Wall clock time and date at job start Wed Apr 1 2020 03:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35963 * 126.36395 * 2 1 4 4 N 1.30208 * 110.06845 * 180.02562 * 3 2 1 5 5 C 1.35726 * 109.67945 * 0.02562 * 4 3 2 6 6 N 1.33107 * 133.20210 * 180.33889 * 5 4 3 7 7 C 1.31840 * 121.83260 * 180.17351 * 6 5 4 8 8 O 1.35731 * 119.27631 * 179.71243 * 7 6 5 9 9 C 1.39123 * 121.44851 * 359.44085 * 7 6 5 10 10 C 1.39571 * 119.23197 * 0.27540 * 9 7 6 11 11 C 1.47912 * 121.00617 * 179.97438 * 10 9 7 12 12 O 1.21540 * 120.00227 * 171.26299 * 11 10 9 13 13 N 1.34774 * 119.99731 * 351.26165 * 11 10 9 14 14 C 1.46508 * 119.99876 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.49180 * 34.99842 * 14 13 11 16 16 C 1.53045 * 109.49842 * 155.06164 * 14 13 11 17 17 C 1.53036 * 109.53328 * 181.31872 * 16 14 13 18 18 C 1.53192 * 109.31460 * 298.63281 * 17 16 14 19 19 N 1.46927 * 108.77424 * 54.63970 * 18 17 16 20 20 C 1.36935 * 120.63098 * 126.39292 * 19 18 17 21 21 H 1.07999 * 119.99915 * 209.67553 * 20 19 18 22 22 C 1.38813 * 120.00209 * 29.67399 * 20 19 18 23 23 N 1.31621 * 119.99946 * 16.30003 * 22 20 19 24 24 Si 1.86797 * 119.99902 * 196.30331 * 22 20 19 25 25 H 1.48496 * 109.47295 * 90.00275 * 24 22 20 26 26 H 1.48509 * 109.46808 * 210.00013 * 24 22 20 27 27 H 1.48495 * 109.47437 * 329.99639 * 24 22 20 28 28 C 1.46935 * 118.76213 * 306.41264 * 19 18 17 29 29 C 1.37604 * 126.36144 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46985 * 258.08783 * 1 2 3 31 31 H 1.08997 * 109.47004 * 18.08757 * 1 2 3 32 32 H 1.09004 * 109.47310 * 138.08631 * 1 2 3 33 33 H 1.08000 * 124.97055 * 0.02562 * 3 2 1 34 34 H 0.96702 * 114.00051 * 269.73820 * 8 7 6 35 35 H 1.07998 * 120.38296 * 180.24486 * 9 7 6 36 36 H 0.96996 * 120.00870 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.45982 * 301.33752 * 16 14 13 38 38 H 1.08997 * 109.45512 * 61.29692 * 16 14 13 39 39 H 1.08995 * 109.50112 * 58.58821 * 17 16 14 40 40 H 1.09007 * 109.49061 * 178.65314 * 17 16 14 41 41 H 1.08990 * 109.58995 * 174.43016 * 18 17 16 42 42 H 1.09007 * 109.58658 * 294.71267 * 18 17 16 43 43 H 0.96994 * 120.00014 * 180.02562 * 23 22 20 44 44 H 1.09003 * 109.56020 * 293.78121 * 28 19 18 45 45 H 1.09009 * 109.61309 * 173.35874 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0949 0.0000 4 7 3.5209 0.7295 -0.0005 5 6 3.6010 -0.6254 -0.0015 6 7 4.6234 -1.4777 0.0034 7 6 4.4403 -2.7833 -0.0024 8 8 5.5205 -3.6051 -0.0029 9 6 3.1641 -3.3373 -0.0024 10 6 2.0539 -2.4914 -0.0020 11 6 0.6795 -3.0381 -0.0025 12 8 -0.2697 -2.2962 0.1577 13 7 0.4798 -4.3590 -0.1807 14 6 -0.8816 -4.9004 -0.1819 15 1 -1.5598 -4.1783 -0.6364 16 6 -0.9121 -6.2043 -0.9826 17 6 -2.3403 -6.7534 -1.0120 18 6 -2.7970 -7.0541 0.4190 19 7 -2.6335 -5.8414 1.2322 20 6 -3.6837 -5.3371 1.9519 21 1 -3.7475 -4.2760 2.1428 22 6 -4.6663 -6.1897 2.4361 23 7 -4.4438 -7.4857 2.4923 24 14 -6.3045 -5.4976 3.0078 25 1 -7.2514 -5.4585 1.8645 26 1 -6.8594 -6.3614 4.0808 27 1 -6.1051 -4.1229 3.5326 28 6 -1.3221 -5.1793 1.2586 29 6 2.2808 -1.1081 -0.0005 30 1 -0.3633 -0.2121 1.0056 31 1 -0.3633 0.9769 -0.3191 32 1 -0.3634 -0.7648 -0.6865 33 1 1.9255 2.1181 0.0004 34 1 5.8335 -3.8429 -0.8864 35 1 3.0340 -4.4094 -0.0032 36 1 1.2372 -4.9512 -0.3090 37 1 -0.5757 -6.0126 -2.0016 38 1 -0.2520 -6.9339 -0.5136 39 1 -3.0052 -6.0141 -1.4584 40 1 -2.3657 -7.6693 -1.6025 41 1 -3.8456 -7.3514 0.4130 42 1 -2.1912 -7.8595 0.8343 43 1 -5.1305 -8.0815 2.8303 44 1 -0.5945 -5.8299 1.7438 45 1 -1.3975 -4.2397 1.8060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007485391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:00 Heat of formation + Delta-G solvation = 58.084907 kcal Electronic energy + Delta-G solvation = -30484.218965 eV Core-core repulsion = 26311.662071 eV Total energy + Delta-G solvation = -4172.556894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.73251 -40.04098 -39.40815 -37.55288 -36.54203 -34.66546 -34.35400 -32.88505 -32.02751 -30.55374 -29.51154 -28.79172 -27.15618 -25.38164 -25.14786 -23.23155 -22.80659 -22.21840 -21.36189 -20.35515 -19.58934 -18.87169 -18.22399 -17.68214 -17.13797 -16.82881 -16.47366 -15.71643 -15.38688 -15.35453 -14.93221 -14.83435 -14.56717 -14.29008 -14.09687 -13.64501 -13.59365 -13.33539 -13.21910 -12.66260 -12.51000 -12.38601 -12.09942 -11.91260 -11.89411 -11.17492 -11.14818 -10.99965 -10.94158 -10.88400 -10.37120 -10.31725 -10.24908 -10.00990 -9.84385 -9.74989 -9.35734 -8.99235 -8.98413 -8.70331 -8.49890 -6.74001 -5.85890 -3.30668 0.08264 0.80759 2.03921 2.28770 2.86594 2.94929 3.01579 3.34200 3.41318 3.42811 3.51411 3.89877 4.08358 4.37165 4.47320 4.51395 4.62458 4.81581 4.91462 5.13861 5.22403 5.28099 5.36372 5.41691 5.46603 5.50263 5.57089 5.69032 5.93127 5.93731 5.95922 6.03126 6.11473 6.39698 6.48844 6.51633 6.55936 6.69096 6.71526 6.84252 7.07648 7.25627 7.35696 7.42471 7.55473 7.69789 7.75720 8.07783 8.39048 9.14446 9.75871 10.32229 11.22861 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.002880 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.266576 B = 9719.189788 C =10922.830996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.470 5.470 3 C 0.287 3.713 4 N -0.489 5.489 5 C 0.268 3.732 6 N -0.452 5.452 7 C 0.326 3.674 8 O -0.474 6.474 9 C -0.141 4.141 10 C -0.051 4.051 11 C 0.554 3.446 12 O -0.527 6.527 13 N -0.706 5.706 14 C 0.125 3.875 15 H 0.089 0.911 16 C -0.116 4.116 17 C -0.139 4.139 18 C 0.168 3.832 19 N -0.586 5.586 20 C -0.255 4.255 21 H 0.066 0.934 22 C 0.006 3.994 23 N -0.902 5.902 24 Si 0.904 3.096 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.142 3.858 29 C 0.032 3.968 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.226 0.774 34 H 0.402 0.598 35 H 0.155 0.845 36 H 0.396 0.604 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.020 0.980 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.441 9.184 -10.392 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.157 5.157 3 C -0.001 4.001 4 N -0.210 5.210 5 C 0.024 3.976 6 N -0.173 5.173 7 C 0.134 3.866 8 O -0.280 6.280 9 C -0.165 4.165 10 C -0.065 4.065 11 C 0.340 3.660 12 O -0.406 6.406 13 N -0.355 5.355 14 C 0.020 3.980 15 H 0.107 0.893 16 C -0.154 4.154 17 C -0.179 4.179 18 C 0.042 3.958 19 N -0.309 5.309 20 C -0.385 4.385 21 H 0.084 0.916 22 C -0.193 4.193 23 N -0.546 5.546 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.015 3.985 29 C -0.084 4.084 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.242 0.758 34 H 0.259 0.741 35 H 0.172 0.828 36 H 0.231 0.769 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.939 10.458 -9.574 19.882 hybrid contribution -1.778 -0.911 -0.127 2.002 sum 12.161 9.546 -9.701 18.252 Atomic orbital electron populations 1.22727 0.73351 1.03759 1.06446 1.45306 1.08831 1.04618 1.56956 1.25704 0.84275 0.94049 0.96112 1.70381 1.18336 1.08802 1.23482 1.18930 0.85239 0.90662 1.02747 1.65829 1.35208 1.03020 1.13229 1.18482 0.85698 0.85065 0.97314 1.84863 1.45983 1.63076 1.34089 1.22110 0.90969 1.01177 1.02249 1.19280 0.94414 0.89771 1.03010 1.18047 0.87717 0.82829 0.77367 1.90762 1.43334 1.56841 1.49667 1.46135 1.10594 1.07186 1.71596 1.21885 0.80624 0.95312 1.00146 0.89283 1.21692 0.99279 0.95979 0.98430 1.22178 0.94508 0.99748 1.01452 1.20816 1.01758 0.87832 0.85366 1.43972 1.05705 1.28986 1.52233 1.19190 0.99929 0.91553 1.27798 0.91634 1.25083 1.00095 0.95600 0.98566 1.70027 1.33143 1.02240 1.49164 0.86268 0.84019 0.78321 0.78041 1.21342 1.21701 1.20360 1.21177 0.88651 0.96892 0.91819 1.19489 0.93276 0.89019 1.06593 0.89706 0.90607 0.86424 0.75779 0.74074 0.82762 0.76918 0.92980 0.92044 0.92394 0.92574 0.89504 0.96158 0.93560 0.96363 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 9.22 59.85 0.55 1.31 16 2 N -0.47 -5.26 3.19 -122.88 -0.39 -5.65 16 3 C 0.29 2.75 12.48 -89.77 -1.12 1.63 16 4 N -0.49 -6.57 11.27 -13.60 -0.15 -6.72 16 5 C 0.27 3.88 8.37 -156.97 -1.31 2.56 16 6 N -0.45 -6.50 10.41 -12.77 -0.13 -6.63 16 7 C 0.33 3.74 7.71 -17.22 -0.13 3.60 16 8 O -0.47 -4.29 13.55 -18.90 -0.26 -4.54 16 9 C -0.14 -1.44 9.51 -38.76 -0.37 -1.81 16 10 C -0.05 -0.63 5.91 -104.71 -0.62 -1.25 16 11 C 0.55 7.55 7.73 -12.30 -0.10 7.46 16 12 O -0.53 -8.32 10.80 5.33 0.06 -8.26 16 13 N -0.71 -8.85 5.04 -54.61 -0.28 -9.12 16 14 C 0.13 1.99 2.60 -67.81 -0.18 1.82 16 15 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 16 C -0.12 -1.67 5.35 -26.69 -0.14 -1.81 16 17 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 18 C 0.17 3.76 5.29 -3.71 -0.02 3.74 16 19 N -0.59 -14.15 2.99 -172.31 -0.51 -14.67 16 20 C -0.26 -6.89 9.57 -15.06 -0.14 -7.04 16 21 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 22 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 23 N -0.90 -25.54 11.27 55.49 0.63 -24.91 16 24 Si 0.90 21.39 29.58 -169.99 -5.03 16.36 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 C 0.14 2.89 6.09 -3.71 -0.02 2.87 16 29 C 0.03 0.43 6.80 -83.67 -0.57 -0.14 16 30 H 0.08 0.95 7.65 -51.93 -0.40 0.56 16 31 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 32 H 0.12 1.40 5.55 -52.67 -0.29 1.11 16 33 H 0.23 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.40 1.43 9.06 45.56 0.41 1.85 16 35 H 0.15 1.09 6.62 -52.49 -0.35 0.74 16 36 H 0.40 3.75 6.82 -40.82 -0.28 3.47 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 2.20 6.16 -51.93 -0.32 1.88 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.27 7.93 -51.92 -0.41 0.86 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -35.30 365.65 -9.94 -45.23 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.96 Total: 2.93 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -4.42 Total: 10.47 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -0.84 Total: -67.70 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.20 Total: -12.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.30 -9.94 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007485391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.318 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds