Wall clock time and date at job start Wed Apr 1 2020 03:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34456 * 125.76650 * 2 1 4 4 C 1.38071 * 107.39244 * 179.97438 * 3 2 1 5 5 C 1.47351 * 126.41504 * 180.02562 * 4 3 2 6 6 O 1.34259 * 127.19506 * 49.50979 * 5 4 3 7 7 N 1.20738 * 111.95071 * 179.79050 * 6 5 4 8 8 C 1.29870 * 112.81622 * 0.50421 * 7 6 5 9 9 C 1.39928 * 127.19621 * 229.83050 * 5 4 3 10 10 C 1.46909 * 128.39778 * 0.02562 * 9 5 4 11 11 O 1.21670 * 119.99972 * 4.18726 * 10 9 5 12 12 N 1.34781 * 120.00149 * 184.18884 * 10 9 5 13 13 C 1.46501 * 120.00052 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47142 * 184.35632 * 13 12 10 15 15 H 1.09007 * 109.87265 * 57.49120 * 14 13 12 16 16 C 1.54317 * 109.88567 * 296.47668 * 14 13 12 17 17 C 1.55158 * 102.94359 * 218.38684 * 16 14 13 18 18 C 1.54916 * 101.57914 * 35.50048 * 17 16 14 19 19 N 1.47025 * 109.88118 * 178.66501 * 14 13 12 20 20 C 1.36930 * 125.64835 * 298.33738 * 19 14 13 21 21 H 1.08001 * 120.00307 * 343.00031 * 20 19 14 22 22 C 1.38817 * 120.00121 * 162.99655 * 20 19 14 23 23 N 1.31622 * 119.99466 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00354 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46997 * 90.00182 * 24 22 20 26 26 H 1.48496 * 109.47198 * 209.99754 * 24 22 20 27 27 H 1.48495 * 109.47270 * 330.00154 * 24 22 20 28 28 C 1.41311 * 107.17611 * 359.97438 * 4 3 2 29 29 N 1.30473 * 108.05611 * 359.74055 * 28 4 3 30 30 H 1.09004 * 109.47184 * 89.99978 * 1 2 3 31 31 H 1.08993 * 109.47671 * 329.99625 * 1 2 3 32 32 H 1.09010 * 109.46839 * 209.99501 * 1 2 3 33 33 H 1.07995 * 126.30586 * 0.02562 * 3 2 1 34 34 H 1.07995 * 126.79761 * 179.71615 * 8 7 6 35 35 H 0.96998 * 119.99937 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.47111 * 304.36361 * 13 12 10 37 37 H 1.09003 * 109.46688 * 64.35793 * 13 12 10 38 38 H 1.08996 * 110.72213 * 336.75208 * 16 14 13 39 39 H 1.09001 * 110.72059 * 100.02714 * 16 14 13 40 40 H 1.08999 * 111.00473 * 153.57383 * 17 16 14 41 41 H 1.09000 * 111.00646 * 277.42621 * 17 16 14 42 42 H 1.09004 * 110.36100 * 81.82905 * 18 17 16 43 43 H 1.08997 * 110.36368 * 204.03937 * 18 17 16 44 44 H 0.97007 * 119.99678 * 179.97438 * 23 22 20 45 45 H 1.08005 * 125.96900 * 180.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2508 1.0910 0.0000 4 6 3.5611 0.6558 0.0006 5 6 4.7650 1.5054 0.0013 6 8 5.0274 2.5406 0.8150 7 7 6.0999 3.0413 0.5768 8 6 6.7191 2.4617 -0.4067 9 6 5.8712 1.4058 -0.8499 10 6 6.1021 0.4457 -1.9375 11 8 5.2348 -0.3528 -2.2385 12 7 7.2747 0.4492 -2.6020 13 6 7.5052 -0.5086 -3.6863 14 6 8.9408 -0.3664 -4.1959 15 1 9.6421 -0.5205 -3.3757 16 6 9.1451 1.0369 -4.8044 17 6 10.0512 0.7549 -6.0319 18 6 9.5153 -0.6196 -6.5047 19 7 9.1918 -1.3459 -5.2632 20 6 9.1350 -2.7071 -5.1267 21 1 9.1634 -3.1529 -4.1434 22 6 9.0410 -3.5143 -6.2521 23 7 9.0059 -2.9710 -7.4504 24 14 8.9629 -5.3713 -6.0658 25 1 7.5453 -5.7977 -5.9470 26 1 9.5749 -6.0144 -7.2562 27 1 9.7061 -5.7782 -4.8463 28 6 3.5316 -0.7570 0.0016 29 7 2.2829 -1.1354 0.0072 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 0.8899 0.5138 32 1 -0.3633 -0.8901 0.5138 33 1 1.9184 2.1185 0.0004 34 1 7.6855 2.7271 -0.8089 35 1 7.9661 1.0860 -2.3623 36 1 7.3500 -1.5217 -3.3152 37 1 6.8090 -0.3095 -4.5010 38 1 8.1925 1.4637 -5.1182 39 1 9.6490 1.6947 -4.0962 40 1 9.9132 1.5138 -6.8020 41 1 11.0982 0.6856 -5.7371 42 1 8.6197 -0.4890 -7.1121 43 1 10.2812 -1.1517 -7.0689 44 1 8.9405 -3.5351 -8.2370 45 1 4.3923 -1.4095 0.0026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028047428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:14 Heat of formation + Delta-G solvation = 135.683426 kcal Electronic energy + Delta-G solvation = -29712.666952 eV Core-core repulsion = 25543.474982 eV Total energy + Delta-G solvation = -4169.191970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -45.01789 -41.33779 -39.32100 -37.59823 -34.38345 -34.15454 -33.73068 -32.46921 -32.40695 -29.92637 -29.56826 -28.71370 -27.07993 -25.43860 -24.55983 -23.57176 -22.86520 -21.30608 -21.03152 -20.46450 -20.03264 -19.47640 -18.38111 -17.75191 -17.38760 -16.65356 -16.14276 -15.73689 -15.72316 -15.03041 -14.83592 -14.73851 -14.51975 -14.21169 -13.83376 -13.58738 -13.40048 -13.21147 -13.08928 -12.97069 -12.70908 -12.13213 -11.89875 -11.85742 -11.77545 -11.34104 -11.06413 -10.92679 -10.79745 -10.64186 -10.22804 -10.11785 -10.00151 -9.90755 -9.86470 -9.81271 -9.73101 -9.63381 -8.72339 -8.57766 -8.45189 -6.82464 -5.78412 -3.15380 0.72891 1.61394 1.73558 2.09813 2.44338 2.88326 3.39836 3.41963 3.44907 3.47098 3.48531 4.08968 4.16233 4.42983 4.49073 4.52682 4.62209 4.78415 4.93375 5.04588 5.08511 5.25440 5.32588 5.38606 5.44289 5.49584 5.54670 5.61603 5.68445 5.79450 6.04315 6.13395 6.22372 6.30692 6.45007 6.53790 6.57046 6.59787 6.68740 6.81102 7.04985 7.40962 7.48332 7.61349 7.75194 7.78124 8.00069 8.24681 8.45279 9.16618 9.77170 10.45189 11.34224 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.002836 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.269748 B = 9871.642698 C =11689.501792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.365 5.365 3 C 0.099 3.901 4 C -0.193 4.193 5 C 0.128 3.872 6 O 0.102 5.898 7 N -0.368 5.368 8 C 0.028 3.972 9 C -0.246 4.246 10 C 0.587 3.413 11 O -0.527 6.527 12 N -0.714 5.714 13 C 0.112 3.888 14 C 0.151 3.849 15 H 0.038 0.962 16 C -0.128 4.128 17 C -0.148 4.148 18 C 0.173 3.827 19 N -0.587 5.587 20 C -0.235 4.235 21 H 0.075 0.925 22 C 0.001 3.999 23 N -0.914 5.914 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.125 3.875 29 N -0.297 5.297 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.184 0.816 34 H 0.198 0.802 35 H 0.394 0.606 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.067 0.933 44 H 0.254 0.746 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 13.514 15.273 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.144 5.144 3 C -0.051 4.051 4 C -0.206 4.206 5 C 0.061 3.939 6 O 0.041 5.959 7 N -0.073 5.073 8 C -0.152 4.152 9 C -0.254 4.254 10 C 0.372 3.628 11 O -0.404 6.404 12 N -0.365 5.365 13 C -0.013 4.013 14 C 0.043 3.957 15 H 0.056 0.944 16 C -0.166 4.166 17 C -0.187 4.187 18 C 0.049 3.951 19 N -0.312 5.312 20 C -0.364 4.364 21 H 0.093 0.907 22 C -0.197 4.197 23 N -0.560 5.560 24 Si 0.740 3.260 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.062 4.062 29 N -0.116 5.116 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.201 0.799 34 H 0.215 0.785 35 H 0.227 0.773 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.829 12.722 15.661 23.910 hybrid contribution 0.877 -0.425 -0.581 1.134 sum -11.952 12.297 15.080 22.836 Atomic orbital electron populations 1.21965 0.73491 1.04815 1.03956 1.48310 1.07150 1.03810 1.55110 1.22911 0.89943 0.93766 0.98524 1.17642 0.88233 0.92007 1.22712 1.22012 0.94108 0.88470 0.89298 1.84873 1.28479 1.35711 1.46833 1.73522 0.94888 1.20624 1.18292 1.25011 1.01926 0.93913 0.94344 1.21559 0.97124 1.03173 1.03511 1.16738 0.82811 0.82629 0.80644 1.90856 1.43506 1.39359 1.66689 1.45954 1.15969 1.38006 1.36587 1.22270 0.99437 0.92061 0.87531 1.21146 0.92065 0.89879 0.92627 0.94416 1.22623 0.99742 0.96240 0.97998 1.23000 0.98659 1.00120 0.96931 1.21412 0.98213 0.87153 0.88363 1.44455 1.79916 1.01002 1.05799 1.18965 1.44480 0.79867 0.93068 0.90699 1.24957 1.00957 0.98313 0.95467 1.69940 1.55356 1.33721 0.96935 0.86163 0.77859 0.85019 0.76999 1.21326 1.21671 1.20523 1.23913 0.95022 0.92741 0.94540 1.77298 1.01593 1.07248 1.25484 0.90213 0.89170 0.88823 0.79865 0.78495 0.77252 0.90966 0.91772 0.91754 0.92385 0.92336 0.92290 0.95392 0.91445 0.93589 0.79303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.44 59.84 0.68 1.18 16 2 N -0.37 -3.62 3.99 -67.54 -0.27 -3.89 16 3 C 0.10 0.92 11.51 -16.46 -0.19 0.74 16 4 C -0.19 -2.33 5.52 -105.08 -0.58 -2.91 16 5 C 0.13 1.56 7.39 -35.24 -0.26 1.30 16 6 O 0.10 1.18 11.17 16.64 0.19 1.37 16 7 N -0.37 -4.34 11.97 30.85 0.37 -3.97 16 8 C 0.03 0.29 11.68 -16.75 -0.20 0.10 16 9 C -0.25 -3.15 6.36 -104.12 -0.66 -3.81 16 10 C 0.59 9.14 7.80 -12.75 -0.10 9.04 16 11 O -0.53 -10.08 14.71 5.22 0.08 -10.01 16 12 N -0.71 -10.41 5.37 -61.54 -0.33 -10.75 16 13 C 0.11 2.10 5.06 -4.04 -0.02 2.08 16 14 C 0.15 2.90 3.26 -66.96 -0.22 2.68 16 15 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.13 -2.04 5.91 -24.90 -0.15 -2.19 16 17 C -0.15 -2.64 7.09 -24.58 -0.17 -2.82 16 18 C 0.17 4.06 5.38 -2.53 -0.01 4.05 16 19 N -0.59 -14.33 3.13 -162.57 -0.51 -14.84 16 20 C -0.24 -6.39 9.77 -15.06 -0.15 -6.53 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C 0.00 0.02 5.46 -17.43 -0.10 -0.08 16 23 N -0.91 -26.46 10.68 55.49 0.59 -25.87 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.13 1.69 10.45 -16.96 -0.18 1.51 16 29 N -0.30 -3.97 12.50 30.87 0.39 -3.59 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.20 1.41 7.76 -52.49 -0.41 1.01 16 35 H 0.39 4.47 7.37 -40.82 -0.30 4.17 16 36 H 0.07 1.55 7.95 -51.93 -0.41 1.14 16 37 H 0.06 1.35 8.11 -51.93 -0.42 0.93 16 38 H 0.06 1.01 7.82 -51.93 -0.41 0.61 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.72 8.01 -51.93 -0.42 0.30 16 43 H 0.07 1.76 7.11 -51.93 -0.37 1.39 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.19 2.50 7.93 -52.48 -0.42 2.08 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -34.80 381.70 -7.14 -41.94 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.08 Total: 2.48 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -2.30 Total: 4.34 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.24 Total: -62.90 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.26 Total: -8.64 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.80 -7.14 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028047428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.624 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds