Wall clock time and date at job start Wed Apr 1 2020 03:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34456 * 125.76650 * 2 1 4 4 C 1.38071 * 107.39244 * 179.97438 * 3 2 1 5 5 C 1.47351 * 126.41504 * 180.02562 * 4 3 2 6 6 O 1.34259 * 127.19506 * 49.50979 * 5 4 3 7 7 N 1.20738 * 111.95071 * 179.79050 * 6 5 4 8 8 C 1.29870 * 112.81622 * 0.50421 * 7 6 5 9 9 C 1.39928 * 127.19621 * 229.83050 * 5 4 3 10 10 C 1.46909 * 128.39778 * 0.02562 * 9 5 4 11 11 O 1.21670 * 119.99972 * 4.18726 * 10 9 5 12 12 N 1.34781 * 120.00149 * 184.18884 * 10 9 5 13 13 C 1.46501 * 120.00052 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47142 * 184.35632 * 13 12 10 15 15 H 1.09007 * 109.87265 * 57.49120 * 14 13 12 16 16 C 1.54317 * 109.88567 * 296.47668 * 14 13 12 17 17 C 1.55158 * 102.94359 * 218.38684 * 16 14 13 18 18 C 1.54916 * 101.57914 * 35.50048 * 17 16 14 19 19 N 1.47025 * 109.88118 * 178.66501 * 14 13 12 20 20 C 1.36930 * 125.64835 * 298.33738 * 19 14 13 21 21 H 1.08001 * 120.00307 * 343.00031 * 20 19 14 22 22 C 1.38817 * 120.00121 * 162.99655 * 20 19 14 23 23 N 1.31622 * 119.99466 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00354 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46997 * 90.00182 * 24 22 20 26 26 H 1.48496 * 109.47198 * 209.99754 * 24 22 20 27 27 H 1.48495 * 109.47270 * 330.00154 * 24 22 20 28 28 C 1.41311 * 107.17611 * 359.97438 * 4 3 2 29 29 N 1.30473 * 108.05611 * 359.74055 * 28 4 3 30 30 H 1.09004 * 109.47184 * 89.99978 * 1 2 3 31 31 H 1.08993 * 109.47671 * 329.99625 * 1 2 3 32 32 H 1.09010 * 109.46839 * 209.99501 * 1 2 3 33 33 H 1.07995 * 126.30586 * 0.02562 * 3 2 1 34 34 H 1.07995 * 126.79761 * 179.71615 * 8 7 6 35 35 H 0.96998 * 119.99937 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.47111 * 304.36361 * 13 12 10 37 37 H 1.09003 * 109.46688 * 64.35793 * 13 12 10 38 38 H 1.08996 * 110.72213 * 336.75208 * 16 14 13 39 39 H 1.09001 * 110.72059 * 100.02714 * 16 14 13 40 40 H 1.08999 * 111.00473 * 153.57383 * 17 16 14 41 41 H 1.09000 * 111.00646 * 277.42621 * 17 16 14 42 42 H 1.09004 * 110.36100 * 81.82905 * 18 17 16 43 43 H 1.08997 * 110.36368 * 204.03937 * 18 17 16 44 44 H 0.97007 * 119.99678 * 179.97438 * 23 22 20 45 45 H 1.08005 * 125.96900 * 180.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2508 1.0910 0.0000 4 6 3.5611 0.6558 0.0006 5 6 4.7650 1.5054 0.0013 6 8 5.0274 2.5406 0.8150 7 7 6.0999 3.0413 0.5768 8 6 6.7191 2.4617 -0.4067 9 6 5.8712 1.4058 -0.8499 10 6 6.1021 0.4457 -1.9375 11 8 5.2348 -0.3528 -2.2385 12 7 7.2747 0.4492 -2.6020 13 6 7.5052 -0.5086 -3.6863 14 6 8.9408 -0.3664 -4.1959 15 1 9.6421 -0.5205 -3.3757 16 6 9.1451 1.0369 -4.8044 17 6 10.0512 0.7549 -6.0319 18 6 9.5153 -0.6196 -6.5047 19 7 9.1918 -1.3459 -5.2632 20 6 9.1350 -2.7071 -5.1267 21 1 9.1634 -3.1529 -4.1434 22 6 9.0410 -3.5143 -6.2521 23 7 9.0059 -2.9710 -7.4504 24 14 8.9629 -5.3713 -6.0658 25 1 7.5453 -5.7977 -5.9470 26 1 9.5749 -6.0144 -7.2562 27 1 9.7061 -5.7782 -4.8463 28 6 3.5316 -0.7570 0.0016 29 7 2.2829 -1.1354 0.0072 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 0.8899 0.5138 32 1 -0.3633 -0.8901 0.5138 33 1 1.9184 2.1185 0.0004 34 1 7.6855 2.7271 -0.8089 35 1 7.9661 1.0860 -2.3623 36 1 7.3500 -1.5217 -3.3152 37 1 6.8090 -0.3095 -4.5010 38 1 8.1925 1.4637 -5.1182 39 1 9.6490 1.6947 -4.0962 40 1 9.9132 1.5138 -6.8020 41 1 11.0982 0.6856 -5.7371 42 1 8.6197 -0.4890 -7.1121 43 1 10.2812 -1.1517 -7.0689 44 1 8.9405 -3.5351 -8.2370 45 1 4.3923 -1.4095 0.0026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028047428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:13 Heat of formation + Delta-G solvation = 111.266623 kcal Electronic energy + Delta-G solvation = -29713.725744 eV Core-core repulsion = 25543.474982 eV Total energy + Delta-G solvation = -4170.250762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.89728 -42.16230 -40.65648 -39.19788 -35.78396 -35.05411 -34.64779 -34.31993 -33.27442 -31.44631 -30.77162 -30.17406 -27.77281 -26.87857 -26.25444 -24.82891 -23.81785 -22.31279 -21.99243 -21.84881 -21.33558 -20.98968 -19.40682 -18.75011 -18.60577 -18.15056 -17.32829 -16.94475 -16.58059 -16.42469 -16.25762 -15.99080 -15.75520 -15.48390 -15.33231 -14.58559 -14.55499 -14.29897 -14.06192 -13.97156 -13.65435 -13.64044 -13.40449 -13.28877 -12.99010 -12.83470 -12.71688 -12.68962 -12.00480 -11.93659 -11.86252 -11.67224 -11.53809 -11.46742 -11.36146 -11.13520 -10.85484 -10.67491 -10.53398 -10.06534 -9.34318 -8.82337 -7.89466 -5.26728 -0.20473 0.79757 0.86297 1.35631 1.43776 1.46609 1.53725 1.56714 1.88580 2.24648 2.29572 2.50466 3.25883 3.31673 3.37696 3.61660 3.76058 3.83236 3.87348 3.96673 4.03171 4.13512 4.22988 4.30230 4.43698 4.45396 4.49091 4.58652 4.66530 4.67046 4.73163 4.77309 4.86306 5.01056 5.03838 5.18063 5.23745 5.36510 5.39303 5.48184 5.60212 5.67531 5.79743 5.92808 6.23948 6.53849 6.58295 7.09812 7.11555 7.25887 7.77100 8.43486 9.22157 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.002836 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.269748 B = 9871.642698 C =11689.501792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.362 5.362 3 C 0.120 3.880 4 C -0.224 4.224 5 C 0.142 3.858 6 O 0.102 5.898 7 N -0.380 5.380 8 C 0.048 3.952 9 C -0.267 4.267 10 C 0.589 3.411 11 O -0.569 6.569 12 N -0.698 5.698 13 C 0.134 3.866 14 C 0.147 3.853 15 H 0.052 0.948 16 C -0.114 4.114 17 C -0.133 4.133 18 C 0.174 3.826 19 N -0.610 5.610 20 C -0.239 4.239 21 H 0.075 0.925 22 C -0.058 4.058 23 N -0.944 5.944 24 Si 0.968 3.032 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.267 1.267 28 C 0.107 3.893 29 N -0.334 5.334 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.230 0.770 34 H 0.235 0.765 35 H 0.415 0.585 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.071 0.929 42 H -0.007 1.007 43 H 0.030 0.970 44 H 0.247 0.753 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 16.572 17.238 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.140 5.140 3 C -0.032 4.032 4 C -0.238 4.238 5 C 0.074 3.926 6 O 0.044 5.956 7 N -0.087 5.087 8 C -0.131 4.131 9 C -0.275 4.275 10 C 0.376 3.624 11 O -0.450 6.450 12 N -0.350 5.350 13 C 0.008 3.992 14 C 0.040 3.960 15 H 0.070 0.930 16 C -0.152 4.152 17 C -0.172 4.172 18 C 0.049 3.951 19 N -0.334 5.334 20 C -0.368 4.368 21 H 0.093 0.907 22 C -0.252 4.252 23 N -0.592 5.592 24 Si 0.797 3.203 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.192 1.192 28 C -0.079 4.079 29 N -0.155 5.155 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.113 0.887 33 H 0.246 0.754 34 H 0.251 0.749 35 H 0.252 0.748 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.011 0.989 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.983 15.815 17.687 27.046 hybrid contribution 0.806 -1.347 -1.119 1.927 sum -12.177 14.468 16.569 25.142 Atomic orbital electron populations 1.22404 0.70744 1.06904 1.05105 1.48729 1.08638 1.03072 1.53599 1.23582 0.88742 0.95299 0.95550 1.17832 0.89604 0.91424 1.24912 1.22080 0.93834 0.88049 0.88593 1.84888 1.28647 1.35504 1.46544 1.73522 0.95095 1.21182 1.18933 1.25478 1.02498 0.92073 0.93083 1.21248 0.98705 1.03951 1.03597 1.17051 0.82166 0.82381 0.80773 1.90844 1.44919 1.41212 1.67978 1.45583 1.16548 1.37521 1.35356 1.21676 0.98667 0.91237 0.87638 1.21363 0.91919 0.90840 0.91891 0.92990 1.22632 1.00093 0.94594 0.97871 1.22866 0.99345 0.96685 0.98275 1.21232 0.95851 0.90147 0.87839 1.44717 1.80240 1.01076 1.07399 1.19267 1.42853 0.81791 0.92930 0.90709 1.25692 1.01862 1.02215 0.95410 1.70133 1.57151 1.34589 0.97291 0.85235 0.77380 0.80553 0.77159 1.21874 1.21797 1.19192 1.23825 0.94977 0.93698 0.95429 1.77198 1.02008 1.09490 1.26768 0.89467 0.85225 0.88691 0.75382 0.74903 0.74790 0.94519 0.94649 0.91418 0.87266 0.89915 0.91078 0.98891 0.95174 0.94337 0.80760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 11.44 127.77 1.46 2.14 16 2 N -0.36 -6.68 3.99 -367.61 -1.47 -8.14 16 3 C 0.12 1.98 11.51 84.25 0.97 2.95 16 4 C -0.22 -5.30 5.52 -20.16 -0.11 -5.41 16 5 C 0.14 3.28 7.39 25.08 0.19 3.46 16 6 O 0.10 2.14 11.17 69.77 0.78 2.92 16 7 N -0.38 -7.88 11.97 -56.82 -0.68 -8.56 16 8 C 0.05 0.87 11.68 86.04 1.01 1.87 16 9 C -0.27 -6.42 6.36 -19.54 -0.12 -6.55 16 10 C 0.59 18.11 7.80 86.51 0.67 18.79 16 11 O -0.57 -22.56 14.71 -4.25 -0.06 -22.62 16 12 N -0.70 -19.35 5.37 -466.85 -2.51 -21.86 16 13 C 0.13 5.08 5.06 86.38 0.44 5.51 16 14 C 0.15 5.45 3.26 45.34 0.15 5.60 16 15 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 16 C -0.11 -3.23 5.91 31.78 0.19 -3.05 16 17 C -0.13 -4.42 7.09 31.99 0.23 -4.20 16 18 C 0.17 8.36 5.38 86.86 0.47 8.82 16 19 N -0.61 -30.26 3.13 -668.26 -2.09 -32.35 16 20 C -0.24 -13.33 9.77 84.04 0.82 -12.51 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 22 C -0.06 -3.32 5.46 84.86 0.46 -2.86 16 23 N -0.94 -57.16 10.68 21.65 0.23 -56.93 16 24 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 28 C 0.11 3.02 10.45 85.65 0.90 3.92 16 29 N -0.33 -9.16 12.50 -56.24 -0.70 -9.86 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.23 1.43 8.06 -2.91 -0.02 1.40 16 34 H 0.23 2.16 7.76 -2.91 -0.02 2.14 16 35 H 0.41 7.94 7.37 -92.71 -0.68 7.26 16 36 H 0.04 1.64 7.95 -2.39 -0.02 1.62 16 37 H 0.04 1.54 8.11 -2.39 -0.02 1.52 16 38 H 0.07 1.91 7.82 -2.39 -0.02 1.89 16 39 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H -0.01 -0.38 8.01 -2.38 -0.02 -0.40 16 43 H 0.03 1.63 7.11 -2.39 -0.02 1.62 16 44 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 45 H 0.18 5.12 7.93 -2.91 -0.02 5.09 16 Total: -1.00 -82.25 381.70 3.59 -78.67 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.35 Total: 11.43 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 7.71 Total: 18.50 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -7.21 Total: -137.70 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.72 Total: -19.70 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -82.25 3.59 -78.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028047428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.932 kcal (2) G-P(sol) polarization free energy of solvation -82.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds