Wall clock time and date at job start Wed Apr 1 2020 03:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35972 * 126.36335 * 2 1 4 4 N 1.30212 * 110.06357 * 179.48359 * 3 2 1 5 5 C 1.35725 * 109.68000 * 0.58012 * 4 3 2 6 6 N 1.33113 * 133.20022 * 179.32421 * 5 4 3 7 7 C 1.31840 * 121.82679 * 180.02562 * 6 5 4 8 8 O 1.35734 * 119.27098 * 179.97438 * 7 6 5 9 9 C 1.39125 * 121.45310 * 0.02562 * 7 6 5 10 10 C 1.39569 * 119.23089 * 359.97438 * 9 7 6 11 11 C 1.47913 * 121.00471 * 179.97438 * 10 9 7 12 12 O 1.21547 * 119.99517 * 143.08810 * 11 10 9 13 13 N 1.34771 * 120.00130 * 323.08964 * 11 10 9 14 14 C 1.46500 * 120.00142 * 180.02562 * 13 11 10 15 15 C 1.53037 * 109.46096 * 205.00068 * 14 13 11 16 16 C 1.53189 * 109.31607 * 178.61198 * 15 14 13 17 17 N 1.46931 * 108.89134 * 54.55732 * 16 15 14 18 18 C 1.36940 * 120.62751 * 126.46464 * 17 16 15 19 19 H 1.08004 * 120.00028 * 331.24057 * 18 17 16 20 20 C 1.38813 * 119.99968 * 151.23674 * 18 17 16 21 21 N 1.31616 * 120.00238 * 343.72479 * 20 18 17 22 22 Si 1.86804 * 119.99822 * 163.71695 * 20 18 17 23 23 H 1.48496 * 109.47110 * 90.00517 * 22 20 18 24 24 H 1.48505 * 109.46905 * 210.00283 * 22 20 18 25 25 H 1.48495 * 109.47207 * 330.00501 * 22 20 18 26 26 C 1.46954 * 118.71901 * 306.64481 * 17 16 15 27 27 C 1.53039 * 109.46398 * 84.92550 * 14 13 11 28 28 C 1.37610 * 126.36841 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47136 * 276.41907 * 1 2 3 30 30 H 1.09003 * 109.47470 * 36.41965 * 1 2 3 31 31 H 1.09004 * 109.47222 * 156.42171 * 1 2 3 32 32 H 1.08005 * 124.96419 * 0.02562 * 3 2 1 33 33 H 0.96694 * 113.99703 * 270.02073 * 8 7 6 34 34 H 1.08000 * 120.38273 * 179.97438 * 9 7 6 35 35 H 0.97000 * 119.99933 * 0.02562 * 13 11 10 36 36 H 1.09003 * 109.44560 * 324.96067 * 14 13 11 37 37 H 1.08998 * 109.50336 * 58.65466 * 15 14 13 38 38 H 1.09007 * 109.49611 * 298.55875 * 15 14 13 39 39 H 1.08999 * 109.59349 * 174.41861 * 16 15 14 40 40 H 1.08997 * 109.58707 * 294.70315 * 16 15 14 41 41 H 0.96999 * 120.00552 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.46792 * 293.57627 * 26 17 16 43 43 H 1.08995 * 109.71539 * 173.28635 * 26 17 16 44 44 H 1.08999 * 109.49676 * 301.34165 * 27 14 13 45 45 H 1.09001 * 109.49272 * 61.43860 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0949 0.0000 4 7 3.5209 0.7295 0.0110 5 6 3.6010 -0.6254 0.0059 6 7 4.6234 -1.4777 0.0011 7 6 4.4402 -2.7833 -0.0039 8 8 5.5205 -3.6051 -0.0093 9 6 3.1640 -3.3372 -0.0049 10 6 2.0538 -2.4914 0.0000 11 6 0.6794 -3.0380 -0.0014 12 8 -0.1957 -2.4835 0.6342 13 7 0.3976 -4.1509 -0.7074 14 6 -0.9638 -4.6920 -0.7092 15 6 -0.9163 -6.1910 -1.0140 16 6 -2.3382 -6.7601 -0.9809 17 7 -3.1827 -5.9842 -1.8993 18 6 -3.9118 -6.6108 -2.8745 19 1 -3.5638 -7.5434 -3.2937 20 6 -5.0982 -6.0476 -3.3241 21 7 -5.6891 -5.1070 -2.6182 22 14 -5.8558 -6.6246 -4.9311 23 1 -6.7827 -7.7536 -4.6642 24 1 -6.6062 -5.5049 -5.5547 25 1 -4.7810 -7.0737 -5.8520 26 6 -3.2266 -4.5225 -1.7537 27 6 -1.7948 -3.9784 -1.7781 28 6 2.2810 -1.1081 0.0005 29 1 -0.3633 0.1149 1.0212 30 1 -0.3634 0.8270 -0.6101 31 1 -0.3634 -0.9419 -0.4111 32 1 1.9254 2.1181 0.0004 33 1 5.8320 -3.8393 -0.8942 34 1 3.0339 -4.4094 -0.0095 35 1 1.0961 -4.5936 -1.2143 36 1 -1.4182 -4.5346 0.2690 37 1 -0.3051 -6.6953 -0.2655 38 1 -0.4847 -6.3477 -2.0026 39 1 -2.3214 -7.8041 -1.2938 40 1 -2.7370 -6.6884 0.0310 41 1 -6.5180 -4.7131 -2.9325 42 1 -3.6988 -4.2660 -0.8053 43 1 -3.7966 -4.0881 -2.5749 44 1 -1.8087 -2.9079 -1.5734 45 1 -1.3548 -4.1560 -2.7594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002989986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:31 Heat of formation + Delta-G solvation = 22.652730 kcal Electronic energy + Delta-G solvation = -30360.048383 eV Core-core repulsion = 26185.955034 eV Total energy + Delta-G solvation = -4174.093349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.60424 -41.17175 -40.29143 -39.01445 -37.32555 -36.14063 -35.34093 -34.14443 -33.17678 -31.72749 -31.14134 -30.32070 -28.06820 -27.18503 -25.85527 -24.14686 -23.96278 -23.86134 -22.62183 -21.42168 -20.89223 -19.91330 -19.12039 -18.84763 -18.37748 -18.00900 -17.44931 -17.10276 -16.69285 -16.42092 -16.23822 -15.81309 -15.60546 -15.34596 -15.27874 -15.13343 -14.77158 -14.50222 -14.44528 -14.31652 -14.09019 -13.34816 -13.13144 -12.99477 -12.87387 -12.83294 -12.67626 -12.55899 -12.11594 -12.09346 -12.00762 -11.86938 -11.84102 -11.57035 -11.48094 -11.25772 -10.58313 -10.35639 -10.10762 -9.90888 -9.58366 -8.69179 -7.87903 -5.34139 -0.74488 -0.06210 1.18203 1.44827 1.47467 1.49371 1.58369 1.70777 1.88880 2.22837 2.51571 2.56421 3.07546 3.26241 3.28885 3.49724 3.68001 3.68270 3.85893 3.90179 4.04739 4.09435 4.12498 4.31434 4.39839 4.46729 4.47586 4.64870 4.65926 4.72420 4.80473 4.88514 4.99680 5.03104 5.07659 5.14144 5.18768 5.32963 5.42228 5.47109 5.65154 5.71124 5.90510 6.32670 6.36946 6.39510 6.68101 6.85155 6.98942 7.14618 7.85274 8.37049 9.19016 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002624 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.029893 B =10667.829206 C =11631.108949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.477 5.477 3 C 0.306 3.694 4 N -0.527 5.527 5 C 0.246 3.754 6 N -0.488 5.488 7 C 0.331 3.669 8 O -0.478 6.478 9 C -0.125 4.125 10 C -0.059 4.059 11 C 0.558 3.442 12 O -0.552 6.552 13 N -0.692 5.692 14 C 0.162 3.838 15 C -0.124 4.124 16 C 0.141 3.859 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.071 0.929 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.184 3.816 27 C -0.130 4.130 28 C 0.008 3.992 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.276 0.724 33 H 0.425 0.575 34 H 0.191 0.809 35 H 0.416 0.584 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.013 0.987 41 H 0.249 0.751 42 H -0.008 1.008 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.027 6.616 2.963 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.164 5.164 3 C 0.019 3.981 4 N -0.248 5.248 5 C 0.003 3.997 6 N -0.210 5.210 7 C 0.139 3.861 8 O -0.287 6.287 9 C -0.148 4.148 10 C -0.073 4.073 11 C 0.344 3.656 12 O -0.431 6.431 13 N -0.343 5.343 14 C 0.058 3.942 15 C -0.163 4.163 16 C 0.015 3.985 17 N -0.334 5.334 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.793 3.207 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.192 1.192 26 C 0.057 3.943 27 C -0.170 4.170 28 C -0.108 4.108 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.291 0.709 33 H 0.287 0.713 34 H 0.208 0.792 35 H 0.254 0.746 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.058 0.942 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.599 7.927 3.966 20.603 hybrid contribution -1.974 -1.030 -1.254 2.556 sum 16.625 6.896 2.713 18.202 Atomic orbital electron populations 1.22571 0.73123 1.06142 1.05002 1.45446 1.08915 1.04685 1.57388 1.26680 0.83035 0.95382 0.93001 1.70362 1.20339 1.08743 1.25394 1.19156 0.85754 0.91223 1.03519 1.65838 1.36002 1.04355 1.14821 1.18687 0.86727 0.84541 0.96123 1.84813 1.45322 1.62345 1.36270 1.22367 0.89489 1.02581 1.00334 1.19176 0.94275 0.89849 1.03970 1.18151 0.86913 0.80948 0.79547 1.90771 1.48667 1.59549 1.44155 1.45964 1.12485 1.26681 1.49124 1.20780 0.80772 0.93934 0.98691 1.22160 0.98287 0.92791 1.03065 1.21033 0.89824 0.95447 0.92181 1.44341 1.51752 1.01791 1.35494 1.19525 1.00391 1.06981 1.12260 0.91103 1.25831 0.96562 1.00099 1.02155 1.70179 1.18330 1.31241 1.38468 0.85314 0.78221 0.76923 0.80201 1.21275 1.22200 1.19242 1.20456 0.92256 0.83662 0.97926 1.22312 0.97279 0.98663 0.98744 1.19651 0.93523 0.89813 1.07766 0.89923 0.86352 0.89807 0.70867 0.71272 0.79209 0.74597 0.91502 0.88687 0.90540 0.91616 0.96942 0.94183 0.99010 0.92835 0.92924 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 9.78 127.77 1.25 2.52 16 2 N -0.48 -9.76 3.19 -542.68 -1.73 -11.49 16 3 C 0.31 5.19 12.50 180.05 2.25 7.44 16 4 N -0.53 -13.57 11.27 -196.93 -2.22 -15.79 16 5 C 0.25 6.91 8.37 134.28 1.12 8.03 16 6 N -0.49 -13.51 10.41 -307.36 -3.20 -16.70 16 7 C 0.33 6.81 7.71 84.90 0.65 7.47 16 8 O -0.48 -7.24 13.55 -90.58 -1.23 -8.47 16 9 C -0.12 -2.15 9.36 22.80 0.21 -1.93 16 10 C -0.06 -1.32 5.80 -19.92 -0.12 -1.44 16 11 C 0.56 13.77 6.79 86.81 0.59 14.36 16 12 O -0.55 -16.98 12.86 -3.86 -0.05 -17.03 16 13 N -0.69 -14.77 5.02 -445.22 -2.23 -17.01 16 14 C 0.16 4.64 2.42 45.02 0.11 4.75 16 15 C -0.12 -3.27 5.55 30.67 0.17 -3.10 16 16 C 0.14 5.20 6.51 86.36 0.56 5.76 16 17 N -0.61 -28.76 3.00 -699.02 -2.10 -30.86 16 18 C -0.26 -13.66 9.58 84.03 0.80 -12.85 16 19 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 20 C -0.05 -2.76 4.93 84.86 0.42 -2.35 16 21 N -0.94 -54.27 11.21 21.65 0.24 -54.02 16 22 Si 0.97 43.33 29.58 68.60 2.03 45.36 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 C 0.18 8.51 5.29 86.36 0.46 8.96 16 27 C -0.13 -4.53 5.65 30.67 0.17 -4.36 16 28 C 0.01 0.21 6.76 39.27 0.27 0.48 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.99 4.95 -2.38 -0.01 1.98 16 32 H 0.28 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.43 1.77 9.06 -74.06 -0.67 1.09 16 34 H 0.19 1.82 7.78 -2.91 -0.02 1.79 16 35 H 0.42 6.06 7.95 -92.71 -0.74 5.33 16 36 H 0.07 2.23 7.58 -2.39 -0.02 2.22 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.05 2.85 6.11 -2.39 -0.01 2.83 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -79.95 369.17 -1.90 -81.86 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -0.35 Total: 10.44 kcal Atomic # 6 Polarization: 24.80 SS G_CDS: 8.93 Total: 33.72 kcal Atomic # 7 Polarization: -134.64 SS G_CDS: -11.24 Total: -145.88 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.28 Total: -25.50 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -79.95 -1.90 -81.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002989986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.511 kcal (2) G-P(sol) polarization free energy of solvation -79.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds