Wall clock time and date at job start Wed Apr 1 2020 03:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34458 * 125.76197 * 2 1 4 4 C 1.38075 * 107.38632 * 179.75188 * 3 2 1 5 5 C 1.47359 * 126.41107 * 180.27849 * 4 3 2 6 6 O 1.34254 * 127.19942 * 312.99781 * 5 4 3 7 7 N 1.20735 * 111.95671 * 179.97438 * 6 5 4 8 8 C 1.29878 * 112.81022 * 0.02562 * 7 6 5 9 9 C 1.39930 * 127.19162 * 132.67738 * 5 4 3 10 10 C 1.46912 * 128.39667 * 359.97438 * 9 5 4 11 11 O 1.21670 * 120.00606 * 3.99894 * 10 9 5 12 12 N 1.34778 * 119.99675 * 184.00103 * 10 9 5 13 13 C 1.46502 * 120.00132 * 179.97438 * 12 10 9 14 14 C 1.53047 * 109.45789 * 275.07125 * 13 12 10 15 15 C 1.53193 * 109.30776 * 178.60937 * 14 13 12 16 16 N 1.46930 * 108.77626 * 54.63908 * 15 14 13 17 17 C 1.36936 * 120.63419 * 126.40783 * 16 15 14 18 18 H 1.08000 * 120.00113 * 329.12961 * 17 16 15 19 19 C 1.38807 * 120.00011 * 149.12489 * 17 16 15 20 20 N 1.31623 * 120.00253 * 348.62444 * 19 17 16 21 21 Si 1.86807 * 120.00009 * 168.61908 * 19 17 16 22 22 H 1.48501 * 109.46788 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47027 * 120.00380 * 21 19 17 24 24 H 1.48501 * 109.46797 * 240.00285 * 21 19 17 25 25 C 1.46923 * 118.73721 * 306.38680 * 16 15 14 26 26 C 1.53038 * 109.46510 * 155.00389 * 13 12 10 27 27 C 1.41303 * 107.17819 * 0.42403 * 4 3 2 28 28 N 1.30479 * 108.05624 * 359.56818 * 27 4 3 29 29 H 1.09005 * 109.47305 * 269.99827 * 1 2 3 30 30 H 1.08993 * 109.47570 * 29.99913 * 1 2 3 31 31 H 1.08995 * 109.47136 * 150.00409 * 1 2 3 32 32 H 1.07998 * 126.30944 * 359.97438 * 3 2 1 33 33 H 1.07998 * 126.79215 * 179.97438 * 8 7 6 34 34 H 0.97005 * 120.00500 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.45807 * 35.02332 * 13 12 10 36 36 H 1.08996 * 109.49880 * 298.55900 * 14 13 12 37 37 H 1.08995 * 109.49854 * 58.66154 * 14 13 12 38 38 H 1.08999 * 109.59142 * 294.84659 * 15 14 13 39 39 H 1.09001 * 109.70189 * 174.48979 * 15 14 13 40 40 H 0.96998 * 120.00121 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.58629 * 293.82550 * 25 16 15 42 42 H 1.08998 * 109.70704 * 173.46896 * 25 16 15 43 43 H 1.09004 * 109.48956 * 301.33754 * 26 13 12 44 44 H 1.08993 * 109.49872 * 61.42968 * 26 13 12 45 45 H 1.08003 * 125.97330 * 179.83658 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2508 1.0911 0.0000 4 6 3.5611 0.6558 0.0057 5 6 4.7650 1.5055 0.0136 6 8 5.0116 2.5710 -0.7651 7 7 6.0867 3.0656 -0.5262 8 6 6.7281 2.4449 0.4173 9 6 5.8877 1.3742 0.8385 10 6 6.1396 0.3734 1.8841 11 8 5.3423 -0.5266 2.0697 12 7 7.2541 0.4524 2.6379 13 6 7.5052 -0.5451 3.6810 14 6 6.7820 -0.1329 4.9653 15 6 7.0182 -1.1957 6.0431 16 7 8.4653 -1.3940 6.2025 17 6 9.0520 -1.2913 7.4355 18 1 8.6405 -0.6205 8.1752 19 6 10.1756 -2.0495 7.7348 20 7 10.5459 -3.0233 6.9305 21 14 11.1624 -1.6876 9.2792 22 1 10.5418 -0.5524 10.0083 23 1 11.1740 -2.8889 10.1520 24 1 12.5553 -1.3340 8.9050 25 6 9.2709 -1.7052 5.0138 26 6 9.0094 -0.6368 3.9476 27 6 3.5316 -0.7569 -0.0008 28 7 2.2829 -1.1354 -0.0005 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 1.9183 2.1186 -0.0004 33 1 7.7035 2.6938 0.8084 34 1 7.8897 1.1702 2.4903 35 1 7.1349 -1.5159 3.3517 36 1 7.1693 0.8262 5.3091 37 1 5.7135 -0.0451 4.7690 38 1 6.5521 -2.1332 5.7402 39 1 6.5889 -0.8626 6.9880 40 1 11.3308 -3.5534 7.1398 41 1 8.9884 -2.6842 4.6270 42 1 10.3286 -1.7076 5.2770 43 1 9.5261 -0.9076 3.0268 44 1 9.3756 0.3271 4.3008 45 1 4.3923 -1.4094 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003371630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:15 Heat of formation + Delta-G solvation = 107.971361 kcal Electronic energy + Delta-G solvation = -29795.631720 eV Core-core repulsion = 25625.238065 eV Total energy + Delta-G solvation = -4170.393655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.90347 -42.14745 -40.82951 -38.88546 -36.00278 -35.09859 -34.66180 -33.80242 -33.25707 -31.78592 -31.21979 -30.44230 -27.80380 -27.13897 -25.68206 -24.09624 -23.89357 -23.38665 -22.14676 -21.80692 -21.36874 -20.83292 -19.35059 -18.75514 -18.63170 -18.11740 -17.22628 -16.87162 -16.69745 -16.40622 -15.93560 -15.84907 -15.52675 -15.34665 -15.27793 -14.91068 -14.65726 -14.33593 -14.21823 -14.05229 -14.00982 -13.63816 -13.28274 -13.20060 -12.95849 -12.72258 -12.64462 -12.50985 -12.18815 -11.98287 -11.91254 -11.86479 -11.56699 -11.52379 -11.34445 -11.02817 -10.86837 -10.56600 -10.50326 -9.99899 -9.31970 -8.64981 -7.86244 -5.36702 -0.20580 0.82087 0.85807 1.38543 1.48038 1.49730 1.58966 1.60230 1.91295 2.21477 2.34967 2.51896 3.24887 3.31158 3.38062 3.61689 3.68647 3.84766 3.87615 3.92566 4.05786 4.14599 4.25004 4.36266 4.45391 4.46898 4.49928 4.67116 4.68521 4.69120 4.75174 4.83433 4.86002 4.89019 5.05644 5.07749 5.18147 5.32192 5.40710 5.50664 5.55580 5.65876 5.75685 5.93744 6.42181 6.56619 6.59173 7.11890 7.16755 7.25920 7.84873 8.38477 9.20360 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002363 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.501442 B =11844.631524 C =12855.377631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.362 5.362 3 C 0.121 3.879 4 C -0.227 4.227 5 C 0.143 3.857 6 O 0.101 5.899 7 N -0.382 5.382 8 C 0.045 3.955 9 C -0.269 4.269 10 C 0.594 3.406 11 O -0.562 6.562 12 N -0.702 5.702 13 C 0.167 3.833 14 C -0.123 4.123 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.066 0.934 19 C -0.049 4.049 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.179 3.821 26 C -0.129 4.129 27 C 0.114 3.886 28 N -0.334 5.334 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.094 0.906 32 H 0.228 0.772 33 H 0.230 0.770 34 H 0.412 0.588 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.006 0.994 39 H 0.056 0.944 40 H 0.251 0.749 41 H -0.006 1.006 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 13.982 -17.928 28.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.140 5.140 3 C -0.032 4.032 4 C -0.241 4.241 5 C 0.075 3.925 6 O 0.043 5.957 7 N -0.089 5.089 8 C -0.134 4.134 9 C -0.277 4.277 10 C 0.382 3.618 11 O -0.442 6.442 12 N -0.353 5.353 13 C 0.062 3.938 14 C -0.163 4.163 15 C 0.019 3.981 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.084 0.916 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.798 3.202 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.214 1.214 25 C 0.053 3.947 26 C -0.169 4.169 27 C -0.073 4.073 28 N -0.155 5.155 29 H 0.106 0.894 30 H 0.147 0.853 31 H 0.113 0.887 32 H 0.245 0.755 33 H 0.247 0.753 34 H 0.249 0.751 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.012 0.988 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.868 13.282 -18.533 28.968 hybrid contribution 1.721 -0.178 1.499 2.290 sum -16.147 13.104 -17.034 26.881 Atomic orbital electron populations 1.22402 0.70779 1.06859 1.05148 1.48739 1.08631 1.03097 1.53504 1.23587 0.88821 0.95287 0.95458 1.17854 0.89458 0.91528 1.25225 1.22119 0.93939 0.87690 0.88715 1.84881 1.28554 1.34294 1.47959 1.73528 0.94783 1.21452 1.19178 1.25449 1.02511 0.91609 0.93880 1.21280 0.98269 1.03354 1.04798 1.16932 0.81355 0.83443 0.80079 1.90825 1.46637 1.36071 1.70638 1.45805 1.23096 1.31153 1.35275 1.20646 0.95676 0.91164 0.86279 1.22164 0.99343 0.99565 0.95234 1.20956 0.84956 0.95198 0.96978 1.44320 1.02068 1.82845 1.04079 1.19536 1.10048 1.17484 0.92074 0.91614 1.25912 1.02002 0.95617 1.00934 1.70146 1.27083 1.21254 1.39792 0.85170 0.78326 0.77363 0.79349 1.19062 1.22135 1.21408 1.20571 0.96661 0.92516 0.84994 1.22270 0.93797 1.01188 0.99600 1.23872 0.94914 0.93586 0.94919 1.77221 1.02023 1.09377 1.26893 0.89367 0.85350 0.88699 0.75526 0.75340 0.75103 0.92053 0.91521 0.92319 0.97561 0.92568 0.94021 0.98813 0.91745 0.90377 0.91034 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.44 127.77 1.46 2.01 16 2 N -0.36 -6.03 3.99 -367.60 -1.47 -7.50 16 3 C 0.12 1.79 11.51 84.25 0.97 2.76 16 4 C -0.23 -4.97 5.64 -20.16 -0.11 -5.08 16 5 C 0.14 3.12 7.40 25.08 0.19 3.30 16 6 O 0.10 2.06 11.17 69.83 0.78 2.84 16 7 N -0.38 -7.88 11.97 -56.83 -0.68 -8.56 16 8 C 0.05 0.80 11.68 86.04 1.01 1.81 16 9 C -0.27 -6.10 6.36 -19.54 -0.12 -6.23 16 10 C 0.59 16.54 7.76 86.51 0.67 17.21 16 11 O -0.56 -19.64 13.81 -4.25 -0.06 -19.70 16 12 N -0.70 -17.81 5.07 -446.14 -2.26 -20.07 16 13 C 0.17 5.50 2.42 45.02 0.11 5.60 16 14 C -0.12 -4.33 5.65 30.67 0.17 -4.16 16 15 C 0.15 6.28 6.52 86.36 0.56 6.85 16 16 N -0.61 -30.62 2.99 -699.10 -2.09 -32.71 16 17 C -0.26 -14.27 9.58 84.03 0.81 -13.47 16 18 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 19 C -0.05 -2.73 5.04 84.86 0.43 -2.31 16 20 N -0.94 -55.03 11.05 21.65 0.24 -54.79 16 21 Si 0.97 44.42 29.57 68.60 2.03 46.45 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.18 8.46 5.26 86.36 0.45 8.91 16 26 C -0.13 -4.45 5.55 30.67 0.17 -4.28 16 27 C 0.11 2.96 10.27 85.65 0.88 3.84 16 28 N -0.33 -8.49 12.50 -56.25 -0.70 -9.19 16 29 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.23 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.23 2.28 7.76 -2.91 -0.02 2.26 16 34 H 0.41 7.62 7.84 -92.70 -0.73 6.90 16 35 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.06 3.42 6.09 -2.39 -0.01 3.41 16 43 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 44 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.18 4.86 7.50 -2.91 -0.02 4.83 16 Total: -1.00 -76.44 377.71 3.73 -72.71 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.31 Total: 13.75 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 7.64 Total: 16.77 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -6.96 Total: -132.82 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.72 Total: -16.86 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -76.44 3.73 -72.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003371630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.682 kcal (2) G-P(sol) polarization free energy of solvation -76.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds