Wall clock time and date at job start Wed Apr 1 2020 04:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 120.00275 * 2 1 4 4 O 1.21601 * 120.00211 * 183.57360 * 3 2 1 5 5 C 1.47547 * 119.99704 * 3.58128 * 3 2 1 6 6 C 1.46397 * 120.24969 * 329.34771 * 5 3 2 7 7 C 1.35593 * 119.10564 * 180.02562 * 6 5 3 8 8 C 1.41176 * 119.47862 * 359.97438 * 7 6 5 9 9 N 1.32064 * 132.78816 * 179.97438 * 8 7 6 10 10 N 1.28589 * 109.71823 * 180.02562 * 9 8 7 11 11 C 1.31096 * 110.35335 * 0.02562 * 10 9 8 12 12 O 1.35689 * 126.33290 * 180.02562 * 11 10 9 13 13 N 1.36531 * 107.32995 * 359.97438 * 11 10 9 14 14 C 1.36019 * 133.10398 * 180.31469 * 13 11 10 15 15 C 1.46503 * 120.00170 * 180.02562 * 2 1 3 16 16 C 1.53038 * 109.46252 * 60.06418 * 15 2 1 17 17 C 1.53190 * 109.31418 * 178.61807 * 16 15 2 18 18 N 1.46924 * 108.77667 * 54.63695 * 17 16 15 19 19 C 1.36942 * 120.62982 * 126.41055 * 18 17 16 20 20 H 1.07994 * 119.99686 * 330.74904 * 19 18 17 21 21 C 1.38811 * 119.99688 * 150.74578 * 19 18 17 22 22 N 1.31616 * 120.00123 * 343.84172 * 21 19 18 23 23 Si 1.86803 * 119.99647 * 163.83768 * 21 19 18 24 24 H 1.48498 * 109.47058 * 90.00378 * 23 21 19 25 25 H 1.48504 * 109.46727 * 210.00449 * 23 21 19 26 26 H 1.48500 * 109.47074 * 329.99920 * 23 21 19 27 27 C 1.46921 * 118.74005 * 306.39519 * 18 17 16 28 28 C 1.53040 * 109.45562 * 299.99965 * 15 2 1 29 29 H 1.08999 * 109.46649 * 95.20140 * 1 2 3 30 30 H 1.08994 * 109.47438 * 215.20386 * 1 2 3 31 31 H 1.08995 * 109.46923 * 335.20760 * 1 2 3 32 32 H 1.07993 * 120.45008 * 0.02631 * 6 5 3 33 33 H 1.07995 * 120.26223 * 180.02562 * 7 6 5 34 34 H 0.96700 * 113.99130 * 269.99436 * 12 11 10 35 35 H 1.08002 * 119.79872 * 359.95674 * 14 13 11 36 36 H 1.08993 * 109.46623 * 180.02562 * 15 2 1 37 37 H 1.08999 * 109.49864 * 298.57297 * 16 15 2 38 38 H 1.09005 * 109.49410 * 58.66852 * 16 15 2 39 39 H 1.09004 * 109.58724 * 294.84799 * 17 16 15 40 40 H 1.09005 * 109.70182 * 174.49417 * 17 16 15 41 41 H 0.97005 * 119.99821 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.58610 * 293.82020 * 27 18 17 43 43 H 1.08992 * 109.70706 * 173.46380 * 27 18 17 44 44 H 1.08998 * 109.50416 * 301.33610 * 28 15 2 45 45 H 1.09002 * 109.50021 * 61.43772 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3532 1.1682 -0.0656 5 6 1.4033 2.4437 0.0798 6 6 0.0595 2.5574 -0.4898 7 6 -0.5952 3.7417 -0.4039 8 6 0.0299 4.8366 0.2313 9 7 -0.3529 6.0800 0.4586 10 7 0.5767 6.7130 1.0820 11 6 1.6034 5.9253 1.2915 12 8 2.7581 6.2597 1.9209 13 7 1.2954 4.7058 0.7602 14 6 1.9683 3.5258 0.6901 15 6 2.1975 -1.2687 -0.0006 16 6 1.8289 -2.0698 -1.2514 17 6 2.6225 -3.3800 -1.2660 18 7 2.3849 -4.0910 -0.0024 19 6 1.9518 -5.3902 -0.0036 20 1 1.3481 -5.7573 -0.8203 21 6 2.2890 -6.2350 1.0449 22 7 3.2647 -5.9084 1.8656 23 14 1.3576 -7.8355 1.2912 24 1 2.0274 -8.9201 0.5295 25 1 1.3415 -8.1816 2.7352 26 1 -0.0364 -7.6768 0.8047 27 6 2.6211 -3.3819 1.2624 28 6 1.8276 -2.0715 1.2488 29 1 -0.3632 -0.0932 -1.0234 30 1 -0.3634 -0.8396 0.5924 31 1 -0.3633 0.9329 0.4309 32 1 -0.4041 1.7096 -0.9719 33 1 -1.5874 3.8463 -0.8173 34 1 3.4415 6.6058 1.3308 35 1 2.9575 3.4459 1.1161 36 1 3.2691 -1.0694 0.0000 37 1 0.7617 -2.2910 -1.2403 38 1 2.0711 -1.4878 -2.1406 39 1 3.6856 -3.1622 -1.3684 40 1 2.2943 -3.9991 -2.1010 41 1 3.5000 -6.4987 2.5985 42 1 3.6841 -3.1641 1.3663 43 1 2.2915 -3.9999 2.0975 44 1 2.0688 -1.4908 2.1391 45 1 0.7603 -2.2928 1.2363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006126391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:17 Heat of formation + Delta-G solvation = 91.787343 kcal Electronic energy + Delta-G solvation = -30100.310246 eV Core-core repulsion = 25929.214799 eV Total energy + Delta-G solvation = -4171.095447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.01223 -40.58222 -38.43546 -38.10900 -37.39309 -35.56842 -34.22593 -32.69362 -31.64522 -30.28055 -29.68644 -29.50426 -27.34143 -25.93742 -24.58820 -24.08250 -22.99575 -22.32474 -22.20806 -20.41197 -19.57679 -19.12375 -18.70137 -17.75544 -17.21287 -16.91398 -16.57161 -16.31545 -15.60554 -15.38846 -15.19224 -14.95742 -14.63797 -13.95716 -13.74752 -13.68197 -13.33645 -13.12937 -13.05216 -12.99078 -12.75788 -12.67674 -12.47177 -12.37994 -11.94548 -11.58154 -11.33390 -11.22041 -10.94192 -10.92982 -10.78000 -10.45876 -10.32359 -10.23489 -10.16788 -9.92354 -9.83450 -9.65615 -8.75609 -8.59834 -8.45840 -6.75425 -5.86812 -3.30914 -0.01007 0.30243 1.32567 1.86948 2.43303 2.72172 2.97533 3.19878 3.32147 3.39574 3.40904 3.59274 3.85893 3.97131 4.16772 4.33183 4.42655 4.66548 4.89088 5.00279 5.14207 5.18067 5.26101 5.31239 5.33479 5.39000 5.40298 5.47985 5.53853 5.64772 5.72423 5.95022 5.97518 6.05586 6.19305 6.35332 6.41239 6.50233 6.66599 6.69923 6.72214 6.85490 7.20746 7.26776 7.55272 7.72402 7.91144 7.93642 8.37484 9.13063 9.75761 10.32818 11.22060 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.002197 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.198019 B =12739.159815 C =13017.826395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.593 5.593 3 C 0.565 3.435 4 O -0.532 6.532 5 C -0.144 4.144 6 C -0.075 4.075 7 C -0.085 4.085 8 C 0.215 3.785 9 N -0.272 5.272 10 N -0.237 5.237 11 C 0.321 3.679 12 O -0.426 6.426 13 N -0.405 5.405 14 C 0.133 3.867 15 C 0.145 3.855 16 C -0.137 4.137 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.255 4.255 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.175 3.825 28 C -0.146 4.146 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.408 0.592 35 H 0.183 0.817 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.021 0.979 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 19.453 -4.429 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.324 5.324 3 C 0.352 3.648 4 O -0.410 6.410 5 C -0.151 4.151 6 C -0.099 4.099 7 C -0.106 4.106 8 C -0.035 4.035 9 N -0.119 5.119 10 N -0.087 5.087 11 C 0.022 3.978 12 O -0.226 6.226 13 N -0.097 5.097 14 C 0.009 3.991 15 C 0.044 3.956 16 C -0.177 4.177 17 C 0.020 3.980 18 N -0.314 5.314 19 C -0.385 4.385 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.048 3.952 28 C -0.187 4.187 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.189 0.811 33 H 0.186 0.814 34 H 0.266 0.734 35 H 0.200 0.800 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.346 20.627 -3.648 21.888 hybrid contribution 0.754 -1.767 -0.056 1.922 sum -5.592 18.860 -3.704 20.018 Atomic orbital electron populations 1.22489 0.80165 1.03995 1.02139 1.48022 1.07085 1.06085 1.71205 1.17633 0.86808 0.82834 0.77567 1.90842 1.13033 1.86922 1.50211 1.20662 0.96121 0.94575 1.03717 1.22978 0.91871 0.98207 0.96799 1.20258 1.01782 0.88368 1.00164 1.22181 0.83923 0.96897 1.00534 1.74967 1.20229 1.00757 1.15925 1.74546 0.97754 1.23556 1.12861 1.21871 0.92720 0.81304 1.01938 1.85025 1.20977 1.83132 1.33427 1.44000 1.15967 1.10540 1.39239 1.21686 0.97977 0.81939 0.97453 1.21323 0.97271 0.80259 0.96770 1.22370 1.01542 0.98079 0.95757 1.20873 0.95827 0.90849 0.90460 1.44074 1.77803 1.10223 0.99334 1.19145 1.25356 0.86383 1.07621 0.91677 1.25095 0.96733 0.97689 0.99968 1.70016 1.27821 1.37975 1.18760 0.86310 0.79769 0.83594 0.77149 1.21324 1.21545 1.20460 1.20737 0.95325 0.88548 0.90576 1.22593 1.01820 0.99055 0.95188 0.91686 0.89990 0.89914 0.81087 0.81420 0.73439 0.80001 0.88383 0.91930 0.92805 0.96173 0.92324 0.93521 0.96070 0.89185 0.92988 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 7.91 59.85 0.47 0.93 16 2 N -0.59 -7.27 2.76 -175.12 -0.48 -7.75 16 3 C 0.57 7.16 7.46 -12.46 -0.09 7.07 16 4 O -0.53 -8.65 16.02 5.28 0.08 -8.56 16 5 C -0.14 -1.37 5.56 -103.46 -0.57 -1.94 16 6 C -0.07 -0.51 7.63 -37.25 -0.28 -0.79 16 7 C -0.08 -0.59 10.09 -39.41 -0.40 -0.99 16 8 C 0.21 2.22 7.91 -155.70 -1.23 0.99 16 9 N -0.27 -3.41 12.28 31.26 0.38 -3.03 16 10 N -0.24 -3.03 12.19 29.73 0.36 -2.67 16 11 C 0.32 3.40 9.38 -88.50 -0.83 2.57 16 12 O -0.43 -3.32 13.65 -18.77 -0.26 -3.58 16 13 N -0.41 -4.10 2.95 -63.68 -0.19 -4.29 16 14 C 0.13 1.25 10.53 -16.33 -0.17 1.08 16 15 C 0.14 2.27 2.48 -67.89 -0.17 2.10 16 16 C -0.14 -2.14 5.34 -26.61 -0.14 -2.28 16 17 C 0.15 2.88 6.52 -3.71 -0.02 2.85 16 18 N -0.59 -13.94 2.99 -172.32 -0.51 -14.45 16 19 C -0.26 -6.66 9.58 -15.06 -0.14 -6.81 16 20 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 21 C 0.00 0.11 4.93 -17.43 -0.09 0.02 16 22 N -0.90 -25.35 11.23 55.49 0.62 -24.73 16 23 Si 0.90 20.86 29.58 -169.99 -5.03 15.83 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.17 3.92 5.29 -3.71 -0.02 3.90 16 28 C -0.15 -2.54 5.29 -26.61 -0.14 -2.68 16 29 H 0.06 0.43 7.42 -51.93 -0.39 0.04 16 30 H 0.08 0.76 6.48 -51.93 -0.34 0.42 16 31 H 0.08 0.53 4.61 -51.93 -0.24 0.29 16 32 H 0.17 0.77 4.88 -52.49 -0.26 0.52 16 33 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.41 0.95 9.06 45.56 0.41 1.36 16 35 H 0.18 1.54 7.88 -52.49 -0.41 1.13 16 36 H 0.10 1.77 6.90 -51.93 -0.36 1.41 16 37 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 2.27 6.13 -51.93 -0.32 1.96 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.01 6.76 -51.93 -0.35 0.66 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -34.12 363.44 -8.10 -42.22 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.72 Total: -0.50 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -3.83 Total: 6.03 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.18 Total: -56.92 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.17 Total: -12.14 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.12 -8.10 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006126391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.006 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds