Wall clock time and date at job start Wed Apr 1 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34457 * 125.77018 * 2 1 4 4 C 1.38069 * 107.39469 * 179.97438 * 3 2 1 5 5 C 1.47348 * 126.41349 * 179.97438 * 4 3 2 6 6 O 1.34262 * 127.19461 * 5.73475 * 5 4 3 7 7 N 1.20733 * 111.95238 * 180.25725 * 6 5 4 8 8 C 1.29882 * 112.81513 * 0.02562 * 7 6 5 9 9 C 1.39926 * 127.19677 * 186.04814 * 5 4 3 10 10 C 1.46914 * 128.39783 * 359.72086 * 9 5 4 11 11 O 1.21664 * 119.99985 * 49.08311 * 10 9 5 12 12 N 1.34781 * 119.99957 * 229.09035 * 10 9 5 13 13 C 1.46926 * 120.63197 * 5.35608 * 12 10 9 14 14 C 1.53189 * 108.77463 * 126.37276 * 13 12 10 15 15 C 1.53036 * 109.31645 * 54.63586 * 14 13 12 16 16 C 1.53041 * 109.53659 * 298.63417 * 15 14 13 17 17 H 1.09000 * 109.50091 * 301.38164 * 16 15 14 18 18 N 1.46502 * 109.49863 * 181.31422 * 16 15 14 19 19 C 1.36938 * 119.99996 * 154.99846 * 18 16 15 20 20 H 1.08003 * 120.00019 * 0.02562 * 19 18 16 21 21 C 1.38809 * 119.99733 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99595 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00412 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47005 * 89.99160 * 23 21 19 25 25 H 1.48494 * 109.47155 * 209.99634 * 23 21 19 26 26 H 1.48502 * 109.46790 * 329.99907 * 23 21 19 27 27 C 1.46929 * 120.63059 * 185.08012 * 12 10 9 28 28 C 1.41302 * 107.17660 * 0.24292 * 4 3 2 29 29 N 1.30488 * 108.05553 * 359.58920 * 28 4 3 30 30 H 1.09001 * 109.46693 * 90.00128 * 1 2 3 31 31 H 1.09000 * 109.47078 * 210.00581 * 1 2 3 32 32 H 1.09000 * 109.47074 * 330.00671 * 1 2 3 33 33 H 1.08006 * 126.30309 * 0.02562 * 3 2 1 34 34 H 1.07992 * 126.78955 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.58826 * 246.16232 * 13 12 10 36 36 H 1.09004 * 109.58613 * 6.44183 * 13 12 10 37 37 H 1.09006 * 109.49583 * 174.59133 * 14 13 12 38 38 H 1.09000 * 109.49736 * 294.67873 * 14 13 12 39 39 H 1.08994 * 109.45698 * 58.65225 * 15 14 13 40 40 H 1.09000 * 109.46349 * 178.61723 * 15 14 13 41 41 H 0.96994 * 119.99835 * 334.99823 * 18 16 15 42 42 H 0.97003 * 119.99688 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.58078 * 353.41671 * 27 12 10 44 44 H 1.08998 * 109.58949 * 113.84061 * 27 12 10 45 45 H 1.07999 * 125.97662 * 179.75632 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.0909 0.0000 4 6 3.5613 0.6557 0.0006 5 6 4.7652 1.5053 0.0003 6 8 4.8147 2.8428 0.1062 7 7 5.9482 3.2568 0.0695 8 6 6.8265 2.3091 -0.0629 9 6 6.0954 1.0874 -0.1166 10 6 6.6131 -0.2801 -0.2599 11 8 6.1336 -1.0280 -1.0911 12 7 7.6190 -0.7060 0.5296 13 6 8.1295 0.1425 1.6150 14 6 8.0940 -0.6549 2.9225 15 6 8.8604 -1.9664 2.7366 16 6 8.1890 -2.8010 1.6435 17 1 7.1537 -2.9989 1.9211 18 7 8.9047 -4.0698 1.4880 19 6 8.2550 -5.1652 0.9850 20 1 7.2150 -5.0938 0.7025 21 6 8.9333 -6.3672 0.8372 22 7 8.3089 -7.4200 0.3532 23 14 10.7322 -6.4908 1.3250 24 1 10.8319 -6.8954 2.7503 25 1 11.4073 -7.5036 0.4744 26 1 11.3874 -5.1712 1.1381 27 6 8.2219 -2.0302 0.3250 28 6 3.5317 -0.7570 -0.0048 29 7 2.2829 -1.1354 0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.9185 2.1186 0.0004 34 1 7.8987 2.4244 -0.1200 35 1 9.1552 0.4389 1.3955 36 1 7.5047 1.0307 1.7091 37 1 8.5588 -0.0713 3.7172 38 1 7.0594 -0.8725 3.1879 39 1 9.8883 -1.7483 2.4471 40 1 8.8576 -2.5246 3.6728 41 1 9.8388 -4.1339 1.7413 42 1 8.7828 -8.2601 0.2503 43 1 7.6565 -2.5763 -0.4302 44 1 9.2553 -1.9147 -0.0019 45 1 4.3922 -1.4096 -0.0095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999792710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:28 Heat of formation + Delta-G solvation = 107.410969 kcal Electronic energy + Delta-G solvation = -30497.573527 eV Core-core repulsion = 26327.155571 eV Total energy + Delta-G solvation = -4170.417956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -45.90075 -42.28880 -41.14991 -38.76612 -36.36599 -35.14229 -34.72520 -33.87680 -33.33216 -32.92701 -30.83929 -30.30424 -27.86456 -27.12684 -25.70038 -24.93390 -24.01260 -23.12336 -22.41165 -21.83220 -21.60856 -20.27808 -19.53604 -19.02627 -18.73667 -18.27880 -17.16004 -17.02592 -16.71388 -16.51565 -16.40818 -15.95671 -15.60951 -15.45010 -15.13115 -15.00689 -14.73542 -14.43655 -14.26209 -14.05373 -13.91064 -13.79959 -13.71519 -13.34877 -13.22899 -12.95656 -12.68350 -12.51130 -12.16829 -11.96066 -11.91435 -11.88372 -11.80811 -11.47361 -11.42073 -11.33669 -11.10988 -10.98882 -10.64905 -9.85168 -9.27100 -9.17726 -8.02820 -5.39137 -0.26532 0.79656 0.88364 1.34905 1.37893 1.43570 1.50403 1.56974 1.70327 1.86857 2.15324 2.48690 3.16393 3.20614 3.27884 3.52800 3.61994 3.77696 3.82484 3.91935 4.01001 4.05902 4.10827 4.19291 4.28591 4.37050 4.41728 4.43926 4.59936 4.61189 4.62367 4.70558 4.72767 4.85095 4.87035 4.91860 5.03063 5.13138 5.25447 5.37298 5.44345 5.48683 5.76454 5.86674 6.20626 6.36440 6.44020 7.04397 7.07306 7.12868 7.78763 8.01223 9.19047 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.003233 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.090927 B = 8657.462969 C =10285.349721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.358 5.358 3 C 0.133 3.867 4 C -0.229 4.229 5 C 0.138 3.862 6 O 0.105 5.895 7 N -0.377 5.377 8 C 0.053 3.947 9 C -0.278 4.278 10 C 0.591 3.409 11 O -0.575 6.575 12 N -0.593 5.593 13 C 0.100 3.900 14 C -0.122 4.122 15 C -0.120 4.120 16 C 0.169 3.831 17 H 0.028 0.972 18 N -0.742 5.742 19 C -0.237 4.237 20 H 0.044 0.956 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.963 3.037 24 H -0.275 1.275 25 H -0.298 1.298 26 H -0.244 1.244 27 C 0.107 3.893 28 C 0.088 3.912 29 N -0.333 5.333 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.242 0.758 34 H 0.228 0.772 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.371 0.629 42 H 0.258 0.742 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 28.623 4.997 30.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.135 5.135 3 C -0.020 4.020 4 C -0.242 4.242 5 C 0.071 3.929 6 O 0.047 5.953 7 N -0.084 5.084 8 C -0.127 4.127 9 C -0.286 4.286 10 C 0.380 3.620 11 O -0.455 6.455 12 N -0.324 5.324 13 C -0.021 4.021 14 C -0.161 4.161 15 C -0.159 4.159 16 C 0.060 3.940 17 H 0.046 0.954 18 N -0.386 5.386 19 C -0.367 4.367 20 H 0.062 0.938 21 C -0.256 4.256 22 N -0.636 5.636 23 Si 0.789 3.211 24 H -0.201 1.201 25 H -0.225 1.225 26 H -0.168 1.168 27 C -0.018 4.018 28 C -0.099 4.099 29 N -0.153 5.153 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.152 0.848 33 H 0.258 0.742 34 H 0.244 0.756 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.205 0.795 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.609 28.400 4.614 30.666 hybrid contribution 1.605 -1.557 -0.426 2.276 sum -9.004 26.844 4.188 28.622 Atomic orbital electron populations 1.22492 0.70320 1.07013 1.05568 1.48891 1.08895 1.03046 1.52662 1.23776 0.88403 0.95541 0.94245 1.17923 0.90240 0.90831 1.25231 1.21938 0.92650 0.83270 0.95036 1.84806 1.24281 1.18632 1.67612 1.73486 0.89778 1.23648 1.21500 1.25273 1.02720 0.85550 0.99136 1.21006 0.93220 0.95122 1.19229 1.17206 0.79058 0.85239 0.80499 1.90817 1.59527 1.57318 1.37877 1.48110 1.34527 1.17502 1.32288 1.22181 1.01511 0.93195 0.85189 1.21864 1.00806 0.95612 0.97780 1.21794 1.00184 0.95984 0.97905 1.20545 0.95254 0.84738 0.93469 0.95410 1.42628 1.10998 1.07208 1.77734 1.18958 0.94950 0.89093 1.33744 0.93778 1.25616 1.03322 0.95117 1.01561 1.69926 1.38443 1.02059 1.53158 0.85299 0.79659 0.78362 0.77743 1.20090 1.22509 1.16789 1.22164 0.97691 0.82055 0.99938 1.24133 0.95107 0.94421 0.96218 1.77317 1.02000 1.09708 1.26300 0.88703 0.89043 0.84783 0.74177 0.75557 0.88166 0.88297 0.86777 0.92751 0.89994 0.91317 0.79475 0.93298 0.93271 0.90627 0.81609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 11.45 127.77 1.46 2.09 16 2 N -0.36 -6.65 3.99 -367.58 -1.47 -8.12 16 3 C 0.13 2.08 11.51 84.25 0.97 3.05 16 4 C -0.23 -5.63 6.12 -20.17 -0.12 -5.75 16 5 C 0.14 3.26 7.45 25.08 0.19 3.45 16 6 O 0.10 2.11 11.17 69.75 0.78 2.89 16 7 N -0.38 -7.67 11.97 -56.82 -0.68 -8.35 16 8 C 0.05 0.99 10.20 86.04 0.88 1.87 16 9 C -0.28 -7.05 5.05 -19.54 -0.10 -7.15 16 10 C 0.59 19.25 6.65 86.51 0.58 19.83 16 11 O -0.57 -24.24 13.99 -4.23 -0.06 -24.30 16 12 N -0.59 -17.18 2.98 -824.17 -2.45 -19.64 16 13 C 0.10 1.87 5.99 86.36 0.52 2.38 16 14 C -0.12 -2.35 6.08 30.67 0.19 -2.16 16 15 C -0.12 -3.15 5.36 30.62 0.16 -2.98 16 16 C 0.17 6.44 2.91 44.93 0.13 6.57 16 17 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 18 N -0.74 -34.59 4.93 -323.24 -1.59 -36.19 16 19 C -0.24 -13.96 10.41 84.03 0.87 -13.08 16 20 H 0.04 2.96 8.06 -2.91 -0.02 2.94 16 21 C -0.06 -3.92 5.50 84.86 0.47 -3.45 16 22 N -0.99 -65.30 13.97 21.65 0.30 -64.99 16 23 Si 0.96 45.52 27.74 68.60 1.90 47.43 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.24 -10.08 6.52 99.48 0.65 -9.43 16 27 C 0.11 3.91 6.00 86.22 0.52 4.43 16 28 C 0.09 2.84 10.95 85.65 0.94 3.78 16 29 N -0.33 -10.08 12.50 -56.25 -0.70 -10.79 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.24 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.23 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 1.54 5.23 -2.38 -0.01 1.53 16 37 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.37 15.98 5.66 -92.71 -0.52 15.45 16 42 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 43 H 0.05 2.28 6.99 -2.39 -0.02 2.26 16 44 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.17 6.46 5.41 -2.91 -0.02 6.45 16 Total: -1.00 -88.27 372.74 4.13 -84.14 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.46 Total: 25.05 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 7.65 Total: 12.87 kcal Atomic # 7 Polarization: -141.47 SS G_CDS: -6.59 Total: -148.07 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.72 Total: -21.41 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.43 kcal Total: -88.27 4.13 -84.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999792710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.547 kcal (2) G-P(sol) polarization free energy of solvation -88.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds