Wall clock time and date at job start Wed Apr 1 2020 03:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35973 * 126.36101 * 2 1 4 4 N 1.30204 * 110.06571 * 180.02562 * 3 2 1 5 5 C 1.35732 * 109.68115 * 359.97438 * 4 3 2 6 6 N 1.33108 * 133.19699 * 179.97438 * 5 4 3 7 7 C 1.31843 * 121.82784 * 180.02562 * 6 5 4 8 8 O 1.35730 * 119.27666 * 179.97438 * 7 6 5 9 9 C 1.39127 * 121.44960 * 359.70347 * 7 6 5 10 10 C 1.39562 * 119.22905 * 0.56838 * 9 7 6 11 11 C 1.47914 * 121.00646 * 179.74439 * 10 9 7 12 12 O 1.21548 * 120.00367 * 173.11201 * 11 10 9 13 13 N 1.34775 * 119.99771 * 353.11145 * 11 10 9 14 14 C 1.46500 * 119.99797 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47043 * 185.80098 * 14 13 11 16 16 H 1.08996 * 109.99687 * 305.15450 * 15 14 13 17 17 C 1.54329 * 109.88183 * 66.25028 * 15 14 13 18 18 C 1.55444 * 102.96743 * 141.61213 * 17 15 14 19 19 C 1.54910 * 101.45107 * 324.51388 * 18 17 15 20 20 N 1.47018 * 109.88475 * 184.05712 * 15 14 13 21 21 C 1.36941 * 125.65009 * 61.61913 * 20 15 14 22 22 H 1.08000 * 119.99497 * 14.94426 * 21 20 15 23 23 C 1.38807 * 120.00357 * 194.94087 * 21 20 15 24 24 N 1.31618 * 119.99937 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00188 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47120 * 60.00192 * 25 23 21 27 27 H 1.48499 * 109.47592 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47315 * 300.00536 * 25 23 21 29 29 C 1.37604 * 126.36749 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46926 * 254.52382 * 1 2 3 31 31 H 1.09001 * 109.47515 * 14.52630 * 1 2 3 32 32 H 1.09006 * 109.47008 * 134.52420 * 1 2 3 33 33 H 1.07999 * 124.96500 * 0.04276 * 3 2 1 34 34 H 0.96697 * 113.99839 * 89.99519 * 8 7 6 35 35 H 1.07992 * 120.38531 * 180.31367 * 9 7 6 36 36 H 0.97002 * 120.00248 * 359.97438 * 13 11 10 37 37 H 1.08998 * 109.47466 * 65.79868 * 14 13 11 38 38 H 1.09004 * 109.47301 * 305.79886 * 14 13 11 39 39 H 1.08998 * 110.71684 * 259.97609 * 17 15 14 40 40 H 1.09004 * 110.72040 * 23.24606 * 17 15 14 41 41 H 1.08999 * 111.11557 * 206.46158 * 18 17 15 42 42 H 1.08993 * 111.01621 * 82.52448 * 18 17 15 43 43 H 1.09001 * 110.36739 * 278.11071 * 19 18 17 44 44 H 1.09004 * 110.36643 * 155.90084 * 19 18 17 45 45 H 0.97004 * 120.00268 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0950 0.0000 4 7 3.5209 0.7297 -0.0005 5 6 3.6010 -0.6253 -0.0004 6 7 4.6235 -1.4775 -0.0012 7 6 4.4404 -2.7832 -0.0012 8 8 5.5207 -3.6049 -0.0026 9 6 3.1642 -3.3372 0.0056 10 6 2.0541 -2.4914 0.0007 11 6 0.6797 -3.0381 0.0021 12 8 -0.2714 -2.2912 0.1240 13 7 0.4820 -4.3645 -0.1319 14 6 -0.8793 -4.9059 -0.1311 15 6 -0.8202 -6.4347 -0.1512 16 1 -0.2213 -6.7735 -0.9965 17 6 -0.2083 -6.9536 1.1672 18 6 -1.0496 -8.2263 1.4651 19 6 -2.4474 -7.7977 0.9530 20 7 -2.1794 -6.9865 -0.2484 21 6 -3.0523 -6.7806 -1.2833 22 1 -2.6942 -6.3794 -2.2199 23 6 -4.3971 -7.0875 -1.1285 24 7 -4.8335 -7.5760 0.0131 25 14 -5.5879 -6.8059 -2.5400 26 1 -5.1675 -7.6162 -3.7114 27 1 -6.9546 -7.2100 -2.1228 28 1 -5.5882 -5.3671 -2.9078 29 6 2.2809 -1.1080 -0.0005 30 1 -0.3633 -0.2742 0.9904 31 1 -0.3634 0.9948 -0.2578 32 1 -0.3633 -0.7206 -0.7327 33 1 1.9253 2.1181 0.0007 34 1 5.8347 -3.8432 0.8804 35 1 3.0341 -4.4093 0.0106 36 1 1.2409 -4.9607 -0.2296 37 1 -1.4119 -4.5513 -1.0136 38 1 -1.4018 -4.5743 0.7662 39 1 0.8424 -7.2094 1.0302 40 1 -0.3267 -6.2182 1.9630 41 1 -1.0736 -8.4399 2.5336 42 1 -0.6742 -9.0829 0.9054 43 1 -2.9611 -7.2011 1.7069 44 1 -3.0417 -8.6741 0.6942 45 1 -5.7734 -7.7901 0.1214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027928987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:47 Heat of formation + Delta-G solvation = 61.164358 kcal Electronic energy + Delta-G solvation = -30210.680042 eV Core-core repulsion = 26038.256682 eV Total energy + Delta-G solvation = -4172.423359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.73395 -39.92377 -39.35083 -37.76284 -36.53821 -34.71022 -34.35119 -32.67992 -32.28647 -29.79099 -29.47497 -28.77965 -27.18247 -25.58279 -24.73209 -23.80779 -23.18375 -21.90951 -20.51683 -20.24769 -19.68811 -18.94368 -18.23471 -17.70139 -17.28288 -16.70438 -16.41487 -15.86412 -15.53623 -15.31643 -15.05545 -14.88301 -14.60636 -14.38763 -14.04330 -13.87900 -13.58478 -13.30960 -13.23912 -12.51886 -12.18926 -12.09613 -12.01579 -11.95754 -11.72530 -11.44556 -11.15459 -11.03238 -10.96940 -10.85989 -10.39516 -10.23560 -10.18203 -10.01991 -9.91520 -9.80720 -9.36303 -9.00335 -8.90000 -8.70641 -8.67644 -6.94578 -5.86387 -3.23860 0.08448 0.80604 2.04183 2.27840 2.89407 2.97377 3.04297 3.33652 3.38758 3.39075 3.51197 3.91741 4.08108 4.37089 4.45189 4.50499 4.61983 4.80768 4.92513 5.20281 5.22959 5.28110 5.34478 5.37440 5.45174 5.51824 5.66756 5.70295 5.90639 5.93459 5.96743 6.00202 6.12268 6.33949 6.38802 6.44651 6.56822 6.64829 6.68622 6.90826 7.07917 7.35466 7.41341 7.44255 7.51912 7.69419 7.69696 8.09425 8.16426 9.07324 9.67884 10.34788 11.25356 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002838 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.617225 B = 9862.447613 C =11223.035722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.471 5.471 3 C 0.286 3.714 4 N -0.489 5.489 5 C 0.267 3.733 6 N -0.452 5.452 7 C 0.327 3.673 8 O -0.474 6.474 9 C -0.142 4.142 10 C -0.051 4.051 11 C 0.550 3.450 12 O -0.535 6.535 13 N -0.705 5.705 14 C 0.108 3.892 15 C 0.151 3.849 16 H 0.039 0.961 17 C -0.127 4.127 18 C -0.149 4.149 19 C 0.172 3.828 20 N -0.587 5.587 21 C -0.239 4.239 22 H 0.075 0.925 23 C 0.001 3.999 24 N -0.914 5.914 25 Si 0.911 3.089 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.283 1.283 29 C 0.032 3.968 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.226 0.774 34 H 0.402 0.598 35 H 0.155 0.845 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.072 0.928 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.430 10.043 3.581 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.158 5.158 3 C -0.002 4.002 4 N -0.210 5.210 5 C 0.024 3.976 6 N -0.173 5.173 7 C 0.135 3.865 8 O -0.280 6.280 9 C -0.165 4.165 10 C -0.065 4.065 11 C 0.336 3.664 12 O -0.414 6.414 13 N -0.355 5.355 14 C -0.017 4.017 15 C 0.042 3.958 16 H 0.056 0.944 17 C -0.165 4.165 18 C -0.187 4.187 19 C 0.047 3.953 20 N -0.311 5.311 21 C -0.367 4.367 22 H 0.093 0.907 23 C -0.196 4.196 24 N -0.559 5.559 25 Si 0.741 3.259 26 H -0.210 1.210 27 H -0.215 1.215 28 H -0.210 1.210 29 C -0.084 4.084 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.242 0.758 34 H 0.260 0.740 35 H 0.173 0.827 36 H 0.232 0.768 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.768 11.372 3.026 18.883 hybrid contribution -1.727 -0.893 -0.249 1.960 sum 13.041 10.479 2.778 16.959 Atomic orbital electron populations 1.22630 0.73392 1.03302 1.06462 1.45302 1.08807 1.04646 1.57029 1.25703 0.84282 0.94021 0.96173 1.70378 1.18325 1.08821 1.23466 1.18928 0.85247 0.90653 1.02759 1.65840 1.35184 1.03032 1.13257 1.18492 0.85716 0.85053 0.97247 1.84856 1.45951 1.63062 1.34168 1.22122 0.90969 1.01209 1.02225 1.19309 0.94492 0.89758 1.02898 1.18095 0.87700 0.82993 0.77582 1.90770 1.43312 1.56844 1.50518 1.46147 1.11145 1.06501 1.71697 1.22399 0.80025 0.96413 1.02859 1.21148 0.89630 0.89531 0.95472 0.94365 1.22672 0.98158 0.98296 0.97397 1.23053 0.99368 0.96557 0.99744 1.21457 0.90667 0.95477 0.87690 1.44472 1.11070 1.54445 1.21154 1.18922 0.87673 1.39046 0.91037 0.90712 1.24921 0.96760 1.00887 0.97064 1.69924 1.14600 1.47886 1.23533 0.86229 0.80304 0.78128 0.81268 1.20987 1.21497 1.20961 1.19494 0.93254 0.89036 1.06635 0.89735 0.90581 0.86852 0.75783 0.74018 0.82730 0.76811 0.91043 0.91121 0.92309 0.91834 0.92253 0.92214 0.95552 0.90966 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 9.18 59.85 0.55 1.36 16 2 N -0.47 -5.25 3.19 -122.88 -0.39 -5.64 16 3 C 0.29 2.73 12.48 -89.76 -1.12 1.61 16 4 N -0.49 -6.54 11.27 -13.60 -0.15 -6.69 16 5 C 0.27 3.87 8.37 -156.96 -1.31 2.56 16 6 N -0.45 -6.49 10.41 -12.77 -0.13 -6.62 16 7 C 0.33 3.75 7.71 -17.22 -0.13 3.61 16 8 O -0.47 -4.29 13.55 -18.90 -0.26 -4.54 16 9 C -0.14 -1.45 9.52 -38.76 -0.37 -1.82 16 10 C -0.05 -0.63 5.91 -104.71 -0.62 -1.25 16 11 C 0.55 7.65 7.78 -12.30 -0.10 7.55 16 12 O -0.53 -8.51 11.06 5.32 0.06 -8.45 16 13 N -0.71 -9.26 5.30 -61.23 -0.32 -9.59 16 14 C 0.11 1.85 5.10 -4.04 -0.02 1.83 16 15 C 0.15 2.72 3.20 -66.95 -0.21 2.51 16 16 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 17 C -0.13 -1.92 6.20 -24.74 -0.15 -2.07 16 18 C -0.15 -2.54 7.11 -24.43 -0.17 -2.71 16 19 C 0.17 3.88 5.40 -2.53 -0.01 3.87 16 20 N -0.59 -13.73 3.13 -162.57 -0.51 -14.24 16 21 C -0.24 -6.23 9.73 -15.06 -0.15 -6.37 16 22 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 23 C 0.00 0.04 5.47 -17.43 -0.10 -0.06 16 24 N -0.91 -25.64 10.58 55.49 0.59 -25.05 16 25 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 C 0.03 0.43 6.80 -83.67 -0.57 -0.14 16 30 H 0.08 0.91 7.48 -51.93 -0.39 0.52 16 31 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.11 1.39 5.78 -52.02 -0.30 1.09 16 33 H 0.23 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.40 1.51 9.06 45.56 0.41 1.93 16 35 H 0.16 1.11 6.58 -52.49 -0.35 0.76 16 36 H 0.40 4.09 6.58 -40.82 -0.27 3.82 16 37 H 0.07 1.40 7.87 -51.93 -0.41 0.99 16 38 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.95 7.78 -51.93 -0.40 0.55 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.03 0.65 8.05 -51.93 -0.42 0.23 16 44 H 0.07 1.84 6.95 -51.93 -0.36 1.48 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -34.67 368.36 -10.06 -44.73 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.98 Total: 3.85 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -4.49 Total: 10.45 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -0.92 Total: -67.84 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.20 Total: -12.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.67 -10.06 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027928987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.893 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds