Wall clock time and date at job start Wed Apr 1 2020 03:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35963 * 126.36395 * 2 1 4 4 N 1.30208 * 110.06845 * 180.02562 * 3 2 1 5 5 C 1.35726 * 109.67945 * 0.02562 * 4 3 2 6 6 N 1.33107 * 133.20210 * 180.33889 * 5 4 3 7 7 C 1.31840 * 121.83260 * 180.17351 * 6 5 4 8 8 O 1.35731 * 119.27631 * 179.71243 * 7 6 5 9 9 C 1.39123 * 121.44851 * 359.44085 * 7 6 5 10 10 C 1.39571 * 119.23197 * 0.27540 * 9 7 6 11 11 C 1.47912 * 121.00617 * 179.97438 * 10 9 7 12 12 O 1.21540 * 120.00227 * 171.26299 * 11 10 9 13 13 N 1.34774 * 119.99731 * 351.26165 * 11 10 9 14 14 C 1.46508 * 119.99876 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.49180 * 34.99842 * 14 13 11 16 16 C 1.53045 * 109.49842 * 155.06164 * 14 13 11 17 17 C 1.53036 * 109.53328 * 181.31872 * 16 14 13 18 18 C 1.53192 * 109.31460 * 298.63281 * 17 16 14 19 19 N 1.46927 * 108.77424 * 54.63970 * 18 17 16 20 20 C 1.36935 * 120.63098 * 126.39292 * 19 18 17 21 21 H 1.07999 * 119.99915 * 209.67553 * 20 19 18 22 22 C 1.38813 * 120.00209 * 29.67399 * 20 19 18 23 23 N 1.31621 * 119.99946 * 16.30003 * 22 20 19 24 24 Si 1.86797 * 119.99902 * 196.30331 * 22 20 19 25 25 H 1.48496 * 109.47295 * 90.00275 * 24 22 20 26 26 H 1.48509 * 109.46808 * 210.00013 * 24 22 20 27 27 H 1.48495 * 109.47437 * 329.99639 * 24 22 20 28 28 C 1.46935 * 118.76213 * 306.41264 * 19 18 17 29 29 C 1.37604 * 126.36144 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46985 * 258.08783 * 1 2 3 31 31 H 1.08997 * 109.47004 * 18.08757 * 1 2 3 32 32 H 1.09004 * 109.47310 * 138.08631 * 1 2 3 33 33 H 1.08000 * 124.97055 * 0.02562 * 3 2 1 34 34 H 0.96702 * 114.00051 * 269.73820 * 8 7 6 35 35 H 1.07998 * 120.38296 * 180.24486 * 9 7 6 36 36 H 0.96996 * 120.00870 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.45982 * 301.33752 * 16 14 13 38 38 H 1.08997 * 109.45512 * 61.29692 * 16 14 13 39 39 H 1.08995 * 109.50112 * 58.58821 * 17 16 14 40 40 H 1.09007 * 109.49061 * 178.65314 * 17 16 14 41 41 H 1.08990 * 109.58995 * 174.43016 * 18 17 16 42 42 H 1.09007 * 109.58658 * 294.71267 * 18 17 16 43 43 H 0.96994 * 120.00014 * 180.02562 * 23 22 20 44 44 H 1.09003 * 109.56020 * 293.78121 * 28 19 18 45 45 H 1.09009 * 109.61309 * 173.35874 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0949 0.0000 4 7 3.5209 0.7295 -0.0005 5 6 3.6010 -0.6254 -0.0015 6 7 4.6234 -1.4777 0.0034 7 6 4.4403 -2.7833 -0.0024 8 8 5.5205 -3.6051 -0.0029 9 6 3.1641 -3.3373 -0.0024 10 6 2.0539 -2.4914 -0.0020 11 6 0.6795 -3.0381 -0.0025 12 8 -0.2697 -2.2962 0.1577 13 7 0.4798 -4.3590 -0.1807 14 6 -0.8816 -4.9004 -0.1819 15 1 -1.5598 -4.1783 -0.6364 16 6 -0.9121 -6.2043 -0.9826 17 6 -2.3403 -6.7534 -1.0120 18 6 -2.7970 -7.0541 0.4190 19 7 -2.6335 -5.8414 1.2322 20 6 -3.6837 -5.3371 1.9519 21 1 -3.7475 -4.2760 2.1428 22 6 -4.6663 -6.1897 2.4361 23 7 -4.4438 -7.4857 2.4923 24 14 -6.3045 -5.4976 3.0078 25 1 -7.2514 -5.4585 1.8645 26 1 -6.8594 -6.3614 4.0808 27 1 -6.1051 -4.1229 3.5326 28 6 -1.3221 -5.1793 1.2586 29 6 2.2808 -1.1081 -0.0005 30 1 -0.3633 -0.2121 1.0056 31 1 -0.3633 0.9769 -0.3191 32 1 -0.3634 -0.7648 -0.6865 33 1 1.9255 2.1181 0.0004 34 1 5.8335 -3.8429 -0.8864 35 1 3.0340 -4.4094 -0.0032 36 1 1.2372 -4.9512 -0.3090 37 1 -0.5757 -6.0126 -2.0016 38 1 -0.2520 -6.9339 -0.5136 39 1 -3.0052 -6.0141 -1.4584 40 1 -2.3657 -7.6693 -1.6025 41 1 -3.8456 -7.3514 0.4130 42 1 -2.1912 -7.8595 0.8343 43 1 -5.1305 -8.0815 2.8303 44 1 -0.5945 -5.8299 1.7438 45 1 -1.3975 -4.2397 1.8060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007485391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:59 Heat of formation + Delta-G solvation = 30.804989 kcal Electronic energy + Delta-G solvation = -30485.401911 eV Core-core repulsion = 26311.662071 eV Total energy + Delta-G solvation = -4173.739840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.59140 -41.13170 -40.28333 -39.02058 -37.33317 -36.08913 -35.25673 -34.36365 -33.15180 -32.33445 -30.45312 -30.13259 -27.96974 -27.26056 -26.14034 -24.16494 -23.94169 -23.84442 -22.55676 -21.46994 -20.86943 -19.83543 -19.10205 -18.76033 -18.50353 -18.06071 -17.43814 -17.01854 -16.61787 -16.33248 -16.20691 -15.98390 -15.69126 -15.44596 -15.24016 -15.22044 -14.81425 -14.48400 -14.27161 -14.19194 -13.96229 -13.52526 -13.24277 -12.99529 -12.85573 -12.80215 -12.75709 -12.49762 -12.12351 -12.06263 -11.97968 -11.83831 -11.72991 -11.56878 -11.31925 -11.16101 -10.62391 -10.34436 -10.12225 -9.87562 -9.57073 -8.68125 -7.91252 -5.38734 -0.80486 -0.05706 1.18536 1.44668 1.45641 1.49820 1.54558 1.84576 1.93202 2.21706 2.49078 2.60244 3.05441 3.23769 3.27382 3.47538 3.70518 3.74395 3.88437 3.93743 4.10394 4.11318 4.13250 4.24666 4.43917 4.48209 4.51553 4.57098 4.65375 4.81444 4.84493 4.92245 5.03307 5.10256 5.14465 5.16788 5.19994 5.27772 5.44350 5.54354 5.63326 5.76608 5.94780 6.33438 6.36575 6.40669 6.68876 6.85573 7.05726 7.13131 7.81904 8.32132 9.14329 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.002880 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.266576 B = 9719.189788 C =10922.830996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.475 5.475 3 C 0.304 3.696 4 N -0.528 5.528 5 C 0.245 3.755 6 N -0.486 5.486 7 C 0.330 3.670 8 O -0.477 6.477 9 C -0.124 4.124 10 C -0.060 4.060 11 C 0.554 3.446 12 O -0.551 6.551 13 N -0.692 5.692 14 C 0.145 3.855 15 H 0.069 0.931 16 C -0.106 4.106 17 C -0.129 4.129 18 C 0.172 3.828 19 N -0.606 5.606 20 C -0.267 4.267 21 H 0.056 0.944 22 C -0.043 4.043 23 N -0.929 5.929 24 Si 0.964 3.036 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.273 1.273 28 C 0.144 3.856 29 C 0.012 3.988 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.276 0.724 34 H 0.426 0.574 35 H 0.189 0.811 36 H 0.415 0.585 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.004 0.996 43 H 0.252 0.748 44 H 0.019 0.981 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.344 9.553 -11.886 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.161 5.161 3 C 0.017 3.983 4 N -0.250 5.250 5 C 0.002 3.998 6 N -0.208 5.208 7 C 0.138 3.862 8 O -0.287 6.287 9 C -0.147 4.147 10 C -0.074 4.074 11 C 0.342 3.658 12 O -0.431 6.431 13 N -0.343 5.343 14 C 0.039 3.961 15 H 0.087 0.913 16 C -0.144 4.144 17 C -0.168 4.168 18 C 0.047 3.953 19 N -0.330 5.330 20 C -0.398 4.398 21 H 0.074 0.926 22 C -0.239 4.239 23 N -0.575 5.575 24 Si 0.792 3.208 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.198 1.198 28 C 0.017 3.983 29 C -0.105 4.105 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.292 0.708 34 H 0.287 0.713 35 H 0.206 0.794 36 H 0.253 0.747 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.022 0.978 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.895 10.816 -11.108 21.500 hybrid contribution -1.966 -1.005 0.368 2.239 sum 12.929 9.811 -10.740 19.462 Atomic orbital electron populations 1.22630 0.72684 1.05436 1.04794 1.45495 1.09189 1.04543 1.56902 1.26704 0.83064 0.95398 0.93094 1.70356 1.20387 1.08670 1.25545 1.19176 0.85738 0.91264 1.03644 1.65828 1.36028 1.04328 1.14632 1.18667 0.86702 0.84573 0.96234 1.84821 1.45289 1.62311 1.36296 1.22386 0.89751 1.02495 1.00096 1.19216 0.94068 0.89852 1.04275 1.18265 0.88035 0.82851 0.76691 1.90786 1.44307 1.57535 1.50506 1.45823 1.09885 1.07171 1.71450 1.21345 0.81875 0.96001 0.96881 0.91277 1.21634 0.97586 0.94813 1.00387 1.22001 0.96138 1.01029 0.97651 1.20689 0.99466 0.86828 0.88356 1.44197 1.06533 1.29614 1.52614 1.19392 1.01220 0.91309 1.27838 0.92649 1.25764 1.02989 0.95906 0.99210 1.70158 1.33845 1.03175 1.50293 0.85323 0.80265 0.77695 0.77500 1.20801 1.21859 1.19835 1.21223 0.87136 0.95178 0.94745 1.19708 0.93504 0.89929 1.07329 0.91624 0.86419 0.88521 0.70823 0.71269 0.79365 0.74689 0.89156 0.90529 0.93140 0.89835 0.93153 0.97802 0.93922 0.96347 0.94848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 9.22 127.77 1.18 2.76 16 2 N -0.47 -10.14 3.19 -542.68 -1.73 -11.88 16 3 C 0.30 5.33 12.48 180.05 2.25 7.58 16 4 N -0.53 -13.89 11.27 -196.93 -2.22 -16.11 16 5 C 0.24 7.04 8.37 134.29 1.12 8.16 16 6 N -0.49 -13.78 10.41 -307.36 -3.20 -16.98 16 7 C 0.33 7.05 7.71 84.90 0.65 7.71 16 8 O -0.48 -7.57 13.55 -90.54 -1.23 -8.79 16 9 C -0.12 -2.26 9.51 22.80 0.22 -2.04 16 10 C -0.06 -1.42 5.91 -19.92 -0.12 -1.54 16 11 C 0.55 14.55 7.73 86.81 0.67 15.22 16 12 O -0.55 -17.45 10.80 -3.84 -0.04 -17.49 16 13 N -0.69 -15.85 5.04 -444.97 -2.24 -18.09 16 14 C 0.14 4.41 2.60 45.07 0.12 4.52 16 15 H 0.07 2.44 7.58 -2.39 -0.02 2.42 16 16 C -0.11 -2.71 5.35 30.62 0.16 -2.55 16 17 C -0.13 -4.19 6.08 30.67 0.19 -4.00 16 18 C 0.17 7.78 5.29 86.36 0.46 8.23 16 19 N -0.61 -29.83 2.99 -699.08 -2.09 -31.92 16 20 C -0.27 -14.84 9.57 84.03 0.80 -14.03 16 21 H 0.06 3.11 7.88 -2.91 -0.02 3.09 16 22 C -0.04 -2.36 4.92 84.86 0.42 -1.95 16 23 N -0.93 -54.01 11.27 21.65 0.24 -53.77 16 24 Si 0.96 44.77 29.58 68.60 2.03 46.80 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 28 C 0.14 5.88 6.09 86.36 0.53 6.41 16 29 C 0.01 0.30 6.80 39.28 0.27 0.57 16 30 H 0.07 1.48 7.65 -2.39 -0.02 1.46 16 31 H 0.12 1.16 8.11 -2.39 -0.02 1.14 16 32 H 0.10 2.28 5.55 -14.08 -0.08 2.21 16 33 H 0.28 1.34 8.06 -2.91 -0.02 1.31 16 34 H 0.43 1.93 9.06 -74.06 -0.67 1.26 16 35 H 0.19 1.93 6.62 -2.91 -0.02 1.91 16 36 H 0.41 6.35 6.82 -92.71 -0.63 5.71 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.05 2.63 6.16 -2.39 -0.01 2.61 16 42 H 0.00 0.18 8.14 -2.38 -0.02 0.17 16 43 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.03 1.49 7.93 -2.38 -0.02 1.47 16 Total: -1.00 -81.51 365.65 -1.86 -83.38 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -0.30 Total: 9.80 kcal Atomic # 6 Polarization: 26.14 SS G_CDS: 8.91 Total: 35.06 kcal Atomic # 7 Polarization: -137.52 SS G_CDS: -11.24 Total: -148.75 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.27 Total: -26.28 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -81.51 -1.86 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007485391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.181 kcal (2) G-P(sol) polarization free energy of solvation -81.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds