Wall clock time and date at job start Wed Apr 1 2020 04:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99583 * 2 1 4 4 O 1.21530 * 119.99611 * 174.54368 * 3 2 1 5 5 C 1.47991 * 119.99992 * 354.81226 * 3 2 1 6 6 C 1.39645 * 119.95593 * 335.56303 * 5 3 2 7 7 C 1.37672 * 120.04838 * 179.76175 * 6 5 3 8 8 C 1.40041 * 119.94977 * 0.53817 * 7 6 5 9 9 N 1.36248 * 120.04509 * 179.69636 * 8 7 6 10 10 N 1.28994 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.34777 * 119.99948 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99859 * 180.02562 * 11 10 9 13 13 O 1.21557 * 120.00026 * 0.02562 * 11 10 9 14 14 C 1.40046 * 119.90561 * 359.72428 * 8 7 6 15 15 C 1.37658 * 119.95367 * 359.97438 * 14 8 7 16 16 C 1.46492 * 120.00162 * 179.97438 * 2 1 3 17 17 C 1.53783 * 113.61572 * 37.50483 * 16 2 1 18 18 C 1.53774 * 87.08212 * 220.01773 * 17 16 2 19 19 N 1.46502 * 113.69282 * 139.99215 * 18 17 16 20 20 C 1.36930 * 120.00298 * 107.46620 * 19 18 17 21 21 H 1.07995 * 120.00075 * 359.97438 * 20 19 18 22 22 C 1.38820 * 120.00328 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00116 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99452 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47180 * 90.00570 * 24 22 20 26 26 H 1.48505 * 109.47049 * 209.99942 * 24 22 20 27 27 H 1.48494 * 109.47512 * 330.00379 * 24 22 20 28 28 C 1.53782 * 113.61682 * 300.00507 * 16 2 1 29 29 H 1.09009 * 109.46825 * 95.77987 * 1 2 3 30 30 H 1.09002 * 109.47037 * 215.77773 * 1 2 3 31 31 H 1.08995 * 109.47555 * 335.77934 * 1 2 3 32 32 H 1.08001 * 119.97855 * 0.02562 * 6 5 3 33 33 H 1.07993 * 120.02524 * 180.25684 * 7 6 5 34 34 H 0.97005 * 120.00060 * 0.02562 * 12 11 10 35 35 H 0.96996 * 119.99893 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.01998 * 179.97438 * 14 8 7 37 37 H 1.08003 * 119.97401 * 180.02562 * 15 14 8 38 38 H 1.09005 * 112.85194 * 168.80569 * 16 2 1 39 39 H 1.08999 * 113.61048 * 334.56459 * 17 16 2 40 40 H 1.08997 * 113.61640 * 105.46591 * 17 16 2 41 41 H 1.09006 * 113.61848 * 270.88073 * 18 17 16 42 42 H 0.97005 * 119.99806 * 287.46340 * 19 18 17 43 43 H 0.97003 * 119.99972 * 179.97438 * 23 22 20 44 44 H 1.09000 * 113.61554 * 254.52861 * 28 16 2 45 45 H 1.08997 * 113.61478 * 25.43140 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3500 1.1696 0.1001 5 6 1.4033 2.4462 -0.1159 6 6 0.1440 2.4742 -0.7188 7 6 -0.5440 3.6621 -0.8232 8 6 0.0248 4.8448 -0.3344 9 7 -0.6518 6.0225 -0.4423 10 7 -1.8172 6.0486 -0.9945 11 6 -2.4867 7.2135 -1.1007 12 7 -3.7046 7.2407 -1.6773 13 8 -1.9920 8.2397 -0.6766 14 6 1.2902 4.8153 0.2649 15 6 1.9720 3.6243 0.3729 16 6 2.1975 -1.2686 0.0006 17 6 1.5375 -2.3615 -0.8568 18 6 1.9130 -3.3523 0.2576 19 7 0.8730 -4.3456 0.5372 20 6 1.0477 -5.6474 0.1502 21 1 1.9519 -5.9419 -0.3616 22 6 0.0620 -6.5884 0.4146 23 7 0.2297 -7.8395 0.0422 24 14 -1.5024 -6.0788 1.2991 25 1 -2.5199 -5.6583 0.3026 26 1 -2.0235 -7.2266 2.0843 27 1 -1.2077 -4.9465 2.2136 28 6 1.8954 -2.1539 1.2212 29 1 -0.3633 -0.1035 -1.0225 30 1 -0.3633 -0.8338 0.6008 31 1 -0.3634 0.9371 0.4216 32 1 -0.2924 1.5627 -1.0996 33 1 -1.5196 3.6827 -1.2857 34 1 -4.0995 6.4217 -2.0154 35 1 -4.1862 8.0791 -1.7541 36 1 1.7307 5.7264 0.6421 37 1 2.9477 3.6012 0.8354 38 1 3.2625 -1.1426 -0.1945 39 1 0.4626 -2.2299 -0.9801 40 1 2.0529 -2.5480 -1.7989 41 1 2.9002 -3.7972 0.1320 42 1 0.0606 -4.0810 0.9965 43 1 -0.4589 -8.4972 0.2273 44 1 2.6997 -2.1731 1.9565 45 1 0.9183 -1.9657 1.6659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999905763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:51 Heat of formation + Delta-G solvation = 93.017554 kcal Electronic energy + Delta-G solvation = -28588.050659 eV Core-core repulsion = 24417.008558 eV Total energy + Delta-G solvation = -4171.042101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.14575 -40.54966 -39.47114 -38.21367 -36.80626 -35.28642 -34.30156 -33.39720 -32.02277 -31.67154 -30.57906 -28.05642 -27.53434 -25.37237 -24.97134 -23.72855 -23.10506 -22.15730 -20.71125 -20.09319 -19.25430 -18.76007 -17.75661 -17.58339 -17.42200 -16.97367 -16.48298 -16.10513 -15.95185 -15.53785 -15.21318 -14.89646 -14.77967 -14.43956 -14.16785 -14.11606 -14.01779 -13.47387 -13.28593 -13.03360 -12.80314 -12.52282 -12.28263 -12.11417 -11.97705 -11.83499 -11.70381 -11.23641 -11.08146 -10.80755 -10.61596 -10.33001 -10.31042 -10.23485 -9.98703 -9.65890 -9.65369 -9.61009 -9.32201 -9.00240 -8.71491 -7.37449 -5.85946 -3.22492 -1.11881 0.73059 0.93717 2.15752 2.39647 2.69715 2.90671 3.28696 3.30265 3.31636 3.37873 3.76339 4.02298 4.15199 4.28190 4.49575 4.56473 4.65480 4.82279 4.85671 4.92111 4.94636 5.10939 5.18769 5.27764 5.32425 5.36935 5.42240 5.54068 5.56388 5.65690 5.67205 5.67781 5.93373 6.03617 6.05499 6.09807 6.13335 6.18722 6.37549 6.53184 6.64109 6.79196 6.87586 7.19408 7.86006 7.89848 7.92740 8.33271 9.10188 9.82405 10.01472 11.32043 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.001968 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.907174 B =14222.440160 C =15630.477985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.588 5.588 3 C 0.549 3.451 4 O -0.529 6.529 5 C -0.069 4.069 6 C -0.123 4.123 7 C -0.070 4.070 8 C 0.018 3.982 9 N -0.066 5.066 10 N -0.319 5.319 11 C 0.651 3.349 12 N -0.820 5.820 13 O -0.552 6.552 14 C -0.028 4.028 15 C -0.080 4.080 16 C 0.117 3.883 17 C -0.174 4.174 18 C 0.176 3.824 19 N -0.733 5.733 20 C -0.251 4.251 21 H 0.092 0.908 22 C 0.006 3.994 23 N -0.930 5.930 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.166 4.166 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.410 0.590 35 H 0.419 0.581 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 27.695 -2.447 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.319 5.319 3 C 0.337 3.663 4 O -0.406 6.406 5 C -0.074 4.074 6 C -0.142 4.142 7 C -0.094 4.094 8 C -0.089 4.089 9 N 0.040 4.960 10 N -0.222 5.222 11 C 0.347 3.653 12 N -0.389 5.389 13 O -0.422 6.422 14 C -0.052 4.052 15 C -0.100 4.100 16 C 0.014 3.986 17 C -0.216 4.216 18 C 0.064 3.936 19 N -0.373 5.373 20 C -0.381 4.381 21 H 0.110 0.890 22 C -0.190 4.190 23 N -0.577 5.577 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.206 4.206 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.177 0.823 33 H 0.168 0.832 34 H 0.240 0.760 35 H 0.252 0.748 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.179 28.280 -2.197 28.671 hybrid contribution -1.919 0.137 0.299 1.947 sum -6.097 28.416 -1.898 29.125 Atomic orbital electron populations 1.22451 0.79894 1.04013 1.02195 1.47766 1.06930 1.05849 1.71372 1.18333 0.87173 0.83467 0.77359 1.90795 1.13449 1.86999 1.49368 1.20503 0.94567 0.94504 0.97870 1.22212 0.93674 0.99746 0.98533 1.22162 1.00509 0.91667 0.95065 1.19320 0.96048 0.88843 1.04691 1.72604 1.00751 1.26076 0.96552 1.72216 1.05384 1.29582 1.15003 1.17550 0.83189 0.85096 0.79459 1.42734 1.17855 1.15178 1.63112 1.90988 1.67706 1.36117 1.47416 1.21246 0.91186 0.99028 0.93699 1.21267 1.00511 0.90099 0.98084 1.22696 0.97450 0.79778 0.98681 1.24303 1.01045 0.96203 1.00022 1.21316 0.93791 0.86757 0.91770 1.42692 1.18458 1.06564 1.69539 1.19137 1.04171 0.83171 1.31576 0.89006 1.24705 0.98271 0.95334 1.00707 1.69697 1.34920 1.01425 1.51699 0.86557 0.84631 0.77552 0.79794 1.21050 1.21653 1.20354 1.23960 1.01985 0.97191 0.97471 0.91447 0.90188 0.89713 0.82317 0.83232 0.76049 0.74788 0.83188 0.83084 0.86329 0.89923 0.91447 0.89306 0.80508 0.92953 0.91195 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 7.22 59.85 0.43 0.90 16 2 N -0.59 -6.56 3.08 -174.06 -0.54 -7.10 16 3 C 0.55 6.50 7.50 -12.26 -0.09 6.41 16 4 O -0.53 -7.99 16.09 5.34 0.09 -7.90 16 5 C -0.07 -0.61 5.51 -104.85 -0.58 -1.19 16 6 C -0.12 -0.86 7.51 -39.26 -0.29 -1.15 16 7 C -0.07 -0.49 9.47 -39.11 -0.37 -0.86 16 8 C 0.02 0.15 6.68 -84.55 -0.56 -0.41 16 9 N -0.07 -0.66 10.78 32.21 0.35 -0.32 16 10 N -0.32 -2.98 10.04 27.63 0.28 -2.70 16 11 C 0.65 6.38 8.92 -86.92 -0.78 5.61 16 12 N -0.82 -3.82 8.88 27.63 0.25 -3.58 16 13 O -0.55 -7.70 17.48 5.32 0.09 -7.61 16 14 C -0.03 -0.20 9.99 -39.12 -0.39 -0.59 16 15 C -0.08 -0.63 9.57 -39.27 -0.38 -1.01 16 16 C 0.12 1.53 4.19 -67.12 -0.28 1.24 16 17 C -0.17 -2.52 7.36 -25.92 -0.19 -2.71 16 18 C 0.18 3.05 4.48 -67.12 -0.30 2.75 16 19 N -0.73 -16.02 5.21 -52.64 -0.27 -16.30 16 20 C -0.25 -6.72 10.45 -15.06 -0.16 -6.88 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 22 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 23 N -0.93 -28.30 13.97 55.49 0.78 -27.53 16 24 Si 0.88 20.99 27.73 -169.99 -4.71 16.27 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 28 C -0.17 -2.36 7.40 -25.92 -0.19 -2.56 16 29 H 0.07 0.46 7.04 -51.92 -0.37 0.09 16 30 H 0.08 0.72 6.60 -51.93 -0.34 0.37 16 31 H 0.08 0.54 5.11 -51.93 -0.27 0.27 16 32 H 0.16 0.88 4.39 -52.49 -0.23 0.64 16 33 H 0.15 0.83 7.37 -52.49 -0.39 0.44 16 34 H 0.41 0.80 8.93 -40.82 -0.36 0.43 16 35 H 0.42 1.23 8.93 -40.82 -0.36 0.87 16 36 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.15 1.11 7.82 -52.48 -0.41 0.70 16 38 H 0.12 1.64 7.28 -51.93 -0.38 1.26 16 39 H 0.08 1.17 6.79 -51.93 -0.35 0.82 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.58 8.10 -51.93 -0.42 1.16 16 42 H 0.36 7.70 5.79 -40.82 -0.24 7.47 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.10 6.83 -51.93 -0.35 0.75 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -36.36 377.39 -7.57 -43.94 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.33 Total: 7.52 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -4.23 Total: -0.38 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.83 Total: -57.52 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.18 Total: -15.51 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.71 Total: 16.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.36 -7.57 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999905763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.953 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds