Wall clock time and date at job start Wed Apr 1 2020 04:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 120.00275 * 2 1 4 4 O 1.21601 * 120.00211 * 183.57360 * 3 2 1 5 5 C 1.47547 * 119.99704 * 3.58128 * 3 2 1 6 6 C 1.46397 * 120.24969 * 329.34771 * 5 3 2 7 7 C 1.35593 * 119.10564 * 180.02562 * 6 5 3 8 8 C 1.41176 * 119.47862 * 359.97438 * 7 6 5 9 9 N 1.32064 * 132.78816 * 179.97438 * 8 7 6 10 10 N 1.28589 * 109.71823 * 180.02562 * 9 8 7 11 11 C 1.31096 * 110.35335 * 0.02562 * 10 9 8 12 12 O 1.35689 * 126.33290 * 180.02562 * 11 10 9 13 13 N 1.36531 * 107.32995 * 359.97438 * 11 10 9 14 14 C 1.36019 * 133.10398 * 180.31469 * 13 11 10 15 15 C 1.46503 * 120.00170 * 180.02562 * 2 1 3 16 16 C 1.53038 * 109.46252 * 60.06418 * 15 2 1 17 17 C 1.53190 * 109.31418 * 178.61807 * 16 15 2 18 18 N 1.46924 * 108.77667 * 54.63695 * 17 16 15 19 19 C 1.36942 * 120.62982 * 126.41055 * 18 17 16 20 20 H 1.07994 * 119.99686 * 330.74904 * 19 18 17 21 21 C 1.38811 * 119.99688 * 150.74578 * 19 18 17 22 22 N 1.31616 * 120.00123 * 343.84172 * 21 19 18 23 23 Si 1.86803 * 119.99647 * 163.83768 * 21 19 18 24 24 H 1.48498 * 109.47058 * 90.00378 * 23 21 19 25 25 H 1.48504 * 109.46727 * 210.00449 * 23 21 19 26 26 H 1.48500 * 109.47074 * 329.99920 * 23 21 19 27 27 C 1.46921 * 118.74005 * 306.39519 * 18 17 16 28 28 C 1.53040 * 109.45562 * 299.99965 * 15 2 1 29 29 H 1.08999 * 109.46649 * 95.20140 * 1 2 3 30 30 H 1.08994 * 109.47438 * 215.20386 * 1 2 3 31 31 H 1.08995 * 109.46923 * 335.20760 * 1 2 3 32 32 H 1.07993 * 120.45008 * 0.02631 * 6 5 3 33 33 H 1.07995 * 120.26223 * 180.02562 * 7 6 5 34 34 H 0.96700 * 113.99130 * 269.99436 * 12 11 10 35 35 H 1.08002 * 119.79872 * 359.95674 * 14 13 11 36 36 H 1.08993 * 109.46623 * 180.02562 * 15 2 1 37 37 H 1.08999 * 109.49864 * 298.57297 * 16 15 2 38 38 H 1.09005 * 109.49410 * 58.66852 * 16 15 2 39 39 H 1.09004 * 109.58724 * 294.84799 * 17 16 15 40 40 H 1.09005 * 109.70182 * 174.49417 * 17 16 15 41 41 H 0.97005 * 119.99821 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.58610 * 293.82020 * 27 18 17 43 43 H 1.08992 * 109.70706 * 173.46380 * 27 18 17 44 44 H 1.08998 * 109.50416 * 301.33610 * 28 15 2 45 45 H 1.09002 * 109.50021 * 61.43772 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3532 1.1682 -0.0656 5 6 1.4033 2.4437 0.0798 6 6 0.0595 2.5574 -0.4898 7 6 -0.5952 3.7417 -0.4039 8 6 0.0299 4.8366 0.2313 9 7 -0.3529 6.0800 0.4586 10 7 0.5767 6.7130 1.0820 11 6 1.6034 5.9253 1.2915 12 8 2.7581 6.2597 1.9209 13 7 1.2954 4.7058 0.7602 14 6 1.9683 3.5258 0.6901 15 6 2.1975 -1.2687 -0.0006 16 6 1.8289 -2.0698 -1.2514 17 6 2.6225 -3.3800 -1.2660 18 7 2.3849 -4.0910 -0.0024 19 6 1.9518 -5.3902 -0.0036 20 1 1.3481 -5.7573 -0.8203 21 6 2.2890 -6.2350 1.0449 22 7 3.2647 -5.9084 1.8656 23 14 1.3576 -7.8355 1.2912 24 1 2.0274 -8.9201 0.5295 25 1 1.3415 -8.1816 2.7352 26 1 -0.0364 -7.6768 0.8047 27 6 2.6211 -3.3819 1.2624 28 6 1.8276 -2.0715 1.2488 29 1 -0.3632 -0.0932 -1.0234 30 1 -0.3634 -0.8396 0.5924 31 1 -0.3633 0.9329 0.4309 32 1 -0.4041 1.7096 -0.9719 33 1 -1.5874 3.8463 -0.8173 34 1 3.4415 6.6058 1.3308 35 1 2.9575 3.4459 1.1161 36 1 3.2691 -1.0694 0.0000 37 1 0.7617 -2.2910 -1.2403 38 1 2.0711 -1.4878 -2.1406 39 1 3.6856 -3.1622 -1.3684 40 1 2.2943 -3.9991 -2.1010 41 1 3.5000 -6.4987 2.5985 42 1 3.6841 -3.1641 1.3663 43 1 2.2915 -3.9999 2.0975 44 1 2.0688 -1.4908 2.1391 45 1 0.7603 -2.2928 1.2363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006126391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:16 Heat of formation + Delta-G solvation = 67.005906 kcal Electronic energy + Delta-G solvation = -30101.384850 eV Core-core repulsion = 25929.214799 eV Total energy + Delta-G solvation = -4172.170051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.76717 -41.57165 -39.41669 -38.88776 -38.51399 -36.79068 -35.10674 -34.16753 -32.68014 -31.76619 -31.23971 -30.26325 -28.18554 -27.28626 -25.87776 -24.78633 -23.87507 -23.72769 -23.63757 -21.44601 -20.55772 -20.27553 -19.53987 -18.74005 -18.43708 -17.97280 -17.56289 -17.27325 -16.81090 -16.45334 -16.06084 -15.91425 -15.79859 -15.38267 -15.22648 -14.79609 -14.60614 -14.37500 -14.12038 -13.94653 -13.73732 -13.68574 -13.45556 -13.22186 -13.14496 -13.00296 -12.65079 -12.58410 -12.46797 -12.08034 -12.01181 -11.95651 -11.87813 -11.68234 -11.47026 -11.35609 -11.09898 -10.72933 -10.55952 -9.71175 -9.29697 -8.68405 -7.87078 -5.33901 -0.72977 -0.33577 0.59306 1.08750 1.48849 1.50557 1.59032 1.59867 1.81071 2.19384 2.51286 2.52653 2.93359 3.10213 3.29941 3.36632 3.43421 3.63896 3.67294 3.85202 4.06038 4.09292 4.21606 4.34919 4.37063 4.48381 4.61714 4.64049 4.69408 4.70133 4.71355 4.83295 4.87703 4.98184 5.05881 5.09728 5.12411 5.15895 5.33545 5.34762 5.46868 5.52103 5.66071 5.70962 6.21829 6.28914 6.40337 6.93345 7.15219 7.15369 7.85507 8.38196 9.19994 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.002197 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.198019 B =12739.159815 C =13017.826395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.590 5.590 3 C 0.566 3.434 4 O -0.576 6.576 5 C -0.143 4.143 6 C -0.060 4.060 7 C -0.077 4.077 8 C 0.210 3.790 9 N -0.303 5.303 10 N -0.271 5.271 11 C 0.325 3.675 12 O -0.430 6.430 13 N -0.408 5.408 14 C 0.131 3.869 15 C 0.156 3.844 16 C -0.120 4.120 17 C 0.141 3.859 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.072 0.928 21 C -0.052 4.052 22 N -0.938 5.938 23 Si 0.967 3.033 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.181 3.819 28 C -0.129 4.129 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.204 0.796 33 H 0.202 0.798 34 H 0.430 0.570 35 H 0.185 0.815 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.006 0.994 40 H 0.064 0.936 41 H 0.249 0.751 42 H -0.011 1.011 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 20.041 -5.938 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.320 5.320 3 C 0.354 3.646 4 O -0.456 6.456 5 C -0.150 4.150 6 C -0.084 4.084 7 C -0.098 4.098 8 C -0.040 4.040 9 N -0.150 5.150 10 N -0.120 5.120 11 C 0.024 3.976 12 O -0.233 6.233 13 N -0.100 5.100 14 C 0.007 3.993 15 C 0.052 3.948 16 C -0.160 4.160 17 C 0.015 3.985 18 N -0.332 5.332 19 C -0.389 4.389 20 H 0.089 0.911 21 C -0.247 4.247 22 N -0.584 5.584 23 Si 0.795 3.205 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.055 3.945 28 C -0.169 4.169 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.221 0.779 33 H 0.219 0.781 34 H 0.292 0.708 35 H 0.202 0.798 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.024 0.976 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.007 0.993 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.043 21.266 -5.193 23.685 hybrid contribution 1.688 -1.928 0.390 2.592 sum -7.356 19.338 -4.804 21.240 Atomic orbital electron populations 1.22880 0.77238 1.05248 1.04364 1.47889 1.08694 1.04550 1.70818 1.17973 0.86355 0.83704 0.76538 1.90831 1.15138 1.87568 1.52102 1.20444 0.97271 0.92835 1.04490 1.23223 0.90142 0.99088 0.95925 1.20694 1.02899 0.87037 0.99163 1.22775 0.83955 0.97086 1.00201 1.74871 1.20865 1.01950 1.17279 1.74455 0.98641 1.24667 1.14206 1.21937 0.93075 0.81353 1.01215 1.84983 1.20823 1.83205 1.34253 1.44036 1.16132 1.10472 1.39351 1.21734 0.98142 0.81824 0.97564 1.20866 0.96254 0.81750 0.95883 1.22150 1.01550 0.95770 0.96493 1.21034 0.95837 0.92732 0.88895 1.44330 1.77948 1.10065 1.00820 1.19518 1.24602 0.87425 1.07386 0.91053 1.25858 0.97702 1.00946 1.00188 1.70187 1.29668 1.39143 1.19429 0.85293 0.79071 0.79763 0.76404 1.21429 1.22236 1.18990 1.20492 0.94147 0.90443 0.89461 1.22301 1.01443 0.96502 0.96616 0.88555 0.90429 0.87462 0.77934 0.78063 0.70759 0.79807 0.91285 0.90280 0.90525 0.97638 0.91791 0.94183 0.99334 0.92459 0.92448 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 7.91 127.77 1.01 1.53 16 2 N -0.59 -12.71 2.76 -826.20 -2.28 -14.99 16 3 C 0.57 13.17 7.46 86.70 0.65 13.82 16 4 O -0.58 -18.44 16.02 -4.04 -0.06 -18.51 16 5 C -0.14 -2.33 5.56 -19.11 -0.11 -2.44 16 6 C -0.06 -0.54 7.63 23.78 0.18 -0.36 16 7 C -0.08 -0.77 10.09 22.38 0.23 -0.55 16 8 C 0.21 3.90 7.91 134.08 1.06 4.96 16 9 N -0.30 -7.33 12.28 -55.01 -0.68 -8.00 16 10 N -0.27 -6.82 12.19 -173.29 -2.11 -8.93 16 11 C 0.33 6.65 9.38 179.61 1.69 8.33 16 12 O -0.43 -6.34 13.65 -90.08 -1.23 -7.57 16 13 N -0.41 -7.63 2.95 -465.98 -1.38 -9.01 16 14 C 0.13 2.25 10.53 83.63 0.88 3.13 16 15 C 0.16 4.64 2.48 45.02 0.11 4.75 16 16 C -0.12 -3.42 5.34 30.67 0.16 -3.26 16 17 C 0.14 5.43 6.52 86.36 0.56 5.99 16 18 N -0.61 -28.86 2.99 -699.11 -2.09 -30.95 16 19 C -0.26 -13.52 9.58 84.03 0.80 -12.71 16 20 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 21 C -0.05 -2.79 4.93 84.86 0.42 -2.37 16 22 N -0.94 -54.57 11.23 21.65 0.24 -54.32 16 23 Si 0.97 43.18 29.58 68.60 2.03 45.21 16 24 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 C 0.18 8.38 5.29 86.36 0.46 8.84 16 28 C -0.13 -4.37 5.29 30.67 0.16 -4.21 16 29 H 0.10 0.63 7.42 -2.39 -0.02 0.62 16 30 H 0.08 1.08 6.48 -2.39 -0.02 1.07 16 31 H 0.11 0.79 4.61 -2.39 -0.01 0.78 16 32 H 0.20 0.54 4.88 -2.91 -0.01 0.52 16 33 H 0.20 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.43 1.56 9.06 -74.06 -0.67 0.89 16 35 H 0.18 2.99 7.88 -2.91 -0.02 2.97 16 36 H 0.07 2.51 6.90 -2.39 -0.02 2.49 16 37 H 0.08 2.05 7.72 -2.39 -0.02 2.03 16 38 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.06 2.36 7.93 -2.38 -0.02 2.34 16 41 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 42 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 43 H 0.06 3.01 6.13 -2.39 -0.01 3.00 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.07 2.32 6.76 -2.39 -0.02 2.30 16 Total: -1.00 -78.08 363.44 1.10 -76.99 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 0.39 Total: 4.63 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 8.26 Total: 25.47 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -8.29 Total: -126.21 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -1.29 Total: -26.08 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -78.08 1.10 -76.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006126391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.992 kcal (2) G-P(sol) polarization free energy of solvation -78.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds