Wall clock time and date at job start Wed Apr 1 2020 03:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34462 * 125.76762 * 2 1 4 4 C 1.38070 * 107.38779 * 179.73203 * 3 2 1 5 5 C 1.47359 * 126.40809 * 180.23164 * 4 3 2 6 6 O 1.34250 * 127.19703 * 314.73478 * 5 4 3 7 7 N 1.20737 * 111.95584 * 179.82394 * 6 5 4 8 8 C 1.29884 * 112.80590 * 0.46451 * 7 6 5 9 9 C 1.39929 * 127.19044 * 135.05154 * 5 4 3 10 10 C 1.46908 * 128.40118 * 0.02562 * 9 5 4 11 11 O 1.21669 * 120.00193 * 0.68961 * 10 9 5 12 12 N 1.34775 * 120.00395 * 180.68819 * 10 9 5 13 13 C 1.46501 * 120.00340 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.49835 * 34.93490 * 13 12 10 15 15 C 1.53039 * 109.49760 * 155.00010 * 13 12 10 16 16 C 1.53035 * 109.53954 * 181.31701 * 15 13 12 17 17 C 1.53198 * 109.30983 * 298.63468 * 16 15 13 18 18 N 1.46925 * 108.77599 * 54.63362 * 17 16 15 19 19 C 1.36942 * 120.62940 * 126.41084 * 18 17 16 20 20 H 1.08000 * 119.99488 * 212.89529 * 19 18 17 21 21 C 1.38809 * 120.00085 * 32.89775 * 19 18 17 22 22 N 1.31625 * 120.00101 * 15.84266 * 21 19 18 23 23 Si 1.86793 * 120.00325 * 195.84295 * 21 19 18 24 24 H 1.48503 * 109.47020 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47617 * 119.99701 * 23 21 19 26 26 H 1.48498 * 109.47243 * 240.00398 * 23 21 19 27 27 C 1.46920 * 118.74009 * 306.39157 * 18 17 16 28 28 C 1.41297 * 107.17958 * 0.38995 * 4 3 2 29 29 N 1.30479 * 108.05808 * 359.60716 * 28 4 3 30 30 H 1.08997 * 109.46972 * 269.99863 * 1 2 3 31 31 H 1.08998 * 109.46800 * 30.00109 * 1 2 3 32 32 H 1.08995 * 109.46971 * 149.99729 * 1 2 3 33 33 H 1.07994 * 126.30330 * 359.97438 * 3 2 1 34 34 H 1.08002 * 126.78629 * 179.74028 * 8 7 6 35 35 H 0.97009 * 119.99815 * 359.97438 * 12 10 9 36 36 H 1.09006 * 109.46267 * 301.33338 * 15 13 12 37 37 H 1.09003 * 109.46499 * 61.30649 * 15 13 12 38 38 H 1.09002 * 109.49992 * 58.58051 * 16 15 13 39 39 H 1.08998 * 109.50067 * 178.68418 * 16 15 13 40 40 H 1.09002 * 109.58596 * 174.42100 * 17 16 15 41 41 H 1.08999 * 109.58618 * 294.84221 * 17 16 15 42 42 H 0.96997 * 120.00004 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.58837 * 293.82371 * 27 18 17 44 44 H 1.08996 * 109.59148 * 173.39661 * 27 18 17 45 45 H 1.08002 * 125.97093 * 179.87544 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.0910 0.0000 4 6 3.5612 0.6557 0.0062 5 6 4.7652 1.5054 0.0132 6 8 4.9981 2.5891 -0.7441 7 7 6.0761 3.0800 -0.5102 8 6 6.7365 2.4333 0.4022 9 6 5.9071 1.3476 0.8063 10 6 6.1842 0.3127 1.8115 11 8 5.3646 -0.5600 2.0281 12 7 7.3464 0.3298 2.4937 13 6 7.6230 -0.7027 3.4956 14 1 7.1930 -1.6499 3.1703 15 6 9.1361 -0.8594 3.6634 16 6 9.4264 -1.9604 4.6858 17 6 8.8282 -1.5651 6.0396 18 7 7.4001 -1.2716 5.8580 19 6 6.4558 -1.8978 6.6271 20 1 5.4841 -2.1222 6.2126 21 6 6.7475 -2.2439 7.9393 22 7 7.7870 -1.7103 8.5452 23 14 5.6649 -3.4671 8.8454 24 1 4.5693 -3.9170 7.9495 25 1 6.4794 -4.6381 9.2585 26 1 5.0847 -2.8183 10.0485 27 6 7.0044 -0.2931 4.8359 28 6 3.5317 -0.7570 0.0007 29 7 2.2830 -1.1354 0.0004 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 1.9185 2.1185 -0.0004 34 1 7.7198 2.6716 0.7801 35 1 8.0002 1.0253 2.3207 36 1 9.5819 -1.1268 2.7053 37 1 9.5622 0.0813 4.0122 38 1 8.9793 -2.8960 4.3498 39 1 10.5042 -2.0876 4.7875 40 1 8.9453 -2.3878 6.7450 41 1 9.3378 -0.6798 6.4198 42 1 7.9911 -1.9525 9.4620 43 1 7.3653 0.6960 5.1179 44 1 5.9182 -0.2764 4.7471 45 1 4.3923 -1.4095 0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008052535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:13 Heat of formation + Delta-G solvation = 106.263001 kcal Electronic energy + Delta-G solvation = -30075.012728 eV Core-core repulsion = 25904.544992 eV Total energy + Delta-G solvation = -4170.467735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.89179 -42.15789 -40.81329 -38.88891 -35.92359 -35.08750 -34.68178 -33.99763 -33.26330 -32.30740 -30.80894 -30.12051 -27.72206 -27.23890 -25.95186 -24.10316 -23.87071 -23.37859 -22.14198 -21.80552 -21.39611 -20.82765 -19.26894 -18.69532 -18.63398 -18.21103 -17.22658 -16.86669 -16.62181 -16.41993 -16.13025 -15.83399 -15.66909 -15.36683 -15.16534 -14.89314 -14.67845 -14.33410 -14.19624 -14.02406 -13.97214 -13.65598 -13.39734 -13.27529 -13.01984 -12.79106 -12.70435 -12.55401 -12.12319 -11.99921 -11.92024 -11.72326 -11.56824 -11.51890 -11.28286 -11.02791 -10.89411 -10.63050 -10.51504 -10.09341 -9.31279 -8.62663 -7.91612 -5.42135 -0.21570 0.81724 0.86736 1.38091 1.42052 1.43859 1.55454 1.58976 1.90364 2.20063 2.34389 2.49871 3.22817 3.25651 3.37176 3.62079 3.74613 3.84048 3.87249 3.92348 4.12754 4.14796 4.23212 4.29392 4.43813 4.46597 4.50966 4.61130 4.67826 4.68418 4.73667 4.84185 4.86308 4.94143 5.05709 5.15188 5.19786 5.30405 5.39666 5.48016 5.56029 5.63709 5.75503 5.92678 6.38531 6.55447 6.60161 7.11964 7.13322 7.28877 7.81656 8.34110 9.13598 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.003108 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.042539 B = 9006.485488 C =10976.088253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.363 5.363 3 C 0.120 3.880 4 C -0.227 4.227 5 C 0.143 3.857 6 O 0.101 5.899 7 N -0.382 5.382 8 C 0.049 3.951 9 C -0.270 4.270 10 C 0.592 3.408 11 O -0.564 6.564 12 N -0.699 5.699 13 C 0.146 3.854 14 H 0.061 0.939 15 C -0.104 4.104 16 C -0.130 4.130 17 C 0.175 3.825 18 N -0.606 5.606 19 C -0.271 4.271 20 H 0.048 0.952 21 C -0.037 4.037 22 N -0.927 5.927 23 Si 0.963 3.037 24 H -0.275 1.275 25 H -0.282 1.282 26 H -0.287 1.287 27 C 0.146 3.854 28 C 0.114 3.886 29 N -0.336 5.336 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.229 0.771 34 H 0.234 0.766 35 H 0.414 0.586 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.007 0.993 42 H 0.253 0.747 43 H 0.019 0.981 44 H 0.027 0.973 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 9.862 -21.580 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.141 5.141 3 C -0.033 4.033 4 C -0.241 4.241 5 C 0.075 3.925 6 O 0.043 5.957 7 N -0.089 5.089 8 C -0.131 4.131 9 C -0.278 4.278 10 C 0.379 3.621 11 O -0.443 6.443 12 N -0.351 5.351 13 C 0.040 3.960 14 H 0.080 0.920 15 C -0.142 4.142 16 C -0.169 4.169 17 C 0.050 3.950 18 N -0.330 5.330 19 C -0.401 4.401 20 H 0.066 0.934 21 C -0.234 4.234 22 N -0.572 5.572 23 Si 0.790 3.210 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.214 1.214 27 C 0.019 3.981 28 C -0.073 4.073 29 N -0.156 5.156 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.245 0.755 34 H 0.250 0.750 35 H 0.252 0.748 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.539 9.279 -22.008 25.046 hybrid contribution 0.418 -0.401 1.624 1.724 sum -7.121 8.877 -20.385 23.346 Atomic orbital electron populations 1.22400 0.70795 1.06923 1.05050 1.48745 1.08647 1.03120 1.53548 1.23608 0.88879 0.95306 0.95467 1.17866 0.89545 0.91535 1.25110 1.22099 0.93784 0.87427 0.89147 1.84875 1.28548 1.33472 1.48804 1.73522 0.94486 1.21530 1.19398 1.25463 1.02579 0.90930 0.94152 1.21252 0.97907 1.02836 1.05801 1.16993 0.81774 0.83460 0.79853 1.90851 1.46971 1.38668 1.67836 1.45634 1.19018 1.31296 1.39130 1.21247 0.97070 0.90545 0.87129 0.92049 1.21614 0.92542 1.00006 1.00053 1.22013 1.00840 0.98126 0.95921 1.20650 0.82636 0.97494 0.94259 1.44163 1.02840 1.46120 1.39849 1.19346 0.96215 1.32183 0.92365 0.93405 1.25815 0.99562 1.01546 0.96482 1.70160 1.30871 1.44234 1.11887 0.85294 0.78555 0.78953 0.78165 1.19935 1.20835 1.21361 1.21212 0.96655 0.91441 0.88773 1.23874 0.94893 0.93639 0.94850 1.77214 1.02080 1.09424 1.26928 0.89603 0.85217 0.88620 0.75463 0.74997 0.74846 0.89220 0.90460 0.93308 0.89649 0.93708 0.97523 0.93821 0.96286 0.95441 0.80479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.45 127.77 1.46 2.23 16 2 N -0.36 -7.00 3.99 -367.60 -1.47 -8.47 16 3 C 0.12 2.07 11.51 84.25 0.97 3.04 16 4 C -0.23 -5.50 5.67 -20.16 -0.11 -5.61 16 5 C 0.14 3.37 7.40 25.08 0.19 3.55 16 6 O 0.10 2.16 11.17 69.86 0.78 2.94 16 7 N -0.38 -8.11 11.97 -56.82 -0.68 -8.79 16 8 C 0.05 0.89 11.68 86.04 1.00 1.89 16 9 C -0.27 -6.55 6.36 -19.54 -0.12 -6.67 16 10 C 0.59 17.88 7.76 86.51 0.67 18.55 16 11 O -0.56 -21.91 13.67 -4.25 -0.06 -21.96 16 12 N -0.70 -18.52 5.08 -445.92 -2.26 -20.78 16 13 C 0.15 5.02 2.61 45.07 0.12 5.14 16 14 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 15 C -0.10 -2.95 5.35 30.62 0.16 -2.79 16 16 C -0.13 -4.53 6.08 30.67 0.19 -4.34 16 17 C 0.17 8.29 5.27 86.36 0.46 8.75 16 18 N -0.61 -31.68 2.97 -699.10 -2.07 -33.75 16 19 C -0.27 -15.87 9.53 84.03 0.80 -15.07 16 20 H 0.05 2.89 7.88 -2.91 -0.02 2.87 16 21 C -0.04 -2.16 4.90 84.86 0.42 -1.74 16 22 N -0.93 -55.38 11.50 21.65 0.25 -55.13 16 23 Si 0.96 46.51 29.58 68.60 2.03 48.54 16 24 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 C 0.15 6.50 6.09 86.36 0.53 7.02 16 28 C 0.11 3.26 10.24 85.65 0.88 4.14 16 29 N -0.34 -9.43 12.50 -56.25 -0.70 -10.13 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.23 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.23 2.24 7.74 -2.91 -0.02 2.21 16 35 H 0.41 7.48 7.83 -92.70 -0.73 6.76 16 36 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.04 2.41 6.41 -2.39 -0.02 2.40 16 41 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.03 1.35 7.93 -2.39 -0.02 1.33 16 45 H 0.18 5.28 7.39 -2.91 -0.02 5.26 16 Total: -1.00 -81.52 378.05 3.72 -77.80 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.31 Total: 11.65 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 7.60 Total: 18.08 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -6.94 Total: -137.05 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.72 Total: -19.02 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -81.52 3.72 -77.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008052535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.063 kcal (2) G-P(sol) polarization free energy of solvation -81.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds