Wall clock time and date at job start Wed Apr 1 2020 03:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35973 * 126.36101 * 2 1 4 4 N 1.30204 * 110.06571 * 180.02562 * 3 2 1 5 5 C 1.35732 * 109.68115 * 359.97438 * 4 3 2 6 6 N 1.33108 * 133.19699 * 179.97438 * 5 4 3 7 7 C 1.31843 * 121.82784 * 180.02562 * 6 5 4 8 8 O 1.35730 * 119.27666 * 179.97438 * 7 6 5 9 9 C 1.39127 * 121.44960 * 359.70347 * 7 6 5 10 10 C 1.39562 * 119.22905 * 0.56838 * 9 7 6 11 11 C 1.47914 * 121.00646 * 179.74439 * 10 9 7 12 12 O 1.21548 * 120.00367 * 173.11201 * 11 10 9 13 13 N 1.34775 * 119.99771 * 353.11145 * 11 10 9 14 14 C 1.46500 * 119.99797 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47043 * 185.80098 * 14 13 11 16 16 H 1.08996 * 109.99687 * 305.15450 * 15 14 13 17 17 C 1.54329 * 109.88183 * 66.25028 * 15 14 13 18 18 C 1.55444 * 102.96743 * 141.61213 * 17 15 14 19 19 C 1.54910 * 101.45107 * 324.51388 * 18 17 15 20 20 N 1.47018 * 109.88475 * 184.05712 * 15 14 13 21 21 C 1.36941 * 125.65009 * 61.61913 * 20 15 14 22 22 H 1.08000 * 119.99497 * 14.94426 * 21 20 15 23 23 C 1.38807 * 120.00357 * 194.94087 * 21 20 15 24 24 N 1.31618 * 119.99937 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00188 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47120 * 60.00192 * 25 23 21 27 27 H 1.48499 * 109.47592 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47315 * 300.00536 * 25 23 21 29 29 C 1.37604 * 126.36749 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46926 * 254.52382 * 1 2 3 31 31 H 1.09001 * 109.47515 * 14.52630 * 1 2 3 32 32 H 1.09006 * 109.47008 * 134.52420 * 1 2 3 33 33 H 1.07999 * 124.96500 * 0.04276 * 3 2 1 34 34 H 0.96697 * 113.99839 * 89.99519 * 8 7 6 35 35 H 1.07992 * 120.38531 * 180.31367 * 9 7 6 36 36 H 0.97002 * 120.00248 * 359.97438 * 13 11 10 37 37 H 1.08998 * 109.47466 * 65.79868 * 14 13 11 38 38 H 1.09004 * 109.47301 * 305.79886 * 14 13 11 39 39 H 1.08998 * 110.71684 * 259.97609 * 17 15 14 40 40 H 1.09004 * 110.72040 * 23.24606 * 17 15 14 41 41 H 1.08999 * 111.11557 * 206.46158 * 18 17 15 42 42 H 1.08993 * 111.01621 * 82.52448 * 18 17 15 43 43 H 1.09001 * 110.36739 * 278.11071 * 19 18 17 44 44 H 1.09004 * 110.36643 * 155.90084 * 19 18 17 45 45 H 0.97004 * 120.00268 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0950 0.0000 4 7 3.5209 0.7297 -0.0005 5 6 3.6010 -0.6253 -0.0004 6 7 4.6235 -1.4775 -0.0012 7 6 4.4404 -2.7832 -0.0012 8 8 5.5207 -3.6049 -0.0026 9 6 3.1642 -3.3372 0.0056 10 6 2.0541 -2.4914 0.0007 11 6 0.6797 -3.0381 0.0021 12 8 -0.2714 -2.2912 0.1240 13 7 0.4820 -4.3645 -0.1319 14 6 -0.8793 -4.9059 -0.1311 15 6 -0.8202 -6.4347 -0.1512 16 1 -0.2213 -6.7735 -0.9965 17 6 -0.2083 -6.9536 1.1672 18 6 -1.0496 -8.2263 1.4651 19 6 -2.4474 -7.7977 0.9530 20 7 -2.1794 -6.9865 -0.2484 21 6 -3.0523 -6.7806 -1.2833 22 1 -2.6942 -6.3794 -2.2199 23 6 -4.3971 -7.0875 -1.1285 24 7 -4.8335 -7.5760 0.0131 25 14 -5.5879 -6.8059 -2.5400 26 1 -5.1675 -7.6162 -3.7114 27 1 -6.9546 -7.2100 -2.1228 28 1 -5.5882 -5.3671 -2.9078 29 6 2.2809 -1.1080 -0.0005 30 1 -0.3633 -0.2742 0.9904 31 1 -0.3634 0.9948 -0.2578 32 1 -0.3633 -0.7206 -0.7327 33 1 1.9253 2.1181 0.0007 34 1 5.8347 -3.8432 0.8804 35 1 3.0341 -4.4093 0.0106 36 1 1.2409 -4.9607 -0.2296 37 1 -1.4119 -4.5513 -1.0136 38 1 -1.4018 -4.5743 0.7662 39 1 0.8424 -7.2094 1.0302 40 1 -0.3267 -6.2182 1.9630 41 1 -1.0736 -8.4399 2.5336 42 1 -0.6742 -9.0829 0.9054 43 1 -2.9611 -7.2011 1.7069 44 1 -3.0417 -8.6741 0.6942 45 1 -5.7734 -7.7901 0.1214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027928987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:46 Heat of formation + Delta-G solvation = 34.327973 kcal Electronic energy + Delta-G solvation = -30211.843755 eV Core-core repulsion = 26038.256682 eV Total energy + Delta-G solvation = -4173.587072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.59031 -41.00080 -40.25136 -39.26956 -37.32377 -35.98079 -35.26080 -34.44538 -33.31185 -31.40331 -30.46335 -30.18018 -27.99766 -26.90301 -26.31299 -25.09906 -24.04698 -22.91275 -22.00367 -21.45985 -20.98786 -19.92808 -19.10830 -18.78331 -18.55051 -18.00889 -17.39218 -17.13132 -16.61894 -16.55330 -16.15625 -16.07860 -15.78213 -15.61103 -15.30789 -15.06414 -14.74140 -14.38625 -14.19779 -13.96366 -13.64385 -13.49784 -13.20751 -12.99654 -12.85446 -12.84147 -12.71114 -12.64088 -12.07042 -12.06320 -11.86214 -11.83129 -11.72877 -11.48741 -11.38971 -11.20241 -10.67048 -10.32144 -10.14409 -9.87254 -9.57220 -8.85545 -7.88594 -5.26204 -0.80626 -0.05584 1.18652 1.45287 1.47179 1.49338 1.53204 1.86286 1.93447 2.21458 2.48862 2.60500 3.06229 3.27309 3.31511 3.48518 3.70250 3.76232 3.92772 3.96201 3.99125 4.10582 4.14278 4.28147 4.44053 4.45691 4.52170 4.54451 4.65794 4.73828 4.81893 4.98423 5.01943 5.10142 5.15965 5.18018 5.23093 5.33484 5.47978 5.56600 5.67324 5.79308 5.94420 6.22909 6.33466 6.39209 6.69129 6.85559 7.03562 7.09243 7.76597 8.42244 9.22058 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002838 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.617225 B = 9862.447613 C =11223.035722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.476 5.476 3 C 0.305 3.695 4 N -0.528 5.528 5 C 0.245 3.755 6 N -0.485 5.485 7 C 0.331 3.669 8 O -0.476 6.476 9 C -0.123 4.123 10 C -0.060 4.060 11 C 0.552 3.448 12 O -0.558 6.558 13 N -0.691 5.691 14 C 0.131 3.869 15 C 0.146 3.854 16 H 0.053 0.947 17 C -0.114 4.114 18 C -0.134 4.134 19 C 0.173 3.827 20 N -0.610 5.610 21 C -0.240 4.240 22 H 0.078 0.922 23 C -0.057 4.057 24 N -0.945 5.945 25 Si 0.969 3.031 26 H -0.276 1.276 27 H -0.295 1.295 28 H -0.280 1.280 29 C 0.011 3.989 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.277 0.723 34 H 0.425 0.575 35 H 0.190 0.810 36 H 0.415 0.585 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.069 0.931 43 H -0.008 1.008 44 H 0.033 0.967 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.632 10.414 3.443 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.162 5.162 3 C 0.018 3.982 4 N -0.249 5.249 5 C 0.002 3.998 6 N -0.208 5.208 7 C 0.139 3.861 8 O -0.286 6.286 9 C -0.146 4.146 10 C -0.074 4.074 11 C 0.339 3.661 12 O -0.438 6.438 13 N -0.343 5.343 14 C 0.005 3.995 15 C 0.039 3.961 16 H 0.071 0.929 17 C -0.152 4.152 18 C -0.173 4.173 19 C 0.048 3.952 20 N -0.334 5.334 21 C -0.370 4.370 22 H 0.095 0.905 23 C -0.251 4.251 24 N -0.592 5.592 25 Si 0.798 3.202 26 H -0.201 1.201 27 H -0.222 1.222 28 H -0.206 1.206 29 C -0.105 4.105 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.105 0.895 33 H 0.292 0.708 34 H 0.287 0.713 35 H 0.207 0.793 36 H 0.253 0.747 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.010 0.990 44 H 0.052 0.948 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.042 11.735 2.895 20.893 hybrid contribution -2.300 -0.971 -0.206 2.505 sum 14.741 10.765 2.688 18.450 Atomic orbital electron populations 1.22533 0.72724 1.04970 1.04832 1.45498 1.09172 1.04582 1.56982 1.26714 0.83050 0.95370 0.93084 1.70357 1.20377 1.08662 1.25533 1.19172 0.85705 0.91263 1.03631 1.65843 1.35982 1.04343 1.14591 1.18671 0.86711 0.84558 0.96158 1.84816 1.45229 1.62281 1.36296 1.22400 0.89718 1.02534 0.99974 1.19200 0.93961 0.89876 1.04375 1.18316 0.88177 0.82790 0.76847 1.90795 1.44325 1.57449 1.51261 1.45771 1.10022 1.06647 1.71818 1.21786 0.81584 0.95895 1.00223 1.21367 0.87212 0.89600 0.97951 0.92882 1.22678 1.00161 0.96913 0.95403 1.22920 0.95603 0.97770 1.00999 1.21258 0.93580 0.93417 0.86921 1.44717 1.12603 1.55494 1.20592 1.19252 0.88362 1.37321 0.92019 0.90452 1.25654 0.98467 1.01768 0.99242 1.70129 1.14129 1.49700 1.25288 0.85297 0.78002 0.77989 0.78927 1.20138 1.22156 1.20644 1.19713 0.93529 0.89919 1.07379 0.91085 0.86366 0.89534 0.70773 0.71289 0.79263 0.74714 0.94109 0.93576 0.87461 0.91515 0.90032 0.91184 0.98962 0.94839 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 9.18 127.77 1.17 2.83 16 2 N -0.48 -10.03 3.19 -542.68 -1.73 -11.76 16 3 C 0.30 5.21 12.48 180.05 2.25 7.46 16 4 N -0.53 -13.67 11.27 -196.93 -2.22 -15.89 16 5 C 0.25 6.96 8.37 134.28 1.12 8.08 16 6 N -0.49 -13.55 10.41 -307.35 -3.20 -16.75 16 7 C 0.33 6.92 7.71 84.90 0.65 7.57 16 8 O -0.48 -7.30 13.55 -90.53 -1.23 -8.53 16 9 C -0.12 -2.19 9.52 22.80 0.22 -1.98 16 10 C -0.06 -1.42 5.91 -19.92 -0.12 -1.54 16 11 C 0.55 14.74 7.78 86.81 0.67 15.41 16 12 O -0.56 -17.80 11.06 -3.87 -0.04 -17.84 16 13 N -0.69 -16.77 5.30 -465.90 -2.47 -19.24 16 14 C 0.13 4.43 5.10 86.38 0.44 4.87 16 15 C 0.15 5.01 3.20 45.34 0.15 5.16 16 16 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 17 C -0.11 -3.03 6.20 31.89 0.20 -2.83 16 18 C -0.13 -4.29 7.11 32.09 0.23 -4.06 16 19 C 0.17 8.00 5.40 86.86 0.47 8.46 16 20 N -0.61 -28.74 3.13 -668.25 -2.09 -30.83 16 21 C -0.24 -12.76 9.73 84.03 0.82 -11.94 16 22 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.06 -3.16 5.47 84.86 0.46 -2.70 16 24 N -0.94 -55.29 10.58 21.65 0.23 -55.06 16 25 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 29 C 0.01 0.28 6.80 39.28 0.27 0.55 16 30 H 0.07 1.50 7.48 -2.39 -0.02 1.48 16 31 H 0.12 1.13 8.10 -2.39 -0.02 1.11 16 32 H 0.09 2.12 5.78 -3.85 -0.02 2.10 16 33 H 0.28 1.20 8.06 -2.91 -0.02 1.17 16 34 H 0.43 1.90 9.06 -74.06 -0.67 1.23 16 35 H 0.19 1.85 6.58 -2.91 -0.02 1.83 16 36 H 0.41 6.98 6.58 -92.71 -0.61 6.37 16 37 H 0.04 1.63 7.87 -2.39 -0.02 1.61 16 38 H 0.05 1.79 8.03 -2.39 -0.02 1.77 16 39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 1.77 7.78 -2.38 -0.02 1.76 16 41 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H -0.01 -0.40 8.05 -2.39 -0.02 -0.42 16 44 H 0.03 1.77 6.95 -2.39 -0.02 1.75 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -81.32 368.36 -1.95 -83.27 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -0.23 Total: 10.52 kcal Atomic # 6 Polarization: 26.35 SS G_CDS: 9.00 Total: 35.35 kcal Atomic # 7 Polarization: -138.05 SS G_CDS: -11.48 Total: -149.53 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -1.27 Total: -26.37 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -81.32 -1.95 -83.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027928987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.596 kcal (2) G-P(sol) polarization free energy of solvation -81.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds