Wall clock time and date at job start Wed Apr 1 2020 03:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35964 * 126.35831 * 2 1 4 4 N 1.30212 * 110.06537 * 179.81576 * 3 2 1 5 5 C 1.35732 * 109.67788 * 0.45613 * 4 3 2 6 6 N 1.33103 * 133.19667 * 179.69964 * 5 4 3 7 7 C 1.31844 * 121.82917 * 180.02562 * 6 5 4 8 8 O 1.35729 * 119.27742 * 180.02562 * 7 6 5 9 9 C 1.39129 * 121.44784 * 359.97438 * 7 6 5 10 10 C 1.39567 * 119.23114 * 0.02562 * 9 7 6 11 11 C 1.47913 * 121.00560 * 179.97438 * 10 9 7 12 12 O 1.21545 * 119.99779 * 138.98487 * 11 10 9 13 13 N 1.34776 * 120.00300 * 318.98443 * 11 10 9 14 14 C 1.46498 * 120.00049 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47011 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.64351 * 305.70804 * 15 14 13 17 17 C 1.55158 * 110.72123 * 182.56236 * 15 14 13 18 18 C 1.54906 * 101.58427 * 206.13798 * 17 15 14 19 19 N 1.47424 * 104.83236 * 37.00644 * 18 17 15 20 20 C 1.36938 * 125.65030 * 155.90205 * 19 18 17 21 21 H 1.07999 * 120.00533 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99644 * 359.97438 * 20 19 18 23 23 N 1.31613 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99862 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46974 * 89.99781 * 24 22 20 26 26 H 1.48494 * 109.47289 * 209.99824 * 24 22 20 27 27 H 1.48499 * 109.47354 * 330.00173 * 24 22 20 28 28 C 1.47318 * 108.73623 * 335.71982 * 19 18 17 29 29 C 1.37602 * 126.36747 * 180.31162 * 2 1 3 30 30 H 1.08998 * 109.46815 * 263.00057 * 1 2 3 31 31 H 1.09002 * 109.46554 * 143.00192 * 1 2 3 32 32 H 1.08994 * 109.47249 * 23.00214 * 1 2 3 33 33 H 1.07998 * 124.97289 * 0.02562 * 3 2 1 34 34 H 0.96699 * 114.00046 * 269.97613 * 8 7 6 35 35 H 1.07993 * 120.38253 * 179.97438 * 9 7 6 36 36 H 0.97000 * 119.99563 * 0.02562 * 13 11 10 37 37 H 1.08995 * 109.47350 * 300.00599 * 14 13 11 38 38 H 1.09001 * 109.46511 * 60.00747 * 14 13 11 39 39 H 1.09003 * 111.00000 * 324.21200 * 17 15 14 40 40 H 1.09006 * 111.00372 * 88.02111 * 17 15 14 41 41 H 1.08998 * 110.36953 * 155.84918 * 18 17 15 42 42 H 1.09001 * 110.36832 * 278.06482 * 18 17 15 43 43 H 0.96999 * 120.00020 * 179.97438 * 23 22 20 44 44 H 1.09002 * 110.06327 * 241.86653 * 28 19 18 45 45 H 1.09005 * 109.85385 * 120.61236 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0950 0.0000 4 7 3.5209 0.7296 0.0039 5 6 3.6011 -0.6253 -0.0035 6 7 4.6235 -1.4775 -0.0085 7 6 4.4405 -2.7831 -0.0160 8 8 5.5208 -3.6048 -0.0203 9 6 3.1643 -3.3371 -0.0185 10 6 2.0541 -2.4913 -0.0135 11 6 0.6797 -3.0381 -0.0165 12 8 -0.1784 -2.5287 0.6774 13 7 0.3789 -4.1010 -0.7886 14 6 -0.9822 -4.6428 -0.7911 15 6 -1.0538 -5.8375 -1.7442 16 1 -0.6962 -5.5599 -2.7358 17 6 -2.5000 -6.3948 -1.8183 18 6 -2.2444 -7.8721 -2.2078 19 7 -1.0217 -8.2494 -1.4757 20 6 -0.6623 -9.5234 -1.1252 21 1 0.2582 -9.6963 -0.5874 22 6 -1.4813 -10.5928 -1.4611 23 7 -2.6033 -10.3821 -2.1160 24 14 -0.9907 -12.3308 -0.9836 25 1 -1.5431 -12.6503 0.3574 26 1 -1.5294 -13.2891 -1.9820 27 1 0.4901 -12.4348 -0.9465 28 6 -0.2477 -7.0296 -1.1870 29 6 2.2810 -1.1080 -0.0060 30 1 -0.3633 -0.1252 1.0200 31 1 -0.3632 -0.8208 -0.6185 32 1 -0.3633 0.9459 -0.4016 33 1 1.9254 2.1181 0.0004 34 1 5.8339 -3.8382 -0.9050 35 1 3.0342 -4.4092 -0.0251 36 1 1.0639 -4.5077 -1.3420 37 1 -1.2467 -4.9654 0.2159 38 1 -1.6792 -3.8723 -1.1207 39 1 -2.9951 -6.3261 -0.8497 40 1 -3.0775 -5.8816 -2.5873 41 1 -3.0813 -8.4969 -1.8959 42 1 -2.0869 -7.9593 -3.2828 43 1 -3.1753 -11.1293 -2.3510 44 1 0.7254 -7.0799 -1.6756 45 1 -0.1188 -6.9191 -0.1103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028590003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:49 Heat of formation + Delta-G solvation = 51.966151 kcal Electronic energy + Delta-G solvation = -29763.021395 eV Core-core repulsion = 25590.199171 eV Total energy + Delta-G solvation = -4172.822223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84548 -40.10172 -39.45194 -37.79153 -36.58616 -34.95561 -34.60554 -32.88788 -32.22245 -29.91319 -29.57445 -28.42287 -27.39779 -25.98058 -24.95662 -23.59842 -23.33206 -22.04584 -20.71903 -20.10430 -19.82315 -19.08060 -18.35314 -17.71949 -17.27080 -16.85915 -16.60595 -16.09330 -15.81996 -15.49322 -15.17507 -14.86964 -14.70651 -14.51013 -14.13205 -13.81302 -13.69490 -13.59777 -13.24148 -12.61771 -12.61555 -12.15456 -12.09514 -11.90433 -11.82800 -11.61488 -11.21366 -11.07772 -11.02558 -10.85600 -10.70893 -10.44535 -10.18637 -10.11073 -9.89566 -9.64166 -9.50082 -9.28067 -9.11478 -8.81413 -8.71757 -6.91501 -5.72256 -3.14251 0.05768 0.72018 1.95302 2.09176 2.52762 2.77724 2.95299 3.35938 3.38028 3.41211 3.42871 3.84974 3.94778 4.30218 4.30706 4.43105 4.50005 4.67717 4.85257 4.91770 4.94281 5.08752 5.17985 5.26175 5.29589 5.39453 5.44601 5.55892 5.69034 5.73078 5.88020 5.89115 5.94910 6.14613 6.23103 6.43347 6.46173 6.52184 6.58526 6.77725 7.02374 7.18121 7.28602 7.42383 7.55423 7.62068 7.77798 7.81337 8.28953 9.15113 9.75821 10.39785 11.31789 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016456 B = 0.002412 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.064049 B =11605.465138 C =13023.257718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.477 5.477 3 C 0.289 3.711 4 N -0.485 5.485 5 C 0.271 3.729 6 N -0.453 5.453 7 C 0.331 3.669 8 O -0.473 6.473 9 C -0.138 4.138 10 C -0.052 4.052 11 C 0.556 3.444 12 O -0.531 6.531 13 N -0.709 5.709 14 C 0.131 3.869 15 C -0.116 4.116 16 H 0.077 0.923 17 C -0.134 4.134 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.922 5.922 24 Si 0.915 3.085 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.140 3.860 29 C 0.026 3.974 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.227 0.773 34 H 0.404 0.596 35 H 0.160 0.840 36 H 0.405 0.595 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.012 0.988 43 H 0.253 0.747 44 H 0.019 0.981 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 21.636 0.127 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.165 5.165 3 C 0.001 3.999 4 N -0.206 5.206 5 C 0.028 3.972 6 N -0.174 5.174 7 C 0.139 3.861 8 O -0.279 6.279 9 C -0.162 4.162 10 C -0.066 4.066 11 C 0.342 3.658 12 O -0.409 6.409 13 N -0.359 5.359 14 C 0.008 3.992 15 C -0.135 4.135 16 H 0.095 0.905 17 C -0.174 4.174 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.745 3.255 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.014 3.986 29 C -0.089 4.089 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.243 0.757 34 H 0.262 0.738 35 H 0.177 0.823 36 H 0.240 0.760 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.688 22.640 1.206 23.638 hybrid contribution -0.741 -1.975 -0.532 2.175 sum 5.946 20.666 0.674 21.515 Atomic orbital electron populations 1.22271 0.74225 1.04130 1.05275 1.45199 1.08294 1.04903 1.58134 1.25698 0.84227 0.93909 0.96074 1.70388 1.18233 1.08893 1.23098 1.18904 0.85210 0.90595 1.02517 1.65859 1.35123 1.03066 1.13320 1.18515 0.85812 0.84988 0.96772 1.84862 1.45823 1.63028 1.34231 1.22181 0.90718 1.01578 1.01694 1.19137 0.94437 0.89770 1.03271 1.18022 0.86780 0.80612 0.80430 1.90794 1.48713 1.59917 1.41462 1.46073 1.14013 1.30957 1.44890 1.21582 0.81343 0.95306 1.00938 1.22467 0.99315 0.93745 0.97995 0.90492 1.23009 0.93409 0.99929 1.01028 1.21932 0.92211 0.89300 0.93865 1.44564 1.21366 1.01225 1.65875 1.19073 1.04431 0.81691 1.30068 0.90486 1.24792 0.97168 0.98141 1.00527 1.69782 1.13233 1.29496 1.44590 0.86070 0.77721 0.83985 0.77704 1.21534 1.21619 1.20698 1.21394 0.93718 0.86500 0.96987 1.19421 0.93376 0.88793 1.07281 0.89297 0.89354 0.89418 0.75693 0.73795 0.82260 0.75997 0.90688 0.91317 0.91782 0.92083 0.87466 0.96986 0.93670 0.96301 0.95693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 9.41 59.85 0.56 1.14 16 2 N -0.48 -4.42 3.19 -122.88 -0.39 -4.81 16 3 C 0.29 2.32 12.49 -89.77 -1.12 1.19 16 4 N -0.49 -5.96 11.27 -13.60 -0.15 -6.12 16 5 C 0.27 3.66 8.37 -156.97 -1.31 2.35 16 6 N -0.45 -6.27 10.41 -12.77 -0.13 -6.40 16 7 C 0.33 3.74 7.71 -17.22 -0.13 3.61 16 8 O -0.47 -4.43 13.55 -18.89 -0.26 -4.68 16 9 C -0.14 -1.40 9.41 -38.76 -0.36 -1.76 16 10 C -0.05 -0.59 5.77 -104.71 -0.60 -1.20 16 11 C 0.56 6.63 6.67 -12.30 -0.08 6.55 16 12 O -0.53 -7.43 13.57 5.33 0.07 -7.36 16 13 N -0.71 -7.70 5.38 -61.23 -0.33 -8.03 16 14 C 0.13 1.64 5.00 -4.04 -0.02 1.61 16 15 C -0.12 -1.71 2.98 -88.78 -0.26 -1.98 16 16 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.13 -2.28 6.54 -24.58 -0.16 -2.44 16 18 C 0.15 3.48 5.89 -2.53 -0.01 3.46 16 19 N -0.60 -14.71 3.40 -169.83 -0.58 -15.28 16 20 C -0.22 -6.06 10.28 -15.06 -0.15 -6.21 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -26.21 10.09 55.49 0.56 -25.65 16 24 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.14 2.62 6.66 -2.90 -0.02 2.60 16 29 C 0.03 0.32 6.77 -83.67 -0.57 -0.25 16 30 H 0.09 0.70 7.75 -51.93 -0.40 0.30 16 31 H 0.09 0.76 6.21 -51.93 -0.32 0.44 16 32 H 0.09 0.28 8.13 -51.93 -0.42 -0.14 16 33 H 0.23 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.40 1.64 9.06 45.56 0.41 2.05 16 35 H 0.16 1.27 7.99 -52.49 -0.42 0.85 16 36 H 0.41 3.71 8.00 -40.82 -0.33 3.39 16 37 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.11 2.81 5.87 -51.93 -0.30 2.50 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.03 0.48 7.73 -51.93 -0.40 0.08 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -36.36 372.86 -10.07 -46.43 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.10 Total: 1.42 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -4.35 Total: 8.29 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -1.03 Total: -66.29 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.18 Total: -12.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.36 -10.07 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028590003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.397 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds