Wall clock time and date at job start Wed Apr 1 2020 03:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34462 * 125.76762 * 2 1 4 4 C 1.38070 * 107.38779 * 179.73203 * 3 2 1 5 5 C 1.47359 * 126.40809 * 180.23164 * 4 3 2 6 6 O 1.34250 * 127.19703 * 314.73478 * 5 4 3 7 7 N 1.20737 * 111.95584 * 179.82394 * 6 5 4 8 8 C 1.29884 * 112.80590 * 0.46451 * 7 6 5 9 9 C 1.39929 * 127.19044 * 135.05154 * 5 4 3 10 10 C 1.46908 * 128.40118 * 0.02562 * 9 5 4 11 11 O 1.21669 * 120.00193 * 0.68961 * 10 9 5 12 12 N 1.34775 * 120.00395 * 180.68819 * 10 9 5 13 13 C 1.46501 * 120.00340 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.49835 * 34.93490 * 13 12 10 15 15 C 1.53039 * 109.49760 * 155.00010 * 13 12 10 16 16 C 1.53035 * 109.53954 * 181.31701 * 15 13 12 17 17 C 1.53198 * 109.30983 * 298.63468 * 16 15 13 18 18 N 1.46925 * 108.77599 * 54.63362 * 17 16 15 19 19 C 1.36942 * 120.62940 * 126.41084 * 18 17 16 20 20 H 1.08000 * 119.99488 * 212.89529 * 19 18 17 21 21 C 1.38809 * 120.00085 * 32.89775 * 19 18 17 22 22 N 1.31625 * 120.00101 * 15.84266 * 21 19 18 23 23 Si 1.86793 * 120.00325 * 195.84295 * 21 19 18 24 24 H 1.48503 * 109.47020 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47617 * 119.99701 * 23 21 19 26 26 H 1.48498 * 109.47243 * 240.00398 * 23 21 19 27 27 C 1.46920 * 118.74009 * 306.39157 * 18 17 16 28 28 C 1.41297 * 107.17958 * 0.38995 * 4 3 2 29 29 N 1.30479 * 108.05808 * 359.60716 * 28 4 3 30 30 H 1.08997 * 109.46972 * 269.99863 * 1 2 3 31 31 H 1.08998 * 109.46800 * 30.00109 * 1 2 3 32 32 H 1.08995 * 109.46971 * 149.99729 * 1 2 3 33 33 H 1.07994 * 126.30330 * 359.97438 * 3 2 1 34 34 H 1.08002 * 126.78629 * 179.74028 * 8 7 6 35 35 H 0.97009 * 119.99815 * 359.97438 * 12 10 9 36 36 H 1.09006 * 109.46267 * 301.33338 * 15 13 12 37 37 H 1.09003 * 109.46499 * 61.30649 * 15 13 12 38 38 H 1.09002 * 109.49992 * 58.58051 * 16 15 13 39 39 H 1.08998 * 109.50067 * 178.68418 * 16 15 13 40 40 H 1.09002 * 109.58596 * 174.42100 * 17 16 15 41 41 H 1.08999 * 109.58618 * 294.84221 * 17 16 15 42 42 H 0.96997 * 120.00004 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.58837 * 293.82371 * 27 18 17 44 44 H 1.08996 * 109.59148 * 173.39661 * 27 18 17 45 45 H 1.08002 * 125.97093 * 179.87544 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.0910 0.0000 4 6 3.5612 0.6557 0.0062 5 6 4.7652 1.5054 0.0132 6 8 4.9981 2.5891 -0.7441 7 7 6.0761 3.0800 -0.5102 8 6 6.7365 2.4333 0.4022 9 6 5.9071 1.3476 0.8063 10 6 6.1842 0.3127 1.8115 11 8 5.3646 -0.5600 2.0281 12 7 7.3464 0.3298 2.4937 13 6 7.6230 -0.7027 3.4956 14 1 7.1930 -1.6499 3.1703 15 6 9.1361 -0.8594 3.6634 16 6 9.4264 -1.9604 4.6858 17 6 8.8282 -1.5651 6.0396 18 7 7.4001 -1.2716 5.8580 19 6 6.4558 -1.8978 6.6271 20 1 5.4841 -2.1222 6.2126 21 6 6.7475 -2.2439 7.9393 22 7 7.7870 -1.7103 8.5452 23 14 5.6649 -3.4671 8.8454 24 1 4.5693 -3.9170 7.9495 25 1 6.4794 -4.6381 9.2585 26 1 5.0847 -2.8183 10.0485 27 6 7.0044 -0.2931 4.8359 28 6 3.5317 -0.7570 0.0007 29 7 2.2830 -1.1354 0.0004 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 1.9185 2.1185 -0.0004 34 1 7.7198 2.6716 0.7801 35 1 8.0002 1.0253 2.3207 36 1 9.5819 -1.1268 2.7053 37 1 9.5622 0.0813 4.0122 38 1 8.9793 -2.8960 4.3498 39 1 10.5042 -2.0876 4.7875 40 1 8.9453 -2.3878 6.7450 41 1 9.3378 -0.6798 6.4198 42 1 7.9911 -1.9525 9.4620 43 1 7.3653 0.6960 5.1179 44 1 5.9182 -0.2764 4.7471 45 1 4.3923 -1.4095 0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008052535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:15 Heat of formation + Delta-G solvation = 130.783900 kcal Electronic energy + Delta-G solvation = -30073.949422 eV Core-core repulsion = 25904.544992 eV Total energy + Delta-G solvation = -4169.404429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -45.01236 -41.31406 -39.50525 -37.29679 -34.39113 -34.14323 -33.76986 -32.41871 -32.31532 -30.42766 -29.79148 -28.73891 -27.02286 -25.25350 -24.85748 -23.17942 -22.18259 -21.98158 -21.17019 -20.85789 -20.17074 -19.34752 -18.31027 -17.74936 -17.24759 -16.73612 -16.11486 -15.70550 -15.57561 -14.95195 -14.79773 -14.59960 -14.48511 -13.95343 -13.72845 -13.54383 -13.38510 -13.26908 -13.08370 -13.04528 -12.68310 -12.39945 -12.35755 -11.87389 -11.75886 -11.08257 -11.03118 -10.89959 -10.79296 -10.63505 -10.27026 -10.20278 -10.03956 -9.94921 -9.90882 -9.70802 -9.63304 -9.52745 -8.81115 -8.45833 -8.37314 -6.58444 -5.77410 -3.24148 0.71342 1.66058 1.73430 2.12780 2.49214 2.88740 3.34261 3.39510 3.45525 3.47525 3.52085 4.07889 4.17301 4.45164 4.53255 4.53767 4.62724 4.81832 4.95869 5.06438 5.09520 5.24738 5.32246 5.40263 5.47323 5.54132 5.56777 5.63691 5.69570 5.73105 6.09288 6.16712 6.25480 6.35050 6.53279 6.59444 6.61656 6.68235 6.71238 6.86391 7.02428 7.34106 7.44418 7.60808 7.72627 7.86898 8.00498 8.41914 8.51827 9.24487 9.85375 10.44205 11.31243 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.003108 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.042539 B = 9006.485488 C =10976.088253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.365 5.365 3 C 0.100 3.900 4 C -0.197 4.197 5 C 0.132 3.868 6 O 0.101 5.899 7 N -0.369 5.369 8 C 0.028 3.972 9 C -0.249 4.249 10 C 0.591 3.409 11 O -0.523 6.523 12 N -0.714 5.714 13 C 0.128 3.872 14 H 0.088 0.912 15 C -0.115 4.115 16 C -0.139 4.139 17 C 0.171 3.829 18 N -0.586 5.586 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.007 3.993 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.290 1.290 27 C 0.143 3.857 28 C 0.130 3.870 29 N -0.298 5.298 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.185 0.815 34 H 0.197 0.803 35 H 0.393 0.607 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.020 0.980 42 H 0.253 0.747 43 H 0.017 0.983 44 H 0.058 0.942 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 8.195 -20.042 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.143 5.143 3 C -0.051 4.051 4 C -0.210 4.210 5 C 0.065 3.935 6 O 0.040 5.960 7 N -0.074 5.074 8 C -0.151 4.151 9 C -0.257 4.257 10 C 0.377 3.623 11 O -0.399 6.399 12 N -0.364 5.364 13 C 0.023 3.977 14 H 0.106 0.894 15 C -0.153 4.153 16 C -0.179 4.179 17 C 0.045 3.955 18 N -0.309 5.309 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.192 4.192 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.201 1.201 25 H -0.215 1.215 26 H -0.217 1.217 27 C 0.015 3.985 28 C -0.058 4.058 29 N -0.118 5.118 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.202 0.798 34 H 0.214 0.786 35 H 0.227 0.773 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.038 0.962 42 H 0.063 0.937 43 H 0.034 0.966 44 H 0.076 0.924 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.766 7.588 -20.423 23.130 hybrid contribution 0.613 0.072 1.162 1.316 sum -7.152 7.659 -19.261 21.927 Atomic orbital electron populations 1.21973 0.73474 1.04793 1.04021 1.48337 1.07187 1.03840 1.54958 1.22945 0.90001 0.93808 0.98308 1.17676 0.88203 0.92070 1.23047 1.22028 0.93961 0.87662 0.89837 1.84866 1.28376 1.33719 1.49016 1.73526 0.94265 1.20988 1.18662 1.24993 1.01878 0.92720 0.95528 1.21492 0.96549 1.02291 1.05392 1.16673 0.82255 0.83584 0.79812 1.90858 1.45633 1.36893 1.66545 1.45934 1.18671 1.31466 1.40333 1.21771 0.95919 0.90988 0.88991 0.89365 1.21676 0.94412 1.00148 0.99042 1.22176 0.99552 0.97681 0.98516 1.20756 0.83434 0.99433 0.91893 1.43940 1.02418 1.45256 1.39285 1.19212 0.95969 1.31533 0.91611 0.91778 1.25145 0.98131 0.99987 0.95909 1.70046 1.29555 1.43169 1.11733 0.86249 0.80124 0.81051 0.79551 1.20082 1.21487 1.21699 1.21194 0.98136 0.91949 0.87214 1.23972 0.94982 0.92724 0.94108 1.77316 1.01621 1.07209 1.25608 0.90156 0.89159 0.88832 0.79825 0.78563 0.77341 0.93011 0.92224 0.92356 0.92713 0.90179 0.96154 0.93723 0.96559 0.92363 0.79091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.45 59.85 0.69 1.22 16 2 N -0.37 -3.72 3.99 -67.54 -0.27 -3.99 16 3 C 0.10 0.96 11.51 -16.46 -0.19 0.77 16 4 C -0.20 -2.40 5.67 -105.09 -0.60 -3.00 16 5 C 0.13 1.62 7.40 -35.24 -0.26 1.36 16 6 O 0.10 1.17 11.17 16.67 0.19 1.36 16 7 N -0.37 -4.35 11.97 30.85 0.37 -3.98 16 8 C 0.03 0.30 11.68 -16.74 -0.20 0.10 16 9 C -0.25 -3.17 6.36 -104.12 -0.66 -3.83 16 10 C 0.59 9.00 7.76 -12.75 -0.10 8.90 16 11 O -0.52 -9.75 13.67 5.22 0.07 -9.68 16 12 N -0.71 -9.99 5.08 -54.93 -0.28 -10.27 16 13 C 0.13 2.24 2.61 -67.81 -0.18 2.06 16 14 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 15 C -0.11 -1.79 5.35 -26.69 -0.14 -1.93 16 16 C -0.14 -2.54 6.08 -26.61 -0.16 -2.70 16 17 C 0.17 3.99 5.27 -3.71 -0.02 3.97 16 18 N -0.59 -14.87 2.97 -172.32 -0.51 -15.38 16 19 C -0.25 -7.16 9.53 -15.06 -0.14 -7.30 16 20 H 0.06 1.84 7.88 -52.49 -0.41 1.43 16 21 C 0.01 0.21 4.90 -17.43 -0.09 0.12 16 22 N -0.90 -26.31 11.50 55.49 0.64 -25.67 16 23 Si 0.90 22.11 29.58 -169.99 -5.03 17.08 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 C 0.14 3.10 6.09 -3.71 -0.02 3.08 16 28 C 0.13 1.76 10.24 -16.96 -0.17 1.59 16 29 N -0.30 -4.06 12.50 30.87 0.39 -3.67 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.20 1.37 7.74 -52.49 -0.41 0.96 16 35 H 0.39 4.19 7.83 -40.82 -0.32 3.87 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 2.10 6.41 -51.93 -0.33 1.76 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 1.38 7.93 -51.93 -0.41 0.96 16 45 H 0.19 2.57 7.39 -52.49 -0.39 2.18 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -35.21 378.05 -7.01 -42.23 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.03 Total: 1.89 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -2.24 Total: 4.40 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 0.33 Total: -62.96 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.26 Total: -8.32 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.21 -7.01 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008052535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.009 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds