Wall clock time and date at job start Wed Apr 1 2020 04:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99377 * 2 1 4 4 O 1.21563 * 119.99516 * 182.38584 * 3 2 1 5 5 C 1.47850 * 120.00152 * 2.38378 * 3 2 1 6 6 C 1.39728 * 119.43625 * 172.15491 * 5 3 2 7 7 C 1.36994 * 119.59090 * 180.28063 * 6 5 3 8 8 C 1.39893 * 118.36844 * 359.45717 * 7 6 5 9 9 N 1.35426 * 133.68368 * 180.25028 * 8 7 6 10 10 C 1.30934 * 109.56998 * 180.02562 * 9 8 7 11 11 O 1.35182 * 125.00141 * 180.02562 * 10 9 8 12 12 N 1.36392 * 110.00272 * 359.97438 * 10 9 8 13 13 H 0.97003 * 126.32034 * 179.97438 * 12 10 9 14 14 C 1.38249 * 107.36384 * 359.97438 * 12 10 9 15 15 N 1.31762 * 133.71848 * 179.97438 * 14 12 10 16 16 C 1.46500 * 120.00138 * 180.02562 * 2 1 3 17 17 C 1.53036 * 109.46017 * 60.02986 * 16 2 1 18 18 C 1.53195 * 109.31124 * 178.60104 * 17 16 2 19 19 N 1.46921 * 108.76493 * 54.65295 * 18 17 16 20 20 C 1.36938 * 120.63019 * 126.41183 * 19 18 17 21 21 H 1.08001 * 119.99616 * 324.03373 * 20 19 18 22 22 C 1.38808 * 120.00215 * 144.03829 * 20 19 18 23 23 N 1.31620 * 120.00142 * 1.92439 * 22 20 19 24 24 Si 1.86805 * 120.00076 * 181.92016 * 22 20 19 25 25 H 1.48501 * 109.47047 * 89.99867 * 24 22 20 26 26 H 1.48497 * 109.47347 * 210.00274 * 24 22 20 27 27 H 1.48502 * 109.47102 * 329.99860 * 24 22 20 28 28 C 1.46923 * 118.74220 * 306.38089 * 19 18 17 29 29 C 1.53040 * 109.45907 * 299.97161 * 16 2 1 30 30 H 1.08999 * 109.46948 * 83.78723 * 1 2 3 31 31 H 1.09005 * 109.46332 * 203.78258 * 1 2 3 32 32 H 1.08991 * 109.47481 * 323.77765 * 1 2 3 33 33 H 1.08007 * 120.20280 * 0.03673 * 6 5 3 34 34 H 1.07997 * 120.81485 * 179.73340 * 7 6 5 35 35 H 0.96701 * 113.99468 * 270.00374 * 11 10 9 36 36 H 1.09002 * 109.45170 * 179.97438 * 16 2 1 37 37 H 1.09001 * 109.49582 * 298.56160 * 17 16 2 38 38 H 1.08997 * 109.50248 * 58.66070 * 17 16 2 39 39 H 1.09002 * 109.59858 * 294.86433 * 18 17 16 40 40 H 1.08999 * 109.70338 * 174.50315 * 18 17 16 41 41 H 0.97004 * 119.99936 * 180.02562 * 23 22 20 42 42 H 1.09003 * 109.58686 * 293.82629 * 28 19 18 43 43 H 1.08997 * 109.71027 * 173.47046 * 28 19 18 44 44 H 1.08999 * 109.49931 * 301.33804 * 29 16 2 45 45 H 1.08995 * 109.49599 * 61.40748 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3536 1.1678 -0.0438 5 6 1.4004 2.4471 0.0533 6 6 2.1069 3.6411 0.2189 7 6 1.4255 4.8283 0.2744 8 6 0.0323 4.8014 0.1504 9 7 -0.9258 5.7585 0.1552 10 6 -2.1015 5.2029 0.0019 11 8 -3.2756 5.8715 -0.0391 12 7 -1.9671 3.8503 -0.1116 13 1 -2.6854 3.2098 -0.2328 14 6 -0.6182 3.5608 -0.0220 15 7 0.0780 2.4429 -0.0648 16 6 2.1976 -1.2687 -0.0006 17 6 1.8283 -2.0701 -1.2509 18 6 2.6222 -3.3802 -1.2658 19 7 2.3852 -4.0909 -0.0020 20 6 1.9523 -5.3900 -0.0027 21 1 1.2607 -5.7283 -0.7601 22 6 2.4023 -6.2721 0.9701 23 7 3.2153 -5.8504 1.9154 24 14 1.8539 -8.0575 0.9377 25 1 2.8093 -8.8541 0.1266 26 1 1.8176 -8.5895 2.3236 27 1 0.4988 -8.1483 0.3370 28 6 2.6220 -3.3815 1.2627 29 6 1.8282 -2.0712 1.2491 30 1 -0.3633 0.1112 -1.0216 31 1 -0.3632 -0.9405 0.4145 32 1 -0.3634 0.8290 0.6072 33 1 3.1834 3.6279 0.3065 34 1 1.9513 5.7623 0.4062 35 1 -3.6935 5.9857 0.8254 36 1 3.2692 -1.0691 -0.0009 37 1 0.7610 -2.2914 -1.2391 38 1 2.0698 -1.4884 -2.1405 39 1 3.6853 -3.1623 -1.3687 40 1 2.2937 -3.9995 -2.1005 41 1 3.5300 -6.4670 2.5950 42 1 3.6850 -3.1637 1.3660 43 1 2.2928 -3.9994 2.0980 44 1 2.0698 -1.4903 2.1392 45 1 0.7609 -2.2920 1.2373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005888962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:14 Heat of formation + Delta-G solvation = 39.163106 kcal Electronic energy + Delta-G solvation = -30028.020528 eV Core-core repulsion = 25854.643123 eV Total energy + Delta-G solvation = -4173.377405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.55945 -41.49150 -39.82781 -38.89933 -37.84548 -36.66688 -35.02591 -34.23622 -32.55426 -31.95117 -31.45004 -30.47469 -27.96442 -27.11510 -25.55216 -24.59887 -23.83701 -23.52787 -22.90300 -21.42863 -20.47467 -20.39015 -19.10649 -18.73607 -18.54760 -18.24155 -17.49770 -17.14991 -16.73163 -16.52491 -16.16788 -15.74309 -15.52585 -15.33191 -14.99370 -14.80527 -14.67568 -14.35331 -14.29896 -14.05796 -13.83159 -13.42479 -13.24526 -13.21708 -13.02552 -12.82286 -12.73734 -12.52291 -12.44250 -12.07626 -12.00926 -11.92603 -11.89760 -11.49485 -11.37907 -11.25666 -10.55707 -10.20481 -10.11048 -9.70154 -9.50832 -8.56903 -7.86368 -5.43389 -0.80247 0.03704 0.92297 1.19191 1.48226 1.49703 1.58363 1.75522 1.85976 2.41512 2.50660 2.67185 3.01908 3.27211 3.30817 3.62743 3.69042 3.77069 3.89753 3.91257 4.06621 4.31238 4.36842 4.43987 4.48706 4.51575 4.66494 4.79152 4.80268 4.86073 4.89414 4.91860 5.04320 5.06574 5.13322 5.16714 5.31692 5.35457 5.49670 5.57595 5.65484 5.68815 5.77471 6.24811 6.39382 6.40780 6.45995 6.61291 7.01022 7.17881 7.83699 8.40086 9.18970 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.002246 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.053722 B =12462.695069 C =13140.496119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.585 5.585 3 C 0.563 3.437 4 O -0.567 6.567 5 C 0.105 3.895 6 C -0.116 4.116 7 C -0.021 4.021 8 C 0.028 3.972 9 N -0.512 5.512 10 C 0.497 3.503 11 O -0.434 6.434 12 N -0.573 5.573 13 H 0.444 0.556 14 C 0.229 3.771 15 N -0.440 5.440 16 C 0.152 3.848 17 C -0.120 4.120 18 C 0.145 3.855 19 N -0.611 5.611 20 C -0.264 4.264 21 H 0.068 0.932 22 C -0.046 4.046 23 N -0.935 5.935 24 Si 0.971 3.029 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.267 1.267 28 C 0.180 3.820 29 C -0.128 4.128 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.442 0.558 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.011 0.989 40 H 0.063 0.937 41 H 0.251 0.749 42 H -0.009 1.009 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.259 24.590 -2.316 28.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.314 5.314 3 C 0.350 3.650 4 O -0.447 6.447 5 C -0.041 4.041 6 C -0.139 4.139 7 C -0.048 4.048 8 C -0.094 4.094 9 N -0.244 5.244 10 C 0.192 3.808 11 O -0.240 6.240 12 N -0.202 5.202 13 H 0.288 0.712 14 C -0.010 4.010 15 N -0.157 5.157 16 C 0.049 3.951 17 C -0.160 4.160 18 C 0.019 3.981 19 N -0.334 5.334 20 C -0.394 4.394 21 H 0.085 0.915 22 C -0.241 4.241 23 N -0.581 5.581 24 Si 0.798 3.202 25 H -0.213 1.213 26 H -0.220 1.220 27 H -0.191 1.191 28 C 0.054 3.946 29 C -0.168 4.168 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.183 0.817 34 H 0.195 0.805 35 H 0.307 0.693 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.009 0.991 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.923 24.679 -2.813 28.475 hybrid contribution -0.273 -1.616 0.610 1.749 sum -14.196 23.062 -2.203 27.171 Atomic orbital electron populations 1.22384 0.77063 1.03449 1.03132 1.48019 1.08834 1.04841 1.69688 1.18132 0.86362 0.83550 0.76933 1.90783 1.14133 1.87119 1.52629 1.20692 0.87874 0.93970 1.01563 1.21650 1.02882 0.90334 0.99075 1.20707 0.89405 0.99866 0.94815 1.19964 0.95421 0.89616 1.04428 1.70670 0.97240 1.31003 1.25525 1.20315 0.87872 0.78098 0.94525 1.84817 1.28902 1.71903 1.38393 1.42992 1.06086 1.08963 1.62156 0.71189 1.18804 0.85974 0.91684 1.04532 1.66837 1.06987 1.27172 1.14672 1.20938 0.96364 0.81850 0.95951 1.22153 1.01104 0.96276 0.96492 1.21006 0.95864 0.92203 0.89047 1.44247 1.78047 1.10450 1.00686 1.19469 1.20419 0.86346 1.13210 0.91463 1.26109 0.97566 1.01859 0.98587 1.70096 1.36936 1.34974 1.16061 0.85228 0.78232 0.80196 0.76501 1.21275 1.21997 1.19117 1.20606 0.94045 0.89982 0.89961 1.22331 1.01105 0.97025 0.96364 0.91952 0.91830 0.87363 0.81741 0.80459 0.69327 0.90896 0.91302 0.91212 0.97111 0.91813 0.93983 0.99109 0.91366 0.92488 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.96 8.34 127.77 1.07 3.03 16 2 N -0.58 -17.86 2.76 -825.83 -2.28 -20.14 16 3 C 0.56 17.63 7.65 86.79 0.66 18.30 16 4 O -0.57 -21.27 15.65 -3.91 -0.06 -21.33 16 5 C 0.11 2.61 6.61 41.91 0.28 2.89 16 6 C -0.12 -2.35 9.55 22.34 0.21 -2.14 16 7 C -0.02 -0.35 10.16 22.38 0.23 -0.13 16 8 C 0.03 0.53 7.24 39.70 0.29 0.82 16 9 N -0.51 -9.36 11.30 -306.02 -3.46 -12.81 16 10 C 0.50 6.13 9.39 179.70 1.69 7.81 16 11 O -0.43 -2.39 13.62 -84.61 -1.15 -3.55 16 12 N -0.57 -6.68 6.25 -307.02 -1.92 -8.60 16 13 H 0.44 2.50 8.96 -92.71 -0.83 1.67 16 14 C 0.23 4.27 8.46 134.00 1.13 5.41 16 15 N -0.44 -9.55 6.04 -181.67 -1.10 -10.65 16 16 C 0.15 5.50 2.47 45.02 0.11 5.61 16 17 C -0.12 -4.21 5.34 30.67 0.16 -4.05 16 18 C 0.14 6.16 6.52 86.36 0.56 6.72 16 19 N -0.61 -31.01 2.99 -699.10 -2.09 -33.10 16 20 C -0.26 -14.44 9.55 84.03 0.80 -13.64 16 21 H 0.07 3.55 7.83 -2.91 -0.02 3.52 16 22 C -0.05 -2.54 5.28 84.86 0.45 -2.09 16 23 N -0.94 -55.31 10.75 21.65 0.23 -55.08 16 24 Si 0.97 44.46 29.55 68.60 2.03 46.49 16 25 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 C 0.18 8.96 5.23 86.37 0.45 9.42 16 29 C -0.13 -5.03 5.32 30.67 0.16 -4.86 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.56 6.47 -2.38 -0.02 1.55 16 32 H 0.11 2.39 5.27 -2.84 -0.01 2.37 16 33 H 0.17 3.12 7.63 -2.91 -0.02 3.10 16 34 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.44 -2.63 9.06 -74.06 -0.67 -3.30 16 36 H 0.07 3.02 6.90 -2.39 -0.02 3.01 16 37 H 0.07 2.32 7.72 -2.39 -0.02 2.30 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 41 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 42 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.07 3.80 6.05 -2.39 -0.01 3.79 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 2.45 6.72 -2.39 -0.02 2.44 16 Total: -1.00 -75.46 364.95 -1.97 -77.43 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -0.43 Total: 8.25 kcal Atomic # 6 Polarization: 24.83 SS G_CDS: 8.26 Total: 33.09 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -10.61 Total: -140.38 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -1.21 Total: -24.87 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -75.46 -1.97 -77.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005888962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.592 kcal (2) G-P(sol) polarization free energy of solvation -75.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds