Wall clock time and date at job start Wed Apr 1 2020 03:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35972 * 126.36335 * 2 1 4 4 N 1.30212 * 110.06357 * 179.48359 * 3 2 1 5 5 C 1.35725 * 109.68000 * 0.58012 * 4 3 2 6 6 N 1.33113 * 133.20022 * 179.32421 * 5 4 3 7 7 C 1.31840 * 121.82679 * 180.02562 * 6 5 4 8 8 O 1.35734 * 119.27098 * 179.97438 * 7 6 5 9 9 C 1.39125 * 121.45310 * 0.02562 * 7 6 5 10 10 C 1.39569 * 119.23089 * 359.97438 * 9 7 6 11 11 C 1.47913 * 121.00471 * 179.97438 * 10 9 7 12 12 O 1.21547 * 119.99517 * 143.08810 * 11 10 9 13 13 N 1.34771 * 120.00130 * 323.08964 * 11 10 9 14 14 C 1.46500 * 120.00142 * 180.02562 * 13 11 10 15 15 C 1.53037 * 109.46096 * 205.00068 * 14 13 11 16 16 C 1.53189 * 109.31607 * 178.61198 * 15 14 13 17 17 N 1.46931 * 108.89134 * 54.55732 * 16 15 14 18 18 C 1.36940 * 120.62751 * 126.46464 * 17 16 15 19 19 H 1.08004 * 120.00028 * 331.24057 * 18 17 16 20 20 C 1.38813 * 119.99968 * 151.23674 * 18 17 16 21 21 N 1.31616 * 120.00238 * 343.72479 * 20 18 17 22 22 Si 1.86804 * 119.99822 * 163.71695 * 20 18 17 23 23 H 1.48496 * 109.47110 * 90.00517 * 22 20 18 24 24 H 1.48505 * 109.46905 * 210.00283 * 22 20 18 25 25 H 1.48495 * 109.47207 * 330.00501 * 22 20 18 26 26 C 1.46954 * 118.71901 * 306.64481 * 17 16 15 27 27 C 1.53039 * 109.46398 * 84.92550 * 14 13 11 28 28 C 1.37610 * 126.36841 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47136 * 276.41907 * 1 2 3 30 30 H 1.09003 * 109.47470 * 36.41965 * 1 2 3 31 31 H 1.09004 * 109.47222 * 156.42171 * 1 2 3 32 32 H 1.08005 * 124.96419 * 0.02562 * 3 2 1 33 33 H 0.96694 * 113.99703 * 270.02073 * 8 7 6 34 34 H 1.08000 * 120.38273 * 179.97438 * 9 7 6 35 35 H 0.97000 * 119.99933 * 0.02562 * 13 11 10 36 36 H 1.09003 * 109.44560 * 324.96067 * 14 13 11 37 37 H 1.08998 * 109.50336 * 58.65466 * 15 14 13 38 38 H 1.09007 * 109.49611 * 298.55875 * 15 14 13 39 39 H 1.08999 * 109.59349 * 174.41861 * 16 15 14 40 40 H 1.08997 * 109.58707 * 294.70315 * 16 15 14 41 41 H 0.96999 * 120.00552 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.46792 * 293.57627 * 26 17 16 43 43 H 1.08995 * 109.71539 * 173.28635 * 26 17 16 44 44 H 1.08999 * 109.49676 * 301.34165 * 27 14 13 45 45 H 1.09001 * 109.49272 * 61.43860 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0949 0.0000 4 7 3.5209 0.7295 0.0110 5 6 3.6010 -0.6254 0.0059 6 7 4.6234 -1.4777 0.0011 7 6 4.4402 -2.7833 -0.0039 8 8 5.5205 -3.6051 -0.0093 9 6 3.1640 -3.3372 -0.0049 10 6 2.0538 -2.4914 0.0000 11 6 0.6794 -3.0380 -0.0014 12 8 -0.1957 -2.4835 0.6342 13 7 0.3976 -4.1509 -0.7074 14 6 -0.9638 -4.6920 -0.7092 15 6 -0.9163 -6.1910 -1.0140 16 6 -2.3382 -6.7601 -0.9809 17 7 -3.1827 -5.9842 -1.8993 18 6 -3.9118 -6.6108 -2.8745 19 1 -3.5638 -7.5434 -3.2937 20 6 -5.0982 -6.0476 -3.3241 21 7 -5.6891 -5.1070 -2.6182 22 14 -5.8558 -6.6246 -4.9311 23 1 -6.7827 -7.7536 -4.6642 24 1 -6.6062 -5.5049 -5.5547 25 1 -4.7810 -7.0737 -5.8520 26 6 -3.2266 -4.5225 -1.7537 27 6 -1.7948 -3.9784 -1.7781 28 6 2.2810 -1.1081 0.0005 29 1 -0.3633 0.1149 1.0212 30 1 -0.3634 0.8270 -0.6101 31 1 -0.3634 -0.9419 -0.4111 32 1 1.9254 2.1181 0.0004 33 1 5.8320 -3.8393 -0.8942 34 1 3.0339 -4.4094 -0.0095 35 1 1.0961 -4.5936 -1.2143 36 1 -1.4182 -4.5346 0.2690 37 1 -0.3051 -6.6953 -0.2655 38 1 -0.4847 -6.3477 -2.0026 39 1 -2.3214 -7.8041 -1.2938 40 1 -2.7370 -6.6884 0.0310 41 1 -6.5180 -4.7131 -2.9325 42 1 -3.6988 -4.2660 -0.8053 43 1 -3.7966 -4.0881 -2.5749 44 1 -1.8087 -2.9079 -1.5734 45 1 -1.3548 -4.1560 -2.7594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002989986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:32 Heat of formation + Delta-G solvation = 49.533429 kcal Electronic energy + Delta-G solvation = -30358.882749 eV Core-core repulsion = 26185.955034 eV Total energy + Delta-G solvation = -4172.927714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.78010 -40.11165 -39.45830 -37.56554 -36.56701 -34.72602 -34.47864 -32.79111 -31.90586 -30.19626 -29.62585 -29.46179 -27.27821 -25.71853 -24.61944 -23.29784 -22.65984 -22.39062 -21.45452 -20.35870 -19.61278 -18.95966 -18.28765 -17.64952 -17.23353 -16.78904 -16.53394 -15.91994 -15.53373 -15.43619 -14.92606 -14.84971 -14.49014 -14.22702 -13.94900 -13.70605 -13.63527 -13.56087 -13.14391 -12.98154 -12.61170 -12.33587 -12.14840 -11.96268 -11.63338 -11.29539 -11.16079 -11.07818 -10.99624 -10.79767 -10.54043 -10.40385 -10.36522 -10.19114 -9.88031 -9.76238 -9.43097 -9.07601 -8.94092 -8.75649 -8.54161 -6.77790 -5.88148 -3.32108 0.09902 0.76629 2.01783 2.20202 2.64999 2.86642 3.01913 3.31163 3.38622 3.40159 3.43753 3.88984 4.02515 4.38173 4.41309 4.46228 4.57321 4.77087 4.86426 5.09430 5.12101 5.23746 5.29061 5.32318 5.41492 5.45149 5.54970 5.65219 5.81647 5.91183 5.92088 6.07219 6.13054 6.25352 6.41377 6.50010 6.60803 6.62183 6.68058 6.80754 7.04209 7.22145 7.31445 7.35597 7.54807 7.65987 7.70838 7.96679 8.35643 9.11418 9.74160 10.30697 11.20668 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002624 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.029893 B =10667.829206 C =11631.108949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.473 5.473 3 C 0.289 3.711 4 N -0.487 5.487 5 C 0.270 3.730 6 N -0.453 5.453 7 C 0.328 3.672 8 O -0.474 6.474 9 C -0.142 4.142 10 C -0.050 4.050 11 C 0.553 3.447 12 O -0.525 6.525 13 N -0.708 5.708 14 C 0.149 3.851 15 C -0.140 4.140 16 C 0.149 3.851 17 N -0.592 5.592 18 C -0.257 4.257 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.175 3.825 27 C -0.146 4.146 28 C 0.028 3.972 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.227 0.773 33 H 0.402 0.598 34 H 0.157 0.843 35 H 0.398 0.602 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.021 0.979 41 H 0.255 0.745 42 H 0.021 0.979 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.201 7.325 3.493 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.161 5.161 3 C 0.001 3.999 4 N -0.208 5.208 5 C 0.027 3.973 6 N -0.174 5.174 7 C 0.136 3.864 8 O -0.281 6.281 9 C -0.166 4.166 10 C -0.064 4.064 11 C 0.339 3.661 12 O -0.403 6.403 13 N -0.357 5.357 14 C 0.046 3.954 15 C -0.180 4.180 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.386 4.386 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.048 3.952 27 C -0.186 4.186 28 C -0.088 4.088 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.243 0.757 33 H 0.260 0.740 34 H 0.174 0.826 35 H 0.233 0.767 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.712 8.674 4.516 19.363 hybrid contribution -1.463 -1.233 -1.475 2.416 sum 15.249 7.441 3.041 17.238 Atomic orbital electron populations 1.22584 0.73853 1.06226 1.04616 1.45251 1.08514 1.04776 1.57527 1.25709 0.84227 0.94046 0.95899 1.70391 1.18280 1.08817 1.23305 1.18911 0.85207 0.90643 1.02556 1.65845 1.35148 1.03026 1.13391 1.18495 0.85706 0.85049 0.97169 1.84854 1.45985 1.63103 1.34128 1.22094 0.90736 1.01284 1.02480 1.19234 0.94581 0.89819 1.02730 1.18031 0.86736 0.81257 0.80116 1.90768 1.47690 1.58818 1.43013 1.46336 1.13436 1.26871 1.49022 1.21191 0.79696 0.93670 1.00852 1.22356 1.00935 0.93537 1.01137 1.20836 0.88124 0.95258 0.93653 1.44079 1.51295 1.01251 1.34847 1.19151 1.00476 1.07040 1.11958 0.91654 1.25083 0.95726 0.99452 0.99195 1.70016 1.17985 1.29613 1.36893 0.86307 0.79031 0.77831 0.83643 1.21305 1.21534 1.20457 1.20737 0.89842 0.83576 1.01008 1.22582 1.00014 0.98535 0.97495 1.19455 0.93368 0.88922 1.07023 0.89738 0.89792 0.87146 0.75693 0.73989 0.82586 0.76732 0.89585 0.92368 0.91683 0.92185 0.96118 0.93528 0.96072 0.89280 0.93081 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 9.78 59.85 0.59 1.22 16 2 N -0.47 -5.12 3.19 -122.88 -0.39 -5.52 16 3 C 0.29 2.69 12.50 -89.76 -1.12 1.57 16 4 N -0.49 -6.41 11.27 -13.60 -0.15 -6.57 16 5 C 0.27 3.84 8.37 -156.97 -1.31 2.52 16 6 N -0.45 -6.39 10.41 -12.77 -0.13 -6.53 16 7 C 0.33 3.66 7.71 -17.22 -0.13 3.53 16 8 O -0.47 -4.16 13.55 -18.91 -0.26 -4.42 16 9 C -0.14 -1.41 9.36 -38.76 -0.36 -1.77 16 10 C -0.05 -0.60 5.80 -104.71 -0.61 -1.21 16 11 C 0.55 7.27 6.79 -12.30 -0.08 7.19 16 12 O -0.52 -8.22 12.86 5.32 0.07 -8.15 16 13 N -0.71 -8.50 5.02 -54.69 -0.27 -8.77 16 14 C 0.15 2.25 2.42 -67.89 -0.16 2.09 16 15 C -0.14 -2.06 5.55 -26.61 -0.15 -2.21 16 16 C 0.15 2.83 6.51 -3.71 -0.02 2.80 16 17 N -0.59 -13.90 3.00 -172.30 -0.52 -14.41 16 18 C -0.26 -6.70 9.58 -15.06 -0.14 -6.84 16 19 H 0.07 1.67 7.88 -52.48 -0.41 1.25 16 20 C 0.00 0.12 4.93 -17.43 -0.09 0.03 16 21 N -0.90 -25.27 11.21 55.49 0.62 -24.64 16 22 Si 0.90 20.87 29.58 -169.99 -5.03 15.84 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.17 3.93 5.29 -3.70 -0.02 3.91 16 27 C -0.15 -2.58 5.65 -26.61 -0.15 -2.73 16 28 C 0.03 0.36 6.76 -83.67 -0.57 -0.20 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 1.33 4.95 -51.93 -0.26 1.08 16 32 H 0.23 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.40 1.38 9.06 45.56 0.41 1.79 16 34 H 0.16 1.09 7.78 -52.49 -0.41 0.68 16 35 H 0.40 3.69 7.95 -40.82 -0.32 3.37 16 36 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 2.27 6.11 -51.93 -0.32 1.95 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -34.99 369.17 -9.89 -44.89 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.05 Total: 2.81 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -4.34 Total: 9.91 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.85 Total: -66.44 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.19 Total: -12.57 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.99 -9.89 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002989986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.421 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds