Wall clock time and date at job start Wed Apr 1 2020 04:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99377 * 2 1 4 4 O 1.21563 * 119.99516 * 182.38584 * 3 2 1 5 5 C 1.47850 * 120.00152 * 2.38378 * 3 2 1 6 6 C 1.39728 * 119.43625 * 172.15491 * 5 3 2 7 7 C 1.36994 * 119.59090 * 180.28063 * 6 5 3 8 8 C 1.39893 * 118.36844 * 359.45717 * 7 6 5 9 9 N 1.35426 * 133.68368 * 180.25028 * 8 7 6 10 10 C 1.30934 * 109.56998 * 180.02562 * 9 8 7 11 11 O 1.35182 * 125.00141 * 180.02562 * 10 9 8 12 12 N 1.36392 * 110.00272 * 359.97438 * 10 9 8 13 13 H 0.97003 * 126.32034 * 179.97438 * 12 10 9 14 14 C 1.38249 * 107.36384 * 359.97438 * 12 10 9 15 15 N 1.31762 * 133.71848 * 179.97438 * 14 12 10 16 16 C 1.46500 * 120.00138 * 180.02562 * 2 1 3 17 17 C 1.53036 * 109.46017 * 60.02986 * 16 2 1 18 18 C 1.53195 * 109.31124 * 178.60104 * 17 16 2 19 19 N 1.46921 * 108.76493 * 54.65295 * 18 17 16 20 20 C 1.36938 * 120.63019 * 126.41183 * 19 18 17 21 21 H 1.08001 * 119.99616 * 324.03373 * 20 19 18 22 22 C 1.38808 * 120.00215 * 144.03829 * 20 19 18 23 23 N 1.31620 * 120.00142 * 1.92439 * 22 20 19 24 24 Si 1.86805 * 120.00076 * 181.92016 * 22 20 19 25 25 H 1.48501 * 109.47047 * 89.99867 * 24 22 20 26 26 H 1.48497 * 109.47347 * 210.00274 * 24 22 20 27 27 H 1.48502 * 109.47102 * 329.99860 * 24 22 20 28 28 C 1.46923 * 118.74220 * 306.38089 * 19 18 17 29 29 C 1.53040 * 109.45907 * 299.97161 * 16 2 1 30 30 H 1.08999 * 109.46948 * 83.78723 * 1 2 3 31 31 H 1.09005 * 109.46332 * 203.78258 * 1 2 3 32 32 H 1.08991 * 109.47481 * 323.77765 * 1 2 3 33 33 H 1.08007 * 120.20280 * 0.03673 * 6 5 3 34 34 H 1.07997 * 120.81485 * 179.73340 * 7 6 5 35 35 H 0.96701 * 113.99468 * 270.00374 * 11 10 9 36 36 H 1.09002 * 109.45170 * 179.97438 * 16 2 1 37 37 H 1.09001 * 109.49582 * 298.56160 * 17 16 2 38 38 H 1.08997 * 109.50248 * 58.66070 * 17 16 2 39 39 H 1.09002 * 109.59858 * 294.86433 * 18 17 16 40 40 H 1.08999 * 109.70338 * 174.50315 * 18 17 16 41 41 H 0.97004 * 119.99936 * 180.02562 * 23 22 20 42 42 H 1.09003 * 109.58686 * 293.82629 * 28 19 18 43 43 H 1.08997 * 109.71027 * 173.47046 * 28 19 18 44 44 H 1.08999 * 109.49931 * 301.33804 * 29 16 2 45 45 H 1.08995 * 109.49599 * 61.40748 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3536 1.1678 -0.0438 5 6 1.4004 2.4471 0.0533 6 6 2.1069 3.6411 0.2189 7 6 1.4255 4.8283 0.2744 8 6 0.0323 4.8014 0.1504 9 7 -0.9258 5.7585 0.1552 10 6 -2.1015 5.2029 0.0019 11 8 -3.2756 5.8715 -0.0391 12 7 -1.9671 3.8503 -0.1116 13 1 -2.6854 3.2098 -0.2328 14 6 -0.6182 3.5608 -0.0220 15 7 0.0780 2.4429 -0.0648 16 6 2.1976 -1.2687 -0.0006 17 6 1.8283 -2.0701 -1.2509 18 6 2.6222 -3.3802 -1.2658 19 7 2.3852 -4.0909 -0.0020 20 6 1.9523 -5.3900 -0.0027 21 1 1.2607 -5.7283 -0.7601 22 6 2.4023 -6.2721 0.9701 23 7 3.2153 -5.8504 1.9154 24 14 1.8539 -8.0575 0.9377 25 1 2.8093 -8.8541 0.1266 26 1 1.8176 -8.5895 2.3236 27 1 0.4988 -8.1483 0.3370 28 6 2.6220 -3.3815 1.2627 29 6 1.8282 -2.0712 1.2491 30 1 -0.3633 0.1112 -1.0216 31 1 -0.3632 -0.9405 0.4145 32 1 -0.3634 0.8290 0.6072 33 1 3.1834 3.6279 0.3065 34 1 1.9513 5.7623 0.4062 35 1 -3.6935 5.9857 0.8254 36 1 3.2692 -1.0691 -0.0009 37 1 0.7610 -2.2914 -1.2391 38 1 2.0698 -1.4884 -2.1405 39 1 3.6853 -3.1623 -1.3687 40 1 2.2937 -3.9995 -2.1005 41 1 3.5300 -6.4670 2.5950 42 1 3.6850 -3.1637 1.3660 43 1 2.2928 -3.9994 2.0980 44 1 2.0698 -1.4903 2.1392 45 1 0.7609 -2.2920 1.2373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005888962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:14 Heat of formation + Delta-G solvation = 65.047260 kcal Electronic energy + Delta-G solvation = -30026.898107 eV Core-core repulsion = 25854.643123 eV Total energy + Delta-G solvation = -4172.254984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.85758 -40.37966 -38.92539 -37.62206 -37.02253 -35.20939 -34.20811 -32.52985 -31.69818 -30.41530 -29.86026 -29.28065 -26.79435 -25.52041 -24.43296 -23.72408 -22.28199 -22.12513 -22.02778 -20.19918 -19.75103 -18.88329 -18.31487 -17.92382 -17.27603 -16.72794 -16.64860 -15.90071 -15.54371 -15.31283 -14.92912 -14.69567 -14.20416 -13.90832 -13.73060 -13.53028 -13.36316 -13.04915 -12.94244 -12.70233 -12.62448 -12.41938 -12.34382 -12.10091 -11.73095 -11.48114 -11.18739 -10.95553 -10.87262 -10.76918 -10.31897 -10.22549 -10.09923 -10.01790 -9.76948 -9.65563 -9.41267 -9.19889 -8.87328 -8.49846 -8.25660 -6.54856 -5.79307 -3.32548 -0.01480 0.80374 1.54457 1.92499 2.73191 2.95391 3.13105 3.36750 3.43207 3.43927 3.57189 3.75298 4.09012 4.38111 4.47370 4.51075 4.64748 5.14377 5.24136 5.33900 5.39157 5.51928 5.54606 5.56934 5.57986 5.65814 5.83348 5.90319 5.98370 6.01340 6.12098 6.22732 6.26492 6.40186 6.53696 6.60693 6.67516 6.81392 6.83295 6.94095 7.00204 7.06037 7.25336 7.40945 7.56240 7.77438 7.79255 8.21227 8.52336 9.24261 9.82854 10.43608 11.27825 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.002246 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.053722 B =12462.695069 C =13140.496119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.582 5.582 3 C 0.564 3.436 4 O -0.533 6.533 5 C 0.128 3.872 6 C -0.119 4.119 7 C -0.026 4.026 8 C 0.032 3.968 9 N -0.479 5.479 10 C 0.473 3.527 11 O -0.437 6.437 12 N -0.586 5.586 13 H 0.431 0.569 14 C 0.240 3.760 15 N -0.439 5.439 16 C 0.142 3.858 17 C -0.136 4.136 18 C 0.148 3.852 19 N -0.594 5.594 20 C -0.254 4.254 21 H 0.063 0.937 22 C 0.009 3.991 23 N -0.904 5.904 24 Si 0.904 3.096 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.172 3.828 29 C -0.146 4.146 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.415 0.585 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.255 0.745 42 H 0.019 0.981 43 H 0.099 0.901 44 H 0.050 0.950 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 22.858 -1.554 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.312 5.312 3 C 0.349 3.651 4 O -0.409 6.409 5 C -0.019 4.019 6 C -0.142 4.142 7 C -0.053 4.053 8 C -0.089 4.089 9 N -0.211 5.211 10 C 0.168 3.832 11 O -0.239 6.239 12 N -0.213 5.213 13 H 0.271 0.729 14 C 0.003 3.997 15 N -0.156 5.156 16 C 0.041 3.959 17 C -0.177 4.177 18 C 0.021 3.979 19 N -0.317 5.317 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.046 3.954 29 C -0.186 4.186 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.179 0.821 34 H 0.170 0.830 35 H 0.275 0.725 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.167 22.931 -2.046 25.588 hybrid contribution -0.968 -1.249 0.394 1.628 sum -12.135 21.682 -1.652 24.902 Atomic orbital electron populations 1.22268 0.78971 1.03095 1.02230 1.48084 1.07847 1.05797 1.69488 1.17728 0.86587 0.82714 0.78037 1.90810 1.12526 1.86468 1.51143 1.21155 0.87247 0.94998 0.98537 1.21620 1.02667 0.90608 0.99289 1.20469 0.89590 0.99412 0.95871 1.19666 0.94762 0.89330 1.05162 1.70646 0.96449 1.30629 1.23383 1.20228 0.87481 0.78061 0.97431 1.84834 1.30270 1.72650 1.36156 1.43030 1.06800 1.08688 1.62798 0.72871 1.18713 0.84829 0.92067 1.04063 1.67049 1.07409 1.26435 1.14711 1.21323 0.97274 0.80665 0.96674 1.22359 1.01394 0.98032 0.95880 1.20894 0.95787 0.90817 0.90423 1.44014 1.77854 1.10427 0.99371 1.19131 1.20526 0.85333 1.13430 0.91943 1.25343 0.97032 0.97915 0.98705 1.69902 1.35454 1.33985 1.15423 0.86281 0.78239 0.85254 0.76899 1.21261 1.21666 1.20477 1.20885 0.95137 0.88434 0.90938 1.22617 1.01700 0.99185 0.95121 0.92980 0.91585 0.88550 0.82145 0.83025 0.72510 0.88526 0.92135 0.92987 0.96146 0.92473 0.93472 0.96288 0.88336 0.93132 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 8.34 59.85 0.50 1.50 16 2 N -0.58 -9.09 2.76 -175.00 -0.48 -9.58 16 3 C 0.56 8.87 7.65 -12.33 -0.09 8.78 16 4 O -0.53 -9.78 15.65 5.31 0.08 -9.70 16 5 C 0.13 1.64 6.61 -82.97 -0.55 1.10 16 6 C -0.12 -1.26 9.55 -39.48 -0.38 -1.64 16 7 C -0.03 -0.24 10.16 -39.41 -0.40 -0.64 16 8 C 0.03 0.35 7.24 -84.56 -0.61 -0.27 16 9 N -0.48 -4.98 11.30 -12.11 -0.14 -5.12 16 10 C 0.47 3.64 9.39 -88.77 -0.83 2.81 16 11 O -0.44 -2.00 13.62 -17.24 -0.23 -2.23 16 12 N -0.59 -4.26 6.25 -13.33 -0.08 -4.35 16 13 H 0.43 1.90 8.96 -40.82 -0.37 1.53 16 14 C 0.24 2.51 8.46 -155.52 -1.32 1.19 16 15 N -0.44 -5.14 6.04 -8.77 -0.05 -5.19 16 16 C 0.14 2.57 2.47 -67.89 -0.17 2.40 16 17 C -0.14 -2.45 5.34 -26.61 -0.14 -2.59 16 18 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 19 N -0.59 -14.80 2.99 -172.32 -0.52 -15.32 16 20 C -0.25 -6.89 9.55 -15.06 -0.14 -7.04 16 21 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 22 C 0.01 0.24 5.28 -17.43 -0.09 0.15 16 23 N -0.90 -25.90 10.75 55.49 0.60 -25.31 16 24 Si 0.90 21.43 29.55 -169.99 -5.02 16.40 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.17 4.12 5.23 -3.71 -0.02 4.10 16 29 C -0.15 -2.83 5.32 -26.61 -0.14 -2.97 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.87 6.47 -51.93 -0.34 0.54 16 32 H 0.10 1.16 5.27 -52.16 -0.27 0.88 16 33 H 0.16 1.55 7.63 -52.48 -0.40 1.15 16 34 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.42 -0.41 9.06 45.56 0.41 0.00 16 36 H 0.10 1.94 6.90 -51.93 -0.36 1.59 16 37 H 0.06 1.08 7.72 -51.93 -0.40 0.67 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 2.63 6.05 -51.93 -0.31 2.31 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -34.24 364.95 -9.65 -43.89 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.88 Total: 1.02 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -4.41 Total: 9.99 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: -0.67 Total: -64.86 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.15 Total: -11.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.24 -9.65 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005888962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.932 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds