 -6.3672 0.8372 22 7 8.3089 -7.4200 0.3532 23 14 10.7322 -6.4908 1.3250 24 1 10.8319 -6.8954 2.7503 25 1 11.4073 -7.5036 0.4744 26 1 11.3874 -5.1712 1.1381 27 6 8.2219 -2.0302 0.3250 28 6 3.5317 -0.7570 -0.0048 29 7 2.2829 -1.1354 0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.9185 2.1186 0.0004 34 1 7.8987 2.4244 -0.1200 35 1 9.1552 0.4389 1.3955 36 1 7.5047 1.0307 1.7091 37 1 8.5588 -0.0713 3.7172 38 1 7.0594 -0.8725 3.1879 39 1 9.8883 -1.7483 2.4471 40 1 8.8576 -2.5246 3.6728 41 1 9.8388 -4.1339 1.7413 42 1 8.7828 -8.2601 0.2503 43 1 7.6565 -2.5763 -0.4302 44 1 9.2553 -1.9147 -0.0019 45 1 4.3922 -1.4096 -0.0095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999792710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:30 Heat of formation + Delta-G solvation = 133.691173 kcal Electronic energy + Delta-G solvation = -30496.433932 eV Core-core repulsion = 26327.155571 eV Total energy + Delta-G solvation = -4169.278361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -45.01775 -41.40567 -39.92122 -37.41304 -34.77519 -34.16393 -33.82323 -32.48271 -32.25004 -31.33509 -29.81327 -28.83941 -27.14682 -25.98818 -24.12710 -23.73829 -23.04906 -21.75636 -21.32924 -20.97857 -20.29678 -19.11982 -18.08687 -17.84503 -17.55762 -17.24540 -16.21346 -15.89517 -15.78718 -15.35808 -14.81857 -14.61955 -14.47013 -14.26001 -13.88287 -13.73862 -13.54704 -13.33124 -13.15253 -13.12751 -12.86281 -12.63483 -12.49174 -12.35087 -11.78908 -11.64479 -11.24631 -10.96009 -10.93059 -10.80747 -10.71494 -10.53105 -10.40888 -10.31158 -9.90680 -9.84063 -9.75517 -9.57602 -9.10907 -8.45361 -8.27597 -7.29981 -5.76322 -3.14000 0.62863 1.70248 1.78515 2.07479 2.64607 2.69966 2.88789 3.25642 3.36933 3.39248 3.45687 3.99220 4.08056 4.38208 4.50959 4.58423 4.64895 4.75372 4.78286 4.80414 4.99083 5.02958 5.09226 5.14133 5.20999 5.34245 5.42537 5.45419 5.49737 5.54656 5.68668 5.71327 5.80755 5.88442 6.01739 6.07161 6.23257 6.31855 6.36761 6.52054 6.62784 6.71203 6.88608 7.37750 7.53140 7.99244 8.00399 8.26439 8.42310 9.19271 9.90823 10.08986 11.41597 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.003233 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.090927 B = 8657.462969 C =10285.349721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.365 5.365 3 C 0.101 3.899 4 C -0.200 4.200 5 C 0.127 3.873 6 O 0.097 5.903 7 N -0.370 5.370 8 C 0.034 3.966 9 C -0.254 4.254 10 C 0.593 3.407 11 O -0.525 6.525 12 N -0.596 5.596 13 C 0.105 3.895 14 C -0.129 4.129 15 C -0.130 4.130 16 C 0.173 3.827 17 H 0.061 0.939 18 N -0.742 5.742 19 C -0.248 4.248 20 H 0.093 0.907 21 C 0.008 3.992 22 N -0.930 5.930 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.092 3.908 28 C 0.110 3.890 29 N -0.290 5.290 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.188 0.812 34 H 0.197 0.803 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.415 24.047 3.239 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.142 5.142 3 C -0.050 4.050 4 C -0.214 4.214 5 C 0.061 3.939 6 O 0.037 5.963 7 N -0.076 5.076 8 C -0.145 4.145 9 C -0.262 4.262 10 C 0.380 3.620 11 O -0.402 6.402 12 N -0.329 5.329 13 C -0.018 4.018 14 C -0.168 4.168 15 C -0.168 4.168 16 C 0.062 3.938 17 H 0.079 0.921 18 N -0.384 5.384 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.188 4.188 22 N -0.577 5.577 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.032 4.032 28 C -0.077 4.077 29 N -0.109 5.109 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.205 0.795 34 H 0.214 0.786 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.759 23.741 2.810 26.642 hybrid contribution 2.239 -0.175 0.147 2.251 sum -9.519 23.566 2.958 25.588 Atomic orbital electron populations 1.22004 0.73331 1.05048 1.04001 1.48474 1.07362 1.03946 1.54435 1.23026 0.90072 0.93929 0.98016 1.17809 0.88505 0.92029 1.23026 1.21926 0.92855 0.82819 0.96304 1.84795 1.24228 1.19661 1.67568 1.73502 0.89661 1.23606 1.20835 1.24915 1.01567 0.87209 1.00838 1.21255 0.92225 0.96005 1.16722 1.16830 0.79560 0.84431 0.81217 1.90838 1.58086 1.55659 1.35641 1.48119 1.34867 1.18476 1.31393 1.21826 0.99579 0.93499 0.86945 1.21860 1.01666 0.96846 0.96388 1.21871 0.99269 0.95430 1.00249 1.20377 0.96665 0.85496 0.91259 0.92143 1.42727 1.10655 1.07015 1.77995 1.19107 0.96630 0.87194 1.34865 0.88956 1.24680 0.97530 0.95747 1.00886 1.69709 1.35976 1.01254 1.50781 0.86566 0.86643 0.77172 0.78204 1.21097 1.21750 1.20310 1.22692 0.97830 0.80565 1.02065 1.24536 0.95552 0.93097 0.94540 1.77433 1.01629 1.06969 1.24895 0.90115 0.88637 0.89060 0.79474 0.78610 0.91283 0.90155 0.90875 0.91349 0.92099 0.91263 0.80464 0.93012 0.88335 0.91890 0.78129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.45 59.85 0.68 1.16 16 2 N -0.36 -3.60 3.99 -67.54 -0.27 -3.87 16 3 C 0.10 0.91 11.51 -16.46 -0.19 0.72 16 4 C -0.20 -2.46 6.12 -105.09 -0.64 -3.10 16 5 C 0.13 1.56 7.45 -35.25 -0.26 1.30 16 6 O 0.10 1.10 11.17 16.63 0.19 1.29 16 7 N -0.37 -4.30 11.97 30.85 0.37 -3.93 16 8 C 0.03 0.37 10.20 -16.74 -0.17 0.20 16 9 C -0.25 -3.30 5.05 -104.12 -0.53 -3.82 16 10 C 0.59 9.21 6.65 -12.75 -0.08 9.13 16 11 O -0.52 -10.03 13.99 5.22 0.07 -9.96 16 12 N -0.60 -8.57 2.98 -174.48 -0.52 -9.09 16 13 C 0.10 1.13 5.99 -3.71 -0.02 1.11 16 14 C -0.13 -1.43 6.08 -26.61 -0.16 -1.59 16 15 C -0.13 -1.83 5.36 -26.69 -0.14 -1.98 16 16 C 0.17 3.18 2.91 -68.03 -0.20 2.98 16 17 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 18 N -0.74 -16.95 4.93 -53.52 -0.26 -17.21 16 19 C -0.25 -6.92 10.41 -15.06 -0.16 -7.07 16 20 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 21 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 22 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 23 Si 0.88 21.80 27.74 -169.99 -4.71 17.08 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 27 C 0.09 1.62 6.00 -3.93 -0.02 1.60 16 28 C 0.11 1.63 10.95 -16.96 -0.19 1.44 16 29 N -0.29 -4.13 12.50 30.87 0.39 -3.74 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.19 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.77 5.23 -51.93 -0.27 0.50 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.36 8.06 5.66 -40.82 -0.23 7.83 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.10 2.06 6.99 -51.93 -0.36 1.70 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.20 3.36 5.41 -52.49 -0.28 3.07 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -35.82 372.74 -6.35 -42.18 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.81 Total: 7.92 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.18 Total: 2.19 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: 0.48 Total: -66.32 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.26 Total: -8.67 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.82 -6.35 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999792710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.867 kcal (2) G-P(sol) polarization free energy of solvation -35.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds