Wall clock time and date at job start Wed Apr 1 2020 04:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99583 * 2 1 4 4 O 1.21530 * 119.99611 * 174.54368 * 3 2 1 5 5 C 1.47991 * 119.99992 * 354.81226 * 3 2 1 6 6 C 1.39645 * 119.95593 * 335.56303 * 5 3 2 7 7 C 1.37672 * 120.04838 * 179.76175 * 6 5 3 8 8 C 1.40041 * 119.94977 * 0.53817 * 7 6 5 9 9 N 1.36248 * 120.04509 * 179.69636 * 8 7 6 10 10 N 1.28994 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.34777 * 119.99948 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99859 * 180.02562 * 11 10 9 13 13 O 1.21557 * 120.00026 * 0.02562 * 11 10 9 14 14 C 1.40046 * 119.90561 * 359.72428 * 8 7 6 15 15 C 1.37658 * 119.95367 * 359.97438 * 14 8 7 16 16 C 1.46492 * 120.00162 * 179.97438 * 2 1 3 17 17 C 1.53783 * 113.61572 * 37.50483 * 16 2 1 18 18 C 1.53774 * 87.08212 * 220.01773 * 17 16 2 19 19 N 1.46502 * 113.69282 * 139.99215 * 18 17 16 20 20 C 1.36930 * 120.00298 * 107.46620 * 19 18 17 21 21 H 1.07995 * 120.00075 * 359.97438 * 20 19 18 22 22 C 1.38820 * 120.00328 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00116 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99452 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47180 * 90.00570 * 24 22 20 26 26 H 1.48505 * 109.47049 * 209.99942 * 24 22 20 27 27 H 1.48494 * 109.47512 * 330.00379 * 24 22 20 28 28 C 1.53782 * 113.61682 * 300.00507 * 16 2 1 29 29 H 1.09009 * 109.46825 * 95.77987 * 1 2 3 30 30 H 1.09002 * 109.47037 * 215.77773 * 1 2 3 31 31 H 1.08995 * 109.47555 * 335.77934 * 1 2 3 32 32 H 1.08001 * 119.97855 * 0.02562 * 6 5 3 33 33 H 1.07993 * 120.02524 * 180.25684 * 7 6 5 34 34 H 0.97005 * 120.00060 * 0.02562 * 12 11 10 35 35 H 0.96996 * 119.99893 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.01998 * 179.97438 * 14 8 7 37 37 H 1.08003 * 119.97401 * 180.02562 * 15 14 8 38 38 H 1.09005 * 112.85194 * 168.80569 * 16 2 1 39 39 H 1.08999 * 113.61048 * 334.56459 * 17 16 2 40 40 H 1.08997 * 113.61640 * 105.46591 * 17 16 2 41 41 H 1.09006 * 113.61848 * 270.88073 * 18 17 16 42 42 H 0.97005 * 119.99806 * 287.46340 * 19 18 17 43 43 H 0.97003 * 119.99972 * 179.97438 * 23 22 20 44 44 H 1.09000 * 113.61554 * 254.52861 * 28 16 2 45 45 H 1.08997 * 113.61478 * 25.43140 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3500 1.1696 0.1001 5 6 1.4033 2.4462 -0.1159 6 6 0.1440 2.4742 -0.7188 7 6 -0.5440 3.6621 -0.8232 8 6 0.0248 4.8448 -0.3344 9 7 -0.6518 6.0225 -0.4423 10 7 -1.8172 6.0486 -0.9945 11 6 -2.4867 7.2135 -1.1007 12 7 -3.7046 7.2407 -1.6773 13 8 -1.9920 8.2397 -0.6766 14 6 1.2902 4.8153 0.2649 15 6 1.9720 3.6243 0.3729 16 6 2.1975 -1.2686 0.0006 17 6 1.5375 -2.3615 -0.8568 18 6 1.9130 -3.3523 0.2576 19 7 0.8730 -4.3456 0.5372 20 6 1.0477 -5.6474 0.1502 21 1 1.9519 -5.9419 -0.3616 22 6 0.0620 -6.5884 0.4146 23 7 0.2297 -7.8395 0.0422 24 14 -1.5024 -6.0788 1.2991 25 1 -2.5199 -5.6583 0.3026 26 1 -2.0235 -7.2266 2.0843 27 1 -1.2077 -4.9465 2.2136 28 6 1.8954 -2.1539 1.2212 29 1 -0.3633 -0.1035 -1.0225 30 1 -0.3633 -0.8338 0.6008 31 1 -0.3634 0.9371 0.4216 32 1 -0.2924 1.5627 -1.0996 33 1 -1.5196 3.6827 -1.2857 34 1 -4.0995 6.4217 -2.0154 35 1 -4.1862 8.0791 -1.7541 36 1 1.7307 5.7264 0.6421 37 1 2.9477 3.6012 0.8354 38 1 3.2625 -1.1426 -0.1945 39 1 0.4626 -2.2299 -0.9801 40 1 2.0529 -2.5480 -1.7989 41 1 2.9002 -3.7972 0.1320 42 1 0.0606 -4.0810 0.9965 43 1 -0.4589 -8.4972 0.2273 44 1 2.6997 -2.1731 1.9565 45 1 0.9183 -1.9657 1.6659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999905763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:50 Heat of formation + Delta-G solvation = 64.673581 kcal Electronic energy + Delta-G solvation = -28589.279746 eV Core-core repulsion = 24417.008558 eV Total energy + Delta-G solvation = -4172.271188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70546 -40.25654 -39.04956 -38.61918 -37.92291 -36.30641 -35.19192 -34.49923 -33.52812 -31.01514 -30.46090 -28.91836 -27.79505 -26.87421 -26.79225 -24.88997 -23.06303 -22.63277 -22.12228 -21.01646 -19.98695 -19.79747 -18.97704 -18.06292 -17.85375 -17.59691 -17.38366 -16.46508 -16.42186 -16.27200 -15.82896 -15.66822 -15.47444 -15.36358 -14.90940 -14.75469 -14.69632 -14.27465 -14.12082 -13.83117 -13.73006 -13.63677 -13.31440 -13.03943 -13.00374 -12.65845 -12.48570 -12.46739 -12.29008 -12.04995 -11.93659 -11.81653 -11.30186 -11.08048 -10.94183 -10.89974 -10.31033 -10.12568 -9.97519 -9.38683 -9.09144 -8.29071 -7.55703 -5.39443 -1.79792 0.51526 0.66141 0.81645 1.22141 1.33099 1.59337 1.62778 1.87432 2.40848 2.59330 2.72608 3.04877 3.21336 3.42552 3.54021 3.59436 3.75219 3.82466 3.86359 4.25231 4.28007 4.40504 4.48344 4.52001 4.63226 4.70222 4.73050 4.80201 4.88359 4.92129 5.03107 5.10004 5.13986 5.26391 5.34821 5.36957 5.59859 5.87953 5.99985 6.09874 6.31651 6.34762 6.44156 6.75657 6.81677 6.98670 7.11567 7.51547 7.76549 8.17099 8.60127 9.94575 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.001968 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.907174 B =14222.440160 C =15630.477985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.583 3.417 4 O -0.621 6.621 5 C -0.396 4.396 6 C -0.030 4.030 7 C -0.280 4.280 8 C 0.094 3.906 9 N -0.478 5.478 10 N -0.640 5.640 11 C 0.574 3.426 12 N -0.851 5.851 13 O -0.768 6.768 14 C -0.275 4.275 15 C -0.012 4.012 16 C 0.097 3.903 17 C -0.152 4.152 18 C 0.110 3.890 19 N -0.536 5.536 20 C 0.423 3.577 21 H 0.268 0.732 22 C -0.083 4.083 23 N -0.475 5.475 24 Si 0.933 3.067 25 H -0.239 1.239 26 H -0.241 1.241 27 H -0.215 1.215 28 C -0.162 4.162 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.394 0.606 35 H 0.393 0.607 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.206 0.794 42 H 0.431 0.569 43 H 0.382 0.618 44 H 0.099 0.901 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -79.153 4.593 79.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C 0.382 3.618 4 O -0.507 6.507 5 C -0.405 4.405 6 C -0.052 4.052 7 C -0.304 4.304 8 C -0.069 4.069 9 N -0.305 5.305 10 N -0.520 5.520 11 C 0.272 3.728 12 N -0.419 5.419 13 O -0.664 6.664 14 C -0.299 4.299 15 C -0.034 4.034 16 C -0.007 4.007 17 C -0.190 4.190 18 C 0.008 3.992 19 N -0.130 5.130 20 C 0.242 3.758 21 H 0.284 0.716 22 C -0.324 4.324 23 N -0.100 5.100 24 Si 0.749 3.251 25 H -0.162 1.162 26 H -0.164 1.164 27 H -0.138 1.138 28 C -0.201 4.201 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.221 0.779 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.223 0.777 42 H 0.275 0.725 43 H 0.202 0.798 44 H 0.118 0.882 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.494 -78.051 4.859 78.395 hybrid contribution -1.771 1.629 0.300 2.425 sum 3.723 -76.422 5.160 76.686 Atomic orbital electron populations 1.22301 0.79070 1.03901 1.01977 1.47352 1.06962 1.04501 1.75212 1.18176 0.85661 0.84158 0.73797 1.90504 1.15966 1.88202 1.56034 1.18265 1.01027 0.92609 1.28574 1.21192 0.92739 0.95699 0.95537 1.20688 1.00762 0.94480 1.14449 1.18969 0.95073 0.90435 1.02421 1.71581 1.08236 1.25563 1.25074 1.71488 1.11896 1.23480 1.45120 1.18494 0.84398 0.86895 0.83013 1.41889 1.18754 1.11967 1.69272 1.90397 1.72486 1.40413 1.63133 1.19726 0.97870 0.95847 1.16412 1.20178 0.95387 0.91856 0.95971 1.22525 0.98224 0.81658 0.98311 1.24053 1.04186 0.91709 0.99101 1.23901 0.92764 0.85852 0.96644 1.47523 1.20587 1.08323 1.36527 1.25786 0.97586 0.80203 0.72272 0.71611 1.27287 1.05915 0.95502 1.03705 1.69595 1.34907 1.02522 1.02976 0.85338 0.75232 0.83920 0.80618 1.16199 1.16354 1.13753 1.23999 1.05538 0.92570 0.98032 0.91618 0.87642 0.92449 0.84164 0.91641 0.77883 0.77805 0.93183 0.89484 0.87711 0.87131 0.86723 0.77697 0.72510 0.79754 0.88195 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 7.22 127.77 0.92 2.36 16 2 N -0.61 -15.42 3.08 -822.89 -2.54 -17.96 16 3 C 0.58 25.86 7.50 86.83 0.65 26.51 16 4 O -0.62 -30.45 16.09 -3.81 -0.06 -30.51 16 5 C -0.40 -22.83 5.51 -20.01 -0.11 -22.94 16 6 C -0.03 -1.75 7.51 22.48 0.17 -1.58 16 7 C -0.28 -20.54 9.47 22.57 0.21 -20.33 16 8 C 0.09 7.88 6.68 39.33 0.26 8.14 16 9 N -0.48 -44.87 10.78 -52.01 -0.56 -45.43 16 10 N -0.64 -57.44 10.04 -184.77 -1.85 -59.29 16 11 C 0.57 49.30 8.92 179.05 1.60 50.89 16 12 N -0.85 -55.92 8.88 -184.77 -1.64 -57.56 16 13 O -0.77 -72.61 17.48 -3.90 -0.07 -72.68 16 14 C -0.27 -21.41 9.99 22.57 0.23 -21.19 16 15 C -0.01 -0.79 9.57 22.47 0.21 -0.57 16 16 C 0.10 0.80 4.19 45.52 0.19 0.99 16 17 C -0.15 1.20 7.36 31.12 0.23 1.42 16 18 C 0.11 -2.19 4.48 45.52 0.20 -1.99 16 19 N -0.54 14.72 5.21 -320.44 -1.67 13.05 16 20 C 0.42 -13.98 10.45 84.04 0.88 -13.10 16 21 H 0.27 -11.10 8.06 -2.91 -0.02 -11.13 16 22 C -0.08 2.29 5.50 84.87 0.47 2.75 16 23 N -0.48 11.30 13.97 21.65 0.30 11.61 16 24 Si 0.93 -18.82 27.73 68.60 1.90 -16.92 16 25 H -0.24 3.54 7.11 99.48 0.71 4.25 16 26 H -0.24 3.63 7.11 99.48 0.71 4.34 16 27 H -0.21 4.42 6.52 99.48 0.65 5.07 16 28 C -0.16 0.85 7.40 31.12 0.23 1.08 16 29 H 0.07 1.18 7.04 -2.38 -0.02 1.17 16 30 H 0.11 0.69 6.60 -2.39 -0.02 0.68 16 31 H 0.06 1.93 5.11 -2.39 -0.01 1.92 16 32 H 0.14 6.22 4.39 -2.91 -0.01 6.20 16 33 H 0.07 4.96 7.37 -2.91 -0.02 4.94 16 34 H 0.39 22.93 8.93 -92.70 -0.83 22.10 16 35 H 0.39 22.64 8.93 -92.71 -0.83 21.81 16 36 H 0.05 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.09 5.46 7.82 -2.91 -0.02 5.44 16 38 H 0.10 1.42 7.28 -2.38 -0.02 1.40 16 39 H 0.11 -0.92 6.79 -2.39 -0.02 -0.93 16 40 H 0.11 -1.07 8.14 -2.39 -0.02 -1.09 16 41 H 0.21 -5.80 8.10 -2.38 -0.02 -5.82 16 42 H 0.43 -11.55 5.79 -92.70 -0.54 -12.09 16 43 H 0.38 -9.25 8.31 -92.71 -0.77 -10.02 16 44 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.11 -0.58 6.83 -2.39 -0.02 -0.60 16 Total: -1.00 -221.07 377.39 -1.00 -222.07 By element: Atomic # 1 Polarization: 42.32 SS G_CDS: -1.16 Total: 41.16 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 6.34 Total: 12.46 kcal Atomic # 7 Polarization: -147.62 SS G_CDS: -7.96 Total: -155.58 kcal Atomic # 8 Polarization: -103.06 SS G_CDS: -0.13 Total: -103.19 kcal Atomic # 14 Polarization: -18.82 SS G_CDS: 1.90 Total: -16.92 kcal Total: -221.07 -1.00 -222.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999905763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 286.742 kcal (2) G-P(sol) polarization free energy of solvation -221.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -222.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds